[INFO] fetching crate rvdna 0.3.0...
[INFO] checking rvdna-0.3.0 against df1ae0f7dd168513de2d89beb2cb7a95d4fdc118 for pr-159343-retry
[INFO] extracting crate rvdna 0.3.0 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate rvdna 0.3.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate rvdna 0.3.0
[INFO] tweaked toml for crates.io crate rvdna 0.3.0 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rvdna 0.3.0 on toolchain df1ae0f7dd168513de2d89beb2cb7a95d4fdc118
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+df1ae0f7dd168513de2d89beb2cb7a95d4fdc118" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rvdna 0.3.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+df1ae0f7dd168513de2d89beb2cb7a95d4fdc118" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96
[INFO] running `Command { std: "docker" "start" "62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96" "/opt/rustwide/cargo-home/bin/cargo" "+df1ae0f7dd168513de2d89beb2cb7a95d4fdc118" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96" "/opt/rustwide/cargo-home/bin/cargo" "+df1ae0f7dd168513de2d89beb2cb7a95d4fdc118" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]     Checking criterion v0.5.1
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking ruvector-math v2.0.4
[INFO] [stderr]     Checking lz4 v1.28.1
[INFO] [stderr]     Checking ruvector-graph v2.0.4
[INFO] [stderr]     Checking rvdna v0.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `QualityScore`
[INFO] [stdout]   --> src/rvdna.rs:40:45
[INFO] [stdout]    |
[INFO] [stdout] 40 | use crate::types::{DnaSequence, Nucleotide, QualityScore};
[INFO] [stdout]    |                                             ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: ambiguous glob re-exports
[INFO] [stdout]   --> src/lib.rs:79:13
[INFO] [stdout]    |
[INFO] [stdout] 79 |     pub use crate::kmer::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^ the name `KmerIndex` in the type namespace is first re-exported here
[INFO] [stdout] ...
[INFO] [stdout] 82 |     pub use crate::types::*;
[INFO] [stdout]    |             --------------- but the name `KmerIndex` in the type namespace is also re-exported here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(ambiguous_glob_reexports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `QualityScore`
[INFO] [stdout]   --> src/rvdna.rs:40:45
[INFO] [stdout]    |
[INFO] [stdout] 40 | use crate::types::{DnaSequence, Nucleotide, QualityScore};
[INFO] [stdout]    |                                             ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: ambiguous glob re-exports
[INFO] [stdout]   --> src/lib.rs:79:13
[INFO] [stdout]    |
[INFO] [stdout] 79 |     pub use crate::kmer::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^ the name `KmerIndex` in the type namespace is first re-exported here
[INFO] [stdout] ...
[INFO] [stdout] 82 |     pub use crate::types::*;
[INFO] [stdout]    |             --------------- but the name `KmerIndex` in the type namespace is also re-exported here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(ambiguous_glob_reexports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `next_ref_bases`
[INFO] [stdout]    --> src/variant.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         next_ref_bases: &[u8],
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_next_ref_bases`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `nucleotide_to_bits` is never used
[INFO] [stdout]   --> src/kmer.rs:30:4
[INFO] [stdout]    |
[INFO] [stdout] 30 | fn nucleotide_to_bits(nuc: u8) -> Option<u8> {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `hash_kmer` is never used
[INFO] [stdout]    --> src/kmer.rs:169:8
[INFO] [stdout]     |
[INFO] [stdout]  70 | impl KmerEncoder {
[INFO] [stdout]     | ---------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 |     pub name: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: the lint level is defined here
[INFO] [stdout]   --> src/lib.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | #![warn(missing_docs)]
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub unit: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub normal_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub normal_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub critical_low: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub critical_high: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub category: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 |     CriticalLow,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:28:5
[INFO] [stdout]    |
[INFO] [stdout] 28 |     Low,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:29:5
[INFO] [stdout]    |
[INFO] [stdout] 29 |     Normal,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:30:5
[INFO] [stdout]    |
[INFO] [stdout] 30 |     High,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 31 |     CriticalHigh,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:87:5
[INFO] [stdout]    |
[INFO] [stdout] 87 |     pub category: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:88:5
[INFO] [stdout]    |
[INFO] [stdout] 88 |     pub score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:89:5
[INFO] [stdout]    |
[INFO] [stdout] 89 |     pub confidence: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:90:5
[INFO] [stdout]    |
[INFO] [stdout] 90 |     pub contributing_variants: Vec<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:96:5
[INFO] [stdout]    |
[INFO] [stdout] 96 |     pub subject_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:97:5
[INFO] [stdout]    |
[INFO] [stdout] 97 |     pub timestamp: i64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:98:5
[INFO] [stdout]    |
[INFO] [stdout] 98 |     pub category_scores: HashMap<String, CategoryScore>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:99:5
[INFO] [stdout]    |
[INFO] [stdout] 99 |     pub global_risk_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:100:5
[INFO] [stdout]     |
[INFO] [stdout] 100 |     pub profile_vector: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:101:5
[INFO] [stdout]     |
[INFO] [stdout] 101 |     pub biomarker_values: HashMap<String, f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub base_interval_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub noise_amplitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub drift_rate: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub anomaly_probability: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub anomaly_magnitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub num_biomarkers: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub window_size: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:43:5
[INFO] [stdout]    |
[INFO] [stdout] 43 |     pub timestamp_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:44:5
[INFO] [stdout]    |
[INFO] [stdout] 44 |     pub biomarker_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:45:5
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub value: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:46:5
[INFO] [stdout]    |
[INFO] [stdout] 46 |     pub reference_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:47:5
[INFO] [stdout]    |
[INFO] [stdout] 47 |     pub reference_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 |     pub is_anomaly: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:49:5
[INFO] [stdout]    |
[INFO] [stdout] 49 |     pub z_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]   --> src/biomarker_stream.rs:64:5
[INFO] [stdout]    |
[INFO] [stdout] 64 |     pub fn new(capacity: usize) -> Self {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:69:5
[INFO] [stdout]    |
[INFO] [stdout] 69 |     pub fn push(&mut self, item: T) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 |     pub fn iter(&self) -> impl Iterator<Item = &T> {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 |     pub fn len(&self) -> usize { self.len }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:84:5
[INFO] [stdout]    |
[INFO] [stdout] 84 |     pub fn is_full(&self) -> bool { self.len == self.capacity }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:86:5
[INFO] [stdout]    |
[INFO] [stdout] 86 |     pub fn clear(&mut self) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:152:5
[INFO] [stdout]     |
[INFO] [stdout] 152 |     pub mean: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:153:5
[INFO] [stdout]     |
[INFO] [stdout] 153 |     pub variance: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:154:5
[INFO] [stdout]     |
[INFO] [stdout] 154 |     pub min: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:155:5
[INFO] [stdout]     |
[INFO] [stdout] 155 |     pub max: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:156:5
[INFO] [stdout]     |
[INFO] [stdout] 156 |     pub count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:157:5
[INFO] [stdout]     |
[INFO] [stdout] 157 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:158:5
[INFO] [stdout]     |
[INFO] [stdout] 158 |     pub trend_slope: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:159:5
[INFO] [stdout]     |
[INFO] [stdout] 159 |     pub ema: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:160:5
[INFO] [stdout]     |
[INFO] [stdout] 160 |     pub cusum_pos: f64,          // CUSUM positive direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:161:5
[INFO] [stdout]     |
[INFO] [stdout] 161 |     pub cusum_neg: f64,          // CUSUM negative direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:162:5
[INFO] [stdout]     |
[INFO] [stdout] 162 |     pub changepoint_detected: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:177:5
[INFO] [stdout]     |
[INFO] [stdout] 177 |     pub accepted: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:178:5
[INFO] [stdout]     |
[INFO] [stdout] 178 |     pub z_score: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:179:5
[INFO] [stdout]     |
[INFO] [stdout] 179 |     pub is_anomaly: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:180:5
[INFO] [stdout]     |
[INFO] [stdout] 180 |     pub current_trend: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:185:5
[INFO] [stdout]     |
[INFO] [stdout] 185 |     pub total_readings: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:186:5
[INFO] [stdout]     |
[INFO] [stdout] 186 |     pub anomaly_count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:187:5
[INFO] [stdout]     |
[INFO] [stdout] 187 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:188:5
[INFO] [stdout]     |
[INFO] [stdout] 188 |     pub biomarker_stats: HashMap<String, StreamStats>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:189:5
[INFO] [stdout]     |
[INFO] [stdout] 189 |     pub throughput_readings_per_sec: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]    --> src/biomarker_stream.rs:214:5
[INFO] [stdout]     |
[INFO] [stdout] 214 |     pub fn new(config: StreamConfig) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:223:5
[INFO] [stdout]     |
[INFO] [stdout] 223 |     pub fn process_reading(&mut self, reading: &BiomarkerReading) -> ProcessingResult {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:275:5
[INFO] [stdout]     |
[INFO] [stdout] 275 |     pub fn get_stats(&self, biomarker_id: &str) -> Option<&StreamStats> {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:279:5
[INFO] [stdout]     |
[INFO] [stdout] 279 |     pub fn summary(&self) -> StreamSummary {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:25
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:42
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:196:5
[INFO] [stdout]     |
[INFO] [stdout] 196 |     pub name: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:197:5
[INFO] [stdout]     |
[INFO] [stdout] 197 |     pub snp_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:198:5
[INFO] [stdout]     |
[INFO] [stdout] 198 |     pub het_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:199:5
[INFO] [stdout]     |
[INFO] [stdout] 199 |     pub het_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:200:5
[INFO] [stdout]     |
[INFO] [stdout] 200 |     pub signature: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:378:5
[INFO] [stdout]     |
[INFO] [stdout] 378 |     pub gene: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:379:5
[INFO] [stdout]     |
[INFO] [stdout] 379 |     pub allele1: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:380:5
[INFO] [stdout]     |
[INFO] [stdout] 380 |     pub allele2: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:381:5
[INFO] [stdout]     |
[INFO] [stdout] 381 |     pub activity: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:382:5
[INFO] [stdout]     |
[INFO] [stdout] 382 |     pub phenotype: MetabolizerPhenotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:539:5
[INFO] [stdout]     |
[INFO] [stdout] 539 |     pub data: GenotypeData,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:540:5
[INFO] [stdout]     |
[INFO] [stdout] 540 |     pub cyp2d6: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:541:5
[INFO] [stdout]     |
[INFO] [stdout] 541 |     pub cyp2c19: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:542:5
[INFO] [stdout]     |
[INFO] [stdout] 542 |     pub cyp2d6_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:543:5
[INFO] [stdout]     |
[INFO] [stdout] 543 |     pub cyp2c19_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:544:5
[INFO] [stdout]     |
[INFO] [stdout] 544 |     pub health_variants: Vec<HealthVariantResult>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:545:5
[INFO] [stdout]     |
[INFO] [stdout] 545 |     pub apoe: ApoeResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:546:5
[INFO] [stdout]     |
[INFO] [stdout] 546 |     pub mthfr: MthfrResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:547:5
[INFO] [stdout]     |
[INFO] [stdout] 547 |     pub pain: Option<PainProfile>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:548:5
[INFO] [stdout]     |
[INFO] [stdout] 548 |     pub region_qc: Vec<RegionQc>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:549:5
[INFO] [stdout]     |
[INFO] [stdout] 549 |     pub similarities: Vec<(String, String, f32)>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:550:5
[INFO] [stdout]     |
[INFO] [stdout] 550 |     pub homozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:551:5
[INFO] [stdout]     |
[INFO] [stdout] 551 |     pub heterozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:552:5
[INFO] [stdout]     |
[INFO] [stdout] 552 |     pub indels: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:553:5
[INFO] [stdout]     |
[INFO] [stdout] 553 |     pub het_ratio: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:554:5
[INFO] [stdout]     |
[INFO] [stdout] 554 |     pub elapsed_ms: u128,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an enum
[INFO] [stdout]   --> src/kmer.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub enum KmerError {
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     InvalidKmerLength(usize),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     InvalidSequence(String),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     DatabaseError(#[from] ruvector_core::RuvectorError),
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     EmptySequence,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:299:5
[INFO] [stdout]     |
[INFO] [stdout] 299 |     pub id: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:300:5
[INFO] [stdout]     |
[INFO] [stdout] 300 |     pub score: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:301:5
[INFO] [stdout]     |
[INFO] [stdout] 301 |     pub distance: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `next_ref_bases`
[INFO] [stdout]    --> src/variant.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         next_ref_bases: &[u8],
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_next_ref_bases`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:408:9
[INFO] [stdout]     |
[INFO] [stdout] 408 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:409:9
[INFO] [stdout]     |
[INFO] [stdout] 409 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:413:9
[INFO] [stdout]     |
[INFO] [stdout] 413 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:414:9
[INFO] [stdout]     |
[INFO] [stdout] 414 |         inserted_bases: DnaSequence,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:415:9
[INFO] [stdout]     |
[INFO] [stdout] 415 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:419:9
[INFO] [stdout]     |
[INFO] [stdout] 419 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:420:9
[INFO] [stdout]     |
[INFO] [stdout] 420 |         deleted_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:421:9
[INFO] [stdout]     |
[INFO] [stdout] 421 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:425:9
[INFO] [stdout]     |
[INFO] [stdout] 425 |         chromosome: u8,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:426:9
[INFO] [stdout]     |
[INFO] [stdout] 426 |         start: u64,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:427:9
[INFO] [stdout]     |
[INFO] [stdout] 427 |         end: u64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:428:9
[INFO] [stdout]     |
[INFO] [stdout] 428 |         variant_type: String,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:429:9
[INFO] [stdout]     |
[INFO] [stdout] 429 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:464:5
[INFO] [stdout]     |
[INFO] [stdout] 464 |     A,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:465:5
[INFO] [stdout]     |
[INFO] [stdout] 465 |     C,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:466:5
[INFO] [stdout]     |
[INFO] [stdout] 466 |     D,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:467:5
[INFO] [stdout]     |
[INFO] [stdout] 467 |     E,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:468:5
[INFO] [stdout]     |
[INFO] [stdout] 468 |     F,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:469:5
[INFO] [stdout]     |
[INFO] [stdout] 469 |     G,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:470:5
[INFO] [stdout]     |
[INFO] [stdout] 470 |     H,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:471:5
[INFO] [stdout]     |
[INFO] [stdout] 471 |     I,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:472:5
[INFO] [stdout]     |
[INFO] [stdout] 472 |     K,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:473:5
[INFO] [stdout]     |
[INFO] [stdout] 473 |     L,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:474:5
[INFO] [stdout]     |
[INFO] [stdout] 474 |     M,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:475:5
[INFO] [stdout]     |
[INFO] [stdout] 475 |     N,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:476:5
[INFO] [stdout]     |
[INFO] [stdout] 476 |     P,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:477:5
[INFO] [stdout]     |
[INFO] [stdout] 477 |     Q,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:478:5
[INFO] [stdout]     |
[INFO] [stdout] 478 |     R,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:479:5
[INFO] [stdout]     |
[INFO] [stdout] 479 |     S,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:480:5
[INFO] [stdout]     |
[INFO] [stdout] 480 |     T,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:481:5
[INFO] [stdout]     |
[INFO] [stdout] 481 |     V,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:482:5
[INFO] [stdout]     |
[INFO] [stdout] 482 |     W,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:483:5
[INFO] [stdout]     |
[INFO] [stdout] 483 |     Y,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `hash_kmer` is never used
[INFO] [stdout]    --> src/kmer.rs:169:8
[INFO] [stdout]     |
[INFO] [stdout]  70 | impl KmerEncoder {
[INFO] [stdout]     | ---------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 |     pub name: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: the lint level is defined here
[INFO] [stdout]   --> src/lib.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | #![warn(missing_docs)]
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub unit: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub normal_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub normal_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub critical_low: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub critical_high: Option<f64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub category: &'static str,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 |     CriticalLow,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:28:5
[INFO] [stdout]    |
[INFO] [stdout] 28 |     Low,
[INFO] [stdout]    |     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:29:5
[INFO] [stdout]    |
[INFO] [stdout] 29 |     Normal,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:30:5
[INFO] [stdout]    |
[INFO] [stdout] 30 |     High,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/biomarker.rs:31:5
[INFO] [stdout]    |
[INFO] [stdout] 31 |     CriticalHigh,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:87:5
[INFO] [stdout]    |
[INFO] [stdout] 87 |     pub category: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:88:5
[INFO] [stdout]    |
[INFO] [stdout] 88 |     pub score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:89:5
[INFO] [stdout]    |
[INFO] [stdout] 89 |     pub confidence: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:90:5
[INFO] [stdout]    |
[INFO] [stdout] 90 |     pub contributing_variants: Vec<String>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:96:5
[INFO] [stdout]    |
[INFO] [stdout] 96 |     pub subject_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:97:5
[INFO] [stdout]    |
[INFO] [stdout] 97 |     pub timestamp: i64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:98:5
[INFO] [stdout]    |
[INFO] [stdout] 98 |     pub category_scores: HashMap<String, CategoryScore>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker.rs:99:5
[INFO] [stdout]    |
[INFO] [stdout] 99 |     pub global_risk_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:100:5
[INFO] [stdout]     |
[INFO] [stdout] 100 |     pub profile_vector: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker.rs:101:5
[INFO] [stdout]     |
[INFO] [stdout] 101 |     pub biomarker_values: HashMap<String, f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub base_interval_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 |     pub noise_amplitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     pub drift_rate: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub anomaly_probability: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub anomaly_magnitude: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub num_biomarkers: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub window_size: usize,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:43:5
[INFO] [stdout]    |
[INFO] [stdout] 43 |     pub timestamp_ms: u64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:44:5
[INFO] [stdout]    |
[INFO] [stdout] 44 |     pub biomarker_id: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:45:5
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub value: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:46:5
[INFO] [stdout]    |
[INFO] [stdout] 46 |     pub reference_low: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:47:5
[INFO] [stdout]    |
[INFO] [stdout] 47 |     pub reference_high: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 |     pub is_anomaly: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/biomarker_stream.rs:49:5
[INFO] [stdout]    |
[INFO] [stdout] 49 |     pub z_score: f64,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]   --> src/biomarker_stream.rs:64:5
[INFO] [stdout]    |
[INFO] [stdout] 64 |     pub fn new(capacity: usize) -> Self {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:69:5
[INFO] [stdout]    |
[INFO] [stdout] 69 |     pub fn push(&mut self, item: T) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 |     pub fn iter(&self) -> impl Iterator<Item = &T> {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 |     pub fn len(&self) -> usize { self.len }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:84:5
[INFO] [stdout]    |
[INFO] [stdout] 84 |     pub fn is_full(&self) -> bool { self.len == self.capacity }
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]   --> src/biomarker_stream.rs:86:5
[INFO] [stdout]    |
[INFO] [stdout] 86 |     pub fn clear(&mut self) {
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:152:5
[INFO] [stdout]     |
[INFO] [stdout] 152 |     pub mean: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:153:5
[INFO] [stdout]     |
[INFO] [stdout] 153 |     pub variance: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:154:5
[INFO] [stdout]     |
[INFO] [stdout] 154 |     pub min: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:155:5
[INFO] [stdout]     |
[INFO] [stdout] 155 |     pub max: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:156:5
[INFO] [stdout]     |
[INFO] [stdout] 156 |     pub count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:157:5
[INFO] [stdout]     |
[INFO] [stdout] 157 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:158:5
[INFO] [stdout]     |
[INFO] [stdout] 158 |     pub trend_slope: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:159:5
[INFO] [stdout]     |
[INFO] [stdout] 159 |     pub ema: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:160:5
[INFO] [stdout]     |
[INFO] [stdout] 160 |     pub cusum_pos: f64,          // CUSUM positive direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:161:5
[INFO] [stdout]     |
[INFO] [stdout] 161 |     pub cusum_neg: f64,          // CUSUM negative direction
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:162:5
[INFO] [stdout]     |
[INFO] [stdout] 162 |     pub changepoint_detected: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:177:5
[INFO] [stdout]     |
[INFO] [stdout] 177 |     pub accepted: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:178:5
[INFO] [stdout]     |
[INFO] [stdout] 178 |     pub z_score: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:179:5
[INFO] [stdout]     |
[INFO] [stdout] 179 |     pub is_anomaly: bool,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:180:5
[INFO] [stdout]     |
[INFO] [stdout] 180 |     pub current_trend: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:185:5
[INFO] [stdout]     |
[INFO] [stdout] 185 |     pub total_readings: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:186:5
[INFO] [stdout]     |
[INFO] [stdout] 186 |     pub anomaly_count: u64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:187:5
[INFO] [stdout]     |
[INFO] [stdout] 187 |     pub anomaly_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:188:5
[INFO] [stdout]     |
[INFO] [stdout] 188 |     pub biomarker_stats: HashMap<String, StreamStats>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/biomarker_stream.rs:189:5
[INFO] [stdout]     |
[INFO] [stdout] 189 |     pub throughput_readings_per_sec: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an associated function
[INFO] [stdout]    --> src/biomarker_stream.rs:214:5
[INFO] [stdout]     |
[INFO] [stdout] 214 |     pub fn new(config: StreamConfig) -> Self {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:223:5
[INFO] [stdout]     |
[INFO] [stdout] 223 |     pub fn process_reading(&mut self, reading: &BiomarkerReading) -> ProcessingResult {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:275:5
[INFO] [stdout]     |
[INFO] [stdout] 275 |     pub fn get_stats(&self, biomarker_id: &str) -> Option<&StreamStats> {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a method
[INFO] [stdout]    --> src/biomarker_stream.rs:279:5
[INFO] [stdout]     |
[INFO] [stdout] 279 |     pub fn summary(&self) -> StreamSummary {
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:25
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:42
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:196:5
[INFO] [stdout]     |
[INFO] [stdout] 196 |     pub name: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:197:5
[INFO] [stdout]     |
[INFO] [stdout] 197 |     pub snp_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:198:5
[INFO] [stdout]     |
[INFO] [stdout] 198 |     pub het_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:199:5
[INFO] [stdout]     |
[INFO] [stdout] 199 |     pub het_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:200:5
[INFO] [stdout]     |
[INFO] [stdout] 200 |     pub signature: Vec<f32>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:378:5
[INFO] [stdout]     |
[INFO] [stdout] 378 |     pub gene: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:379:5
[INFO] [stdout]     |
[INFO] [stdout] 379 |     pub allele1: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:380:5
[INFO] [stdout]     |
[INFO] [stdout] 380 |     pub allele2: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:381:5
[INFO] [stdout]     |
[INFO] [stdout] 381 |     pub activity: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:382:5
[INFO] [stdout]     |
[INFO] [stdout] 382 |     pub phenotype: MetabolizerPhenotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:539:5
[INFO] [stdout]     |
[INFO] [stdout] 539 |     pub data: GenotypeData,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:540:5
[INFO] [stdout]     |
[INFO] [stdout] 540 |     pub cyp2d6: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:541:5
[INFO] [stdout]     |
[INFO] [stdout] 541 |     pub cyp2c19: CypDiplotype,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:542:5
[INFO] [stdout]     |
[INFO] [stdout] 542 |     pub cyp2d6_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:543:5
[INFO] [stdout]     |
[INFO] [stdout] 543 |     pub cyp2c19_recs: Vec<DrugRecommendation>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:544:5
[INFO] [stdout]     |
[INFO] [stdout] 544 |     pub health_variants: Vec<HealthVariantResult>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:545:5
[INFO] [stdout]     |
[INFO] [stdout] 545 |     pub apoe: ApoeResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:546:5
[INFO] [stdout]     |
[INFO] [stdout] 546 |     pub mthfr: MthfrResult,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:547:5
[INFO] [stdout]     |
[INFO] [stdout] 547 |     pub pain: Option<PainProfile>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:548:5
[INFO] [stdout]     |
[INFO] [stdout] 548 |     pub region_qc: Vec<RegionQc>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:549:5
[INFO] [stdout]     |
[INFO] [stdout] 549 |     pub similarities: Vec<(String, String, f32)>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:550:5
[INFO] [stdout]     |
[INFO] [stdout] 550 |     pub homozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:551:5
[INFO] [stdout]     |
[INFO] [stdout] 551 |     pub heterozygous: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:552:5
[INFO] [stdout]     |
[INFO] [stdout] 552 |     pub indels: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:553:5
[INFO] [stdout]     |
[INFO] [stdout] 553 |     pub het_ratio: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/genotyping.rs:554:5
[INFO] [stdout]     |
[INFO] [stdout] 554 |     pub elapsed_ms: u128,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an enum
[INFO] [stdout]   --> src/kmer.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub enum KmerError {
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     InvalidKmerLength(usize),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     InvalidSequence(String),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     DatabaseError(#[from] ruvector_core::RuvectorError),
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     EmptySequence,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:299:5
[INFO] [stdout]     |
[INFO] [stdout] 299 |     pub id: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:300:5
[INFO] [stdout]     |
[INFO] [stdout] 300 |     pub score: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:301:5
[INFO] [stdout]     |
[INFO] [stdout] 301 |     pub distance: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:408:9
[INFO] [stdout]     |
[INFO] [stdout] 408 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:409:9
[INFO] [stdout]     |
[INFO] [stdout] 409 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:413:9
[INFO] [stdout]     |
[INFO] [stdout] 413 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:414:9
[INFO] [stdout]     |
[INFO] [stdout] 414 |         inserted_bases: DnaSequence,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:415:9
[INFO] [stdout]     |
[INFO] [stdout] 415 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:419:9
[INFO] [stdout]     |
[INFO] [stdout] 419 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:420:9
[INFO] [stdout]     |
[INFO] [stdout] 420 |         deleted_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:421:9
[INFO] [stdout]     |
[INFO] [stdout] 421 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:425:9
[INFO] [stdout]     |
[INFO] [stdout] 425 |         chromosome: u8,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:426:9
[INFO] [stdout]     |
[INFO] [stdout] 426 |         start: u64,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:427:9
[INFO] [stdout]     |
[INFO] [stdout] 427 |         end: u64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:428:9
[INFO] [stdout]     |
[INFO] [stdout] 428 |         variant_type: String,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:429:9
[INFO] [stdout]     |
[INFO] [stdout] 429 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:464:5
[INFO] [stdout]     |
[INFO] [stdout] 464 |     A,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:465:5
[INFO] [stdout]     |
[INFO] [stdout] 465 |     C,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:466:5
[INFO] [stdout]     |
[INFO] [stdout] 466 |     D,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:467:5
[INFO] [stdout]     |
[INFO] [stdout] 467 |     E,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:468:5
[INFO] [stdout]     |
[INFO] [stdout] 468 |     F,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:469:5
[INFO] [stdout]     |
[INFO] [stdout] 469 |     G,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:470:5
[INFO] [stdout]     |
[INFO] [stdout] 470 |     H,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:471:5
[INFO] [stdout]     |
[INFO] [stdout] 471 |     I,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:472:5
[INFO] [stdout]     |
[INFO] [stdout] 472 |     K,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:473:5
[INFO] [stdout]     |
[INFO] [stdout] 473 |     L,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:474:5
[INFO] [stdout]     |
[INFO] [stdout] 474 |     M,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:475:5
[INFO] [stdout]     |
[INFO] [stdout] 475 |     N,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:476:5
[INFO] [stdout]     |
[INFO] [stdout] 476 |     P,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:477:5
[INFO] [stdout]     |
[INFO] [stdout] 477 |     Q,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:478:5
[INFO] [stdout]     |
[INFO] [stdout] 478 |     R,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:479:5
[INFO] [stdout]     |
[INFO] [stdout] 479 |     S,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:480:5
[INFO] [stdout]     |
[INFO] [stdout] 480 |     T,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:481:5
[INFO] [stdout]     |
[INFO] [stdout] 481 |     V,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:482:5
[INFO] [stdout]     |
[INFO] [stdout] 482 |     W,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:483:5
[INFO] [stdout]     |
[INFO] [stdout] 483 |     Y,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> benches/dna_bench.rs:269:49
[INFO] [stdout]     |
[INFO] [stdout] 269 |         let betas: Vec<f32> = (0..1000).map(|i| (i as f32 / 1000.0)).collect();
[INFO] [stdout]     |                                                 ^                 ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 269 -         let betas: Vec<f32> = (0..1000).map(|i| (i as f32 / 1000.0)).collect();
[INFO] [stdout] 269 +         let betas: Vec<f32> = (0..1000).map(|i| i as f32 / 1000.0).collect();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> benches/dna_bench.rs:277:49
[INFO] [stdout]     |
[INFO] [stdout] 277 |         let betas: Vec<f32> = (0..1000).map(|i| (i as f32 / 2000.0 + 0.25)).collect();
[INFO] [stdout]     |                                                 ^                        ^
[INFO] [stdout]     |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 277 -         let betas: Vec<f32> = (0..1000).map(|i| (i as f32 / 2000.0 + 0.25)).collect();
[INFO] [stdout] 277 +         let betas: Vec<f32> = (0..1000).map(|i| i as f32 / 2000.0 + 0.25).collect();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Codec`, `KmerVectorBlock`, `RvdnaWriter`, `SparseAttention`, and `VariantTensor`
[INFO] [stdout]   --> src/main.rs:21:15
[INFO] [stdout]    |
[INFO] [stdout] 21 |         self, Codec, KmerVectorBlock, RvdnaReader, RvdnaWriter, SparseAttention, VariantTensor,
[INFO] [stdout]    |               ^^^^^  ^^^^^^^^^^^^^^^               ^^^^^^^^^^^  ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Codec`, `KmerVectorBlock`, `RvdnaWriter`, `SparseAttention`, and `VariantTensor`
[INFO] [stdout]   --> src/main.rs:21:15
[INFO] [stdout]    |
[INFO] [stdout] 21 |         self, Codec, KmerVectorBlock, RvdnaReader, RvdnaWriter, SparseAttention, VariantTensor,
[INFO] [stdout]    |               ^^^^^  ^^^^^^^^^^^^^^^               ^^^^^^^^^^^  ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ins_vec`
[INFO] [stdout]   --> src/main.rs:93:9
[INFO] [stdout]    |
[INFO] [stdout] 93 |     let ins_vec = insulin.to_kmer_vector(11, 512)?;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ins_vec`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ins_vec`
[INFO] [stdout]   --> src/main.rs:93:9
[INFO] [stdout]    |
[INFO] [stdout] 93 |     let ins_vec = insulin.to_kmer_vector(11, 512)?;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ins_vec`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 33s
[INFO] running `Command { std: "docker" "inspect" "62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96", kill_on_drop: false }`
[INFO] [stdout] 62c026dd97edc16d4586cec0573f02620bee4464df39a5c0f3407ec3c112ca96
