[INFO] fetching crate ferro-hgvs 0.9.1... [INFO] checking ferro-hgvs-0.9.1 against df1ae0f7dd168513de2d89beb2cb7a95d4fdc118 for pr-159343-retry [INFO] extracting crate ferro-hgvs 0.9.1 into /workspace/builds/worker-6-tc1/source [INFO] removed /workspace/builds/worker-6-tc1/source/rust-toolchain.toml [INFO] started tweaking crates.io crate ferro-hgvs 0.9.1 [INFO] removed 0 missing examples [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate ferro-hgvs 0.9.1 [INFO] tweaked toml for crates.io crate ferro-hgvs 0.9.1 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ferro-hgvs 0.9.1 on toolchain df1ae0f7dd168513de2d89beb2cb7a95d4fdc118 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+df1ae0f7dd168513de2d89beb2cb7a95d4fdc118" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ferro-hgvs 0.9.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+df1ae0f7dd168513de2d89beb2cb7a95d4fdc118" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded postgres-protocol v0.6.9 [INFO] [stderr] Downloaded http-range-header v0.3.1 [INFO] [stderr] Downloaded postgres-types v0.2.11 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded rkyv_derive v0.8.16 [INFO] [stderr] Downloaded superintervals v0.3.1 [INFO] [stderr] Downloaded rstest v0.23.0 [INFO] [stderr] Downloaded noodles v0.76.0 [INFO] [stderr] Downloaded smol_str v0.3.6 [INFO] [stderr] Downloaded noodles-fasta v0.39.0 [INFO] [stderr] Downloaded noodles-bgzf v0.30.0 [INFO] [stderr] Downloaded tokio-postgres v0.7.15 [INFO] [stderr] Downloaded pyo3-macros v0.28.3 [INFO] [stderr] Downloaded seqrepo v0.10.3 [INFO] [stderr] Downloaded rstest_macros v0.23.0 [INFO] [stderr] Downloaded noodles-core v0.20.0 [INFO] [stderr] Downloaded noodles-core v0.16.0 [INFO] [stderr] Downloaded noodles-gtf v0.52.0 [INFO] [stderr] Downloaded tower-http v0.4.4 [INFO] [stderr] Downloaded noodles-tabix v0.49.0 [INFO] [stderr] Downloaded nom-language v0.1.0 [INFO] [stderr] Downloaded cached_proc_macro v0.27.0 [INFO] [stderr] Downloaded pyo3-build-config v0.28.3 [INFO] [stderr] Downloaded postgres v0.19.12 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded noodles-csi v0.43.0 [INFO] [stderr] Downloaded noodles-bgzf v0.35.0 [INFO] [stderr] Downloaded noodles-csi v0.56.0 [INFO] [stderr] Downloaded noodles-bgzf v0.47.0 [INFO] [stderr] Downloaded cached_proc_macro_types v0.1.1 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded pyo3-macros-backend v0.28.3 [INFO] [stderr] Downloaded pyo3-ffi v0.28.3 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded quick_cache v0.6.18 [INFO] [stderr] Downloaded quote v0.6.13 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded rkyv v0.8.16 [INFO] [stderr] Downloaded cached v0.59.0 [INFO] [stderr] Downloaded proc-macro2 v0.4.30 [INFO] [stderr] Downloaded noodles-vcf v0.73.0 [INFO] [stderr] Downloaded pulldown-cmark v0.13.3 [INFO] [stderr] Downloaded proptest v1.9.0 [INFO] [stderr] Downloaded syn v0.15.44 [INFO] [stderr] Downloaded biocommons-bioutils v0.2.0 [INFO] [stderr] Downloaded hgvs v0.22.0 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] [stderr] Downloaded pyo3 v0.28.3 [INFO] [stderr] Downloaded noodles-gff v0.57.0 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c [INFO] running `Command { std: "docker" "start" "4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c" "/opt/rustwide/cargo-home/bin/cargo" "+df1ae0f7dd168513de2d89beb2cb7a95d4fdc118" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c" "/opt/rustwide/cargo-home/bin/cargo" "+df1ae0f7dd168513de2d89beb2cb7a95d4fdc118" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Compiling libc v0.2.178 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Checking indexmap v2.12.1 [INFO] [stderr] Checking slab v0.4.11 [INFO] [stderr] Checking simd-adler32 v0.3.8 [INFO] [stderr] Compiling find-msvc-tools v0.1.5 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Checking lexical-util v1.0.7 [INFO] [stderr] Compiling zerocopy v0.8.31 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking rustls-pki-types v1.13.2 [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Compiling rustls v0.23.35 [INFO] [stderr] Checking http v1.4.0 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking zlib-rs v0.6.3 [INFO] [stderr] Checking regex-syntax v0.8.8 [INFO] [stderr] Compiling cc v1.2.50 [INFO] [stderr] Checking lexical-parse-integer v1.0.6 [INFO] [stderr] Checking lexical-write-integer v1.0.6 [INFO] [stderr] Checking compression-core v0.4.31 [INFO] [stderr] Checking noodles-core v0.16.0 [INFO] [stderr] Checking noodles-core v0.20.0 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Checking simdutf8 v0.1.5 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Checking lexical-parse-float v1.0.6 [INFO] [stderr] Checking bit-vec v0.9.1 [INFO] [stderr] Checking flate2 v1.1.5 [INFO] [stderr] Checking lexical-write-float v1.0.6 [INFO] [stderr] Checking clap_builder v4.5.53 [INFO] [stderr] Checking socket2 v0.6.1 [INFO] [stderr] Checking mio v1.1.1 [INFO] [stderr] Compiling syn v2.0.111 [INFO] [stderr] Checking http-body v1.0.1 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Checking getrandom v0.3.4 [INFO] [stderr] Checking noodles-bgzf v0.35.0 [INFO] [stderr] Checking compression-codecs v0.4.36 [INFO] [stderr] Checking lexical-core v1.0.6 [INFO] [stderr] Checking http-body-util v0.1.3 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling toml_parser v1.0.6+spec-1.1.0 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking webpki-roots v1.0.4 [INFO] [stderr] Compiling toml_datetime v0.7.5+spec-1.1.0 [INFO] [stderr] Checking noodles-csi v0.43.0 [INFO] [stderr] Checking noodles-bgzf v0.47.0 [INFO] [stderr] Checking iri-string v0.7.9 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Compiling rstest_macros v0.23.0 [INFO] [stderr] Checking tokio v1.48.0 [INFO] [stderr] Checking noodles-csi v0.56.0 [INFO] [stderr] Checking noodles-tabix v0.49.0 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Compiling toml_edit v0.23.10+spec-1.0.0 [INFO] [stderr] Checking iana-time-zone v0.1.64 [INFO] [stderr] Checking plotters-backend v0.3.7 [INFO] [stderr] Checking noodles-gff v0.57.0 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Checking noodles-vcf v0.73.0 [INFO] [stderr] Checking lru v0.12.5 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking plotters-svg v0.3.7 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking memmap2 v0.9.9 [INFO] [stderr] Checking noodles-gtf v0.52.0 [INFO] [stderr] Checking wait-timeout v0.2.1 [INFO] [stderr] Compiling proc-macro-crate v3.4.0 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Checking smol_str v0.3.6 [INFO] [stderr] Checking nom v8.0.0 [INFO] [stderr] Checking rustc-hash v2.1.1 [INFO] [stderr] Checking cast v0.3.0 [INFO] [stderr] Compiling relative-path v1.9.3 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Compiling pulldown-cmark v0.13.3 [INFO] [stderr] Checking plotters v0.3.7 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Checking rand_xorshift v0.4.0 [INFO] [stderr] Checking is-terminal v0.4.17 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking oorandom v11.1.5 [INFO] [stderr] Checking anes v0.1.6 [INFO] [stderr] Checking futures-timer v3.0.3 [INFO] [stderr] Checking unarray v0.1.4 [INFO] [stderr] Checking sha2 v0.10.9 [INFO] [stderr] Checking criterion-plot v0.5.0 [INFO] [stderr] Checking tempfile v3.23.0 [INFO] [stderr] Checking rusty-fork v0.3.1 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Checking tokio-util v0.7.17 [INFO] [stderr] Checking async-compression v0.4.37 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.1 [INFO] [stderr] Compiling zerovec-derive v0.11.2 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Compiling zerocopy-derive v0.8.31 [INFO] [stderr] Compiling ptr_meta_derive v0.3.1 [INFO] [stderr] Compiling bytecheck_derive v0.8.2 [INFO] [stderr] Compiling munge_macro v0.4.7 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling rkyv_derive v0.8.16 [INFO] [stderr] Checking h2 v0.4.13 [INFO] [stderr] Checking ptr_meta v0.3.1 [INFO] [stderr] Checking rancor v0.1.1 [INFO] [stderr] Checking rustls-webpki v0.103.8 [INFO] [stderr] Checking munge v0.4.7 [INFO] [stderr] Checking bytecheck v0.8.2 [INFO] [stderr] Checking rend v0.5.3 [INFO] [stderr] Checking futures-util v0.3.31 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking yoke v0.8.1 [INFO] [stderr] Checking zerovec v0.11.5 [INFO] [stderr] Checking zerotrie v0.2.3 [INFO] [stderr] Checking thiserror v2.0.17 [INFO] [stderr] Checking clap v4.5.53 [INFO] [stderr] Checking tinystr v0.8.2 [INFO] [stderr] Checking potential_utf v0.1.4 [INFO] [stderr] Checking icu_collections v2.1.1 [INFO] [stderr] Checking icu_locale_core v2.1.1 [INFO] [stderr] Checking hyper v1.8.1 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking icu_provider v2.1.1 [INFO] [stderr] Checking half v2.7.1 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking superintervals v0.3.1 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking serde_yaml v0.9.34+deprecated [INFO] [stderr] Checking icu_properties v2.1.2 [INFO] [stderr] Checking icu_normalizer v2.1.1 [INFO] [stderr] Checking tower v0.5.2 [INFO] [stderr] Checking futures-executor v0.3.31 [INFO] [stderr] Checking futures v0.3.31 [INFO] [stderr] Checking ciborium-ll v0.2.2 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking rstest v0.23.0 [INFO] [stderr] Checking hyper-util v0.1.19 [INFO] [stderr] Checking ciborium v0.2.2 [INFO] [stderr] Checking tower-http v0.6.8 [INFO] [stderr] Checking proptest v1.9.0 [INFO] [stderr] Checking tokio-rustls v0.26.4 [INFO] [stderr] Checking criterion v0.5.1 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking url v2.5.7 [INFO] [stderr] Checking rkyv v0.8.16 [INFO] [stderr] Checking hyper-rustls v0.27.7 [INFO] [stderr] Checking reqwest v0.12.28 [INFO] [stderr] Checking ferro-hgvs v0.9.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 02s [INFO] running `Command { std: "docker" "inspect" "4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c", kill_on_drop: false }` [INFO] [stdout] 4e0bd77d446a8f88ae2f8b9990b3b1ba59550f55bab11c5a5ec080dc5bedec3c