[INFO] cloning repository https://github.com/lucaskbobadilla/ampliclust [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lucaskbobadilla/ampliclust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flucaskbobadilla%2Fampliclust", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flucaskbobadilla%2Fampliclust'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1fd0686da6ba55d31a14663a3657bbcdadcbd9ff [INFO] checking lucaskbobadilla/ampliclust against try#24e1a22664233bce1f9b5dc6eee7c1f74327e28c for pr-159343 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flucaskbobadilla%2Fampliclust" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] Updating files: 39% (4957/12497) Updating files: 40% (4999/12497) Updating files: 41% (5124/12497) Updating files: 42% (5249/12497) Updating files: 43% (5374/12497) Updating files: 44% (5499/12497) Updating files: 45% (5624/12497) Updating files: 46% (5749/12497) Updating files: 47% (5874/12497) Updating files: 48% (5999/12497) Updating files: 49% (6124/12497) Updating files: 50% (6249/12497) Updating files: 51% (6374/12497) Updating files: 52% (6499/12497) Updating files: 53% (6624/12497) Updating files: 54% (6749/12497) Updating files: 55% (6874/12497) Updating files: 55% (6953/12497) Updating files: 56% (6999/12497) Updating files: 57% (7124/12497) Updating files: 58% (7249/12497) Updating files: 58% (7251/12497) Updating files: 59% (7374/12497) Updating files: 60% (7499/12497) Updating files: 60% (7605/12497) Updating files: 61% (7624/12497) Updating files: 62% (7749/12497) Updating files: 63% (7874/12497) Updating files: 64% (7999/12497) Updating files: 65% (8124/12497) Updating files: 66% (8249/12497) Updating files: 67% (8373/12497) Updating files: 68% (8498/12497) Updating files: 69% (8623/12497) Updating files: 70% (8748/12497) Updating files: 71% (8873/12497) Updating files: 72% (8998/12497) Updating files: 73% (9123/12497) Updating files: 74% (9248/12497) Updating files: 75% (9373/12497) Updating files: 76% (9498/12497) Updating files: 77% (9623/12497) Updating files: 78% (9748/12497) Updating files: 79% (9873/12497) Updating files: 80% (9998/12497) Updating files: 81% (10123/12497) Updating files: 82% (10248/12497) Updating files: 83% (10373/12497) Updating files: 84% (10498/12497) Updating files: 85% (10623/12497) Updating files: 86% (10748/12497) Updating files: 87% (10873/12497) Updating files: 88% (10998/12497) Updating files: 89% (11123/12497) Updating files: 90% (11248/12497) Updating files: 91% (11373/12497) Updating files: 92% (11498/12497) Updating files: 93% (11623/12497) Updating files: 94% (11748/12497) Updating files: 94% (11805/12497) Updating files: 95% (11873/12497) Updating files: 96% (11998/12497) Updating files: 97% (12123/12497) Updating files: 97% (12206/12497) Updating files: 98% (12248/12497) Updating files: 99% (12373/12497) Updating files: 100% (12497/12497) Updating files: 100% (12497/12497), done. [INFO] started tweaking git repo https://github.com/lucaskbobadilla/ampliclust [INFO] finished tweaking git repo https://github.com/lucaskbobadilla/ampliclust [INFO] tweaked toml for git repo https://github.com/lucaskbobadilla/ampliclust written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/lucaskbobadilla/ampliclust on toolchain 24e1a22664233bce1f9b5dc6eee7c1f74327e28c [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+24e1a22664233bce1f9b5dc6eee7c1f74327e28c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/lucaskbobadilla/ampliclust already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+24e1a22664233bce1f9b5dc6eee7c1f74327e28c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40 [INFO] running `Command { std: "docker" "start" "a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40" "/opt/rustwide/cargo-home/bin/cargo" "+24e1a22664233bce1f9b5dc6eee7c1f74327e28c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40" "/opt/rustwide/cargo-home/bin/cargo" "+24e1a22664233bce1f9b5dc6eee7c1f74327e28c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Compiling libc v0.2.178 [INFO] [stderr] Compiling find-msvc-tools v0.1.5 [INFO] [stderr] Compiling zerocopy v0.8.31 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking hashbrown v0.16.1 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking lexical-util v0.8.5 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Checking simd-adler32 v0.3.7 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking writeable v0.6.2 [INFO] [stderr] Checking litemap v0.8.1 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking crc32fast v1.5.0 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling icu_properties_data v2.1.1 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Checking bytes v1.11.0 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking lexical-parse-integer v0.8.6 [INFO] [stderr] Checking lexical-write-integer v0.8.5 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking flate2 v1.1.7 [INFO] [stderr] Checking indexmap v2.12.1 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling syn v2.0.111 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking noodles-bgzf v0.28.0 [INFO] [stderr] Checking noodles-core v0.14.0 [INFO] [stderr] Checking anstream v0.6.21 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking lexical-parse-float v0.8.5 [INFO] [stderr] Checking lexical-write-float v0.8.5 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Compiling linfa v0.7.1 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking noisy_float v0.2.0 [INFO] [stderr] Checking lexical-core v0.8.5 [INFO] [stderr] Checking noodles-csi v0.32.0 [INFO] [stderr] Checking clap_lex v0.7.6 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking percent-encoding v2.3.2 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Compiling cc v1.2.48 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking noodles-sam v0.57.0 [INFO] [stderr] Checking clap_builder v4.5.53 [INFO] [stderr] Checking form_urlencoded v1.2.2 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking order-stat v0.1.3 [INFO] [stderr] Checking winnow v0.7.14 [INFO] [stderr] Checking toml_write v0.1.2 [INFO] [stderr] Checking rustix v1.1.2 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.4+3.5.4 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking noodles-bam v0.60.0 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling libz-sys v1.1.23 [INFO] [stderr] Compiling openssl-sys v0.9.111 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.84+curl-8.17.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking env_filter v0.1.4 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking rand_xoshiro v0.6.0 [INFO] [stderr] Checking parking_lot_core v0.9.12 [INFO] [stderr] Checking noodles-fasta v0.35.0 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking crossbeam-queue v0.3.12 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking noodles-fastq v0.10.0 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking space v0.12.1 [INFO] [stderr] Checking jiff v0.2.16 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking iana-time-zone v0.1.64 [INFO] [stderr] Checking noodles v0.70.0 [INFO] [stderr] Checking tempfile v3.23.0 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking parking_lot v0.12.5 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking wait-timeout v0.2.1 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking criterion-plot v0.5.0 [INFO] [stderr] Checking rusty-fork v0.3.1 [INFO] [stderr] Checking plotters v0.3.7 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Checking rand_xorshift v0.4.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking is-terminal v0.4.17 [INFO] [stderr] Checking oorandom v11.1.5 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking sprs v0.11.1 [INFO] [stderr] Compiling zerocopy-derive v0.8.31 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling yoke-derive v0.8.1 [INFO] [stderr] Compiling zerovec-derive v0.11.2 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking kdtree v0.7.0 [INFO] [stderr] Checking linfa-linalg v0.1.0 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking yoke v0.8.1 [INFO] [stderr] Checking env_logger v0.11.8 [INFO] [stderr] Checking zerovec v0.11.5 [INFO] [stderr] Checking zerotrie v0.2.3 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking tinystr v0.8.2 [INFO] [stderr] Checking potential_utf v0.1.4 [INFO] [stderr] Checking icu_collections v2.1.1 [INFO] [stderr] Checking icu_locale_core v2.1.1 [INFO] [stderr] Checking clap v4.5.53 [INFO] [stderr] Checking icu_provider v2.1.1 [INFO] [stderr] Checking icu_normalizer v2.1.1 [INFO] [stderr] Checking icu_properties v2.1.1 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking half v2.7.1 [INFO] [stderr] Checking ciborium-ll v0.2.2 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking toml_datetime v0.6.11 [INFO] [stderr] Checking serde_spanned v0.6.9 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking seq_io v0.3.4 [INFO] [stderr] Checking ciborium v0.2.2 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking toml_edit v0.22.27 [INFO] [stderr] Checking proptest v1.9.0 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking url v2.5.7 [INFO] [stderr] Checking criterion v0.5.1 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking ndarray-stats v0.5.1 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking ndarray-rand v0.14.0 [INFO] [stderr] Checking linfa-nn v0.7.2 [INFO] [stderr] Checking toml v0.8.23 [INFO] [stderr] Checking linfa-clustering v0.7.1 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking rust-htslib v0.47.1 [INFO] [stderr] Checking ampliclust v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 58s [INFO] running `Command { std: "docker" "inspect" "a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40", kill_on_drop: false }` [INFO] [stdout] a5532eabaa01e7f1960cf2825cd691122bf21a2d3c0465347f6521a2d059ce40