[INFO] cloning repository https://github.com/fulcrumgenomics/fgumi
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fulcrumgenomics/fgumi" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 356ff2d0938070c2a3abe801b2a3922f464e1f31
[INFO] checking fulcrumgenomics/fgumi against e3607d549209cc9fdfe7e907123b4185210e2c2b for pr-158915
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Ffgumi" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-1-tc2/source/.cargo/config.toml
[INFO] removed /workspace/builds/worker-1-tc2/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/fulcrumgenomics/fgumi
[INFO] finished tweaking git repo https://github.com/fulcrumgenomics/fgumi
[INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/fgumi written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/fulcrumgenomics/fgumi on toolchain e3607d549209cc9fdfe7e907123b4185210e2c2b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e3607d549209cc9fdfe7e907123b4185210e2c2b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/fulcrumgenomics/fgumi already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e3607d549209cc9fdfe7e907123b4185210e2c2b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `fgumi-cli-common`
[INFO] [stderr]    --> Cargo.toml:317:25
[INFO] [stderr]     |
[INFO] [stderr] 317 | [workspace.dependencies.fgumi-cli-common]
[INFO] [stderr]     |                         ^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `fgumi-cli-common`
[INFO] [stderr] warning: workspace (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/fgumi-bam-io/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `fgumi-bam-io` (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]    --> Cargo.toml:230:1
[INFO] [stderr]     |
[INFO] [stderr] 230 | readme = "README.md"
[INFO] [stderr]     | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:227:12
[INFO] [stderr]     |
[INFO] [stderr] 227 | homepage = "https://github.com/fulcrumgenomics/fgumi"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 238 | [package.repository]
[INFO] [stderr]     | --------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `fgumi` (manifest) generated 2 warnings
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/fgumi-sort/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `fgumi-sort` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6
[INFO] running `Command { std: "docker" "start" "31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6" "/opt/rustwide/cargo-home/bin/cargo" "+e3607d549209cc9fdfe7e907123b4185210e2c2b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6" "/opt/rustwide/cargo-home/bin/cargo" "+e3607d549209cc9fdfe7e907123b4185210e2c2b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: unused workspace dependency `fgumi-cli-common`
[INFO] [stderr]    --> Cargo.toml:317:25
[INFO] [stderr]     |
[INFO] [stderr] 317 | [workspace.dependencies.fgumi-cli-common]
[INFO] [stderr]     |                         ^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::unused_workspace_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the workspace dependency `fgumi-cli-common`
[INFO] [stderr] warning: workspace (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/fgumi-bam-io/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `fgumi-bam-io` (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]  --> crates/fgumi-sort/Cargo.toml:9:1
[INFO] [stderr]   |
[INFO] [stderr] 9 | readme = "README.md"
[INFO] [stderr]   | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `fgumi-sort` (manifest) generated 1 warning
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]    --> Cargo.toml:230:1
[INFO] [stderr]     |
[INFO] [stderr] 230 | readme = "README.md"
[INFO] [stderr]     | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:227:12
[INFO] [stderr]     |
[INFO] [stderr] 227 | homepage = "https://github.com/fulcrumgenomics/fgumi"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 238 | [package.repository]
[INFO] [stderr]     | --------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `fgumi` (manifest) generated 2 warnings
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]     Checking regex-syntax v0.8.11
[INFO] [stderr]     Checking either v1.18.0
[INFO] [stderr]    Compiling quote v1.0.47
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]     Checking aho-corasick v1.1.5
[INFO] [stderr]    Compiling serde v1.0.229
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking zlib-rs v0.6.7
[INFO] [stderr]     Checking crossbeam-channel v0.5.16
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]     Checking bit-vec v0.10.1
[INFO] [stderr]     Checking clap_builder v4.6.6
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling regex v1.13.1
[INFO] [stderr]     Checking log v0.4.34
[INFO] [stderr]    Compiling crc32fast v1.5.1
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking rand v0.9.5
[INFO] [stderr]     Checking rand_xorshift v0.4.0
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]     Checking plotters-backend v0.3.7
[INFO] [stderr]     Checking ciborium-io v0.2.2
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking plotters-svg v0.3.7
[INFO] [stderr]    Compiling syn v3.0.4
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]     Checking cast v0.3.0
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]     Checking page_size v0.6.0
[INFO] [stderr]     Checking anes v0.1.6
[INFO] [stderr]    Compiling cfg_aliases v0.2.2
[INFO] [stderr]     Checking oorandom v11.1.5
[INFO] [stderr]    Compiling nix v0.31.3
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking crossbeam-queue v0.3.13
[INFO] [stderr]     Checking bytesize v2.7.0
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]    Compiling bitflags v2.13.1
[INFO] [stderr]    Compiling cc v1.4.4
[INFO] [stderr]     Checking num-integer v0.1.47
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking sysinfo v0.38.4
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]     Checking jiff-core v0.1.0
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking fgumi-simd-fastq v0.7.0 (/opt/rustwide/workdir/crates/fgumi-simd-fastq)
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking which v8.0.5
[INFO] [stderr]    Compiling target-triple v1.0.1
[INFO] [stderr]     Checking glob v0.3.4
[INFO] [stderr]     Checking num-format v0.4.4
[INFO] [stderr]     Checking winnow v1.0.4
[INFO] [stderr]     Checking toml_datetime v1.1.1+spec-1.1.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking jiff v0.2.35
[INFO] [stderr]     Checking criterion-plot v0.8.2
[INFO] [stderr]     Checking memchr v2.8.3
[INFO] [stderr]     Checking voracious_radix_sort v1.2.0
[INFO] [stderr]    Compiling libdeflate-sys v1.26.0
[INFO] [stderr]    Compiling alloca v0.4.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr] error: could not compile `rustix` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/e3607d549209cc9fdfe7e907123b4185210e2c2b/bin/rustc --crate-name rustix --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rustix-1.1.4/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat,unused-externs-silent --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc"' --cfg 'feature="default"' --cfg 'feature="fs"' --cfg 'feature="process"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("all-apis", "alloc", "core", "default", "event", "fs", "io_uring", "libc", "libc_errno", "linux_4_11", "linux_5_1", "linux_5_11", "linux_latest", "mm", "mount", "net", "param", "pipe", "process", "pty", "rand", "runtime", "rustc-dep-of-std", "rustc-std-workspace-alloc", "shm", "std", "stdio", "system", "termios", "thread", "time", "try_close", "use-explicitly-provided-auxv", "use-libc", "use-libc-auxv"))' -C metadata=c2569a62585d80ed -C extra-filename=-546e46bfca1a42ec --out-dir /opt/rustwide/target/debug/build/rustix/546e46bfca1a42ec/out --extern bitflags=/opt/rustwide/target/debug/build/bitflags/12164dedcc9c97c0/out/libbitflags-12164dedcc9c97c0.rmeta --extern linux_raw_sys=/opt/rustwide/target/debug/build/linux-raw-sys/1f734e6100806aec/out/liblinux_raw_sys-1f734e6100806aec.rmeta --cap-lints allow --cap-lints=forbid --force-warn=unused_crate_dependencies --cfg static_assertions --cfg lower_upper_exp_for_non_zero --cfg rustc_diagnostics --cfg linux_raw_dep --cfg linux_raw --cfg linux_like --cfg linux_kernel` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6", kill_on_drop: false }`
[INFO] [stdout] 31432f1668b1716d63f8de90d52c3f6b7e9f7aed599ec133c622c8d1756327a6
