[INFO] fetching crate blobtk 0.8.3...
[INFO] checking blobtk-0.8.3 against e3607d549209cc9fdfe7e907123b4185210e2c2b for pr-158915
[INFO] extracting crate blobtk 0.8.3 into /workspace/builds/worker-5-tc2/source
[INFO] started tweaking crates.io crate blobtk 0.8.3
[INFO] finished tweaking crates.io crate blobtk 0.8.3
[INFO] tweaked toml for crates.io crate blobtk 0.8.3 written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate blobtk 0.8.3 on toolchain e3607d549209cc9fdfe7e907123b4185210e2c2b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e3607d549209cc9fdfe7e907123b4185210e2c2b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate blobtk 0.8.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e3607d549209cc9fdfe7e907123b4185210e2c2b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:177:12
[INFO] [stderr]     |
[INFO] [stderr] 177 | homepage = "https://github.com/blobtoolkit/blobtk"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 183 | repository = "https://github.com/blobtoolkit/blobtk"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: unused build dependency `pyo3-build-config`
[INFO] [stderr]  --> Cargo.toml:5:21
[INFO] [stderr]   |
[INFO] [stderr] 5 | [build-dependencies.pyo3-build-config]
[INFO] [stderr]   |                     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `pyo3-build-config`
[INFO] [stderr] warning: `blobtk` (manifest) generated 2 warnings
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0
[INFO] running `Command { std: "docker" "start" "b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0" "/opt/rustwide/cargo-home/bin/cargo" "+e3607d549209cc9fdfe7e907123b4185210e2c2b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0" "/opt/rustwide/cargo-home/bin/cargo" "+e3607d549209cc9fdfe7e907123b4185210e2c2b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:177:12
[INFO] [stderr]     |
[INFO] [stderr] 177 | homepage = "https://github.com/blobtoolkit/blobtk"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 183 | repository = "https://github.com/blobtoolkit/blobtk"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: unused build dependency `pyo3-build-config`
[INFO] [stderr]  --> Cargo.toml:5:21
[INFO] [stderr]   |
[INFO] [stderr] 5 | [build-dependencies.pyo3-build-config]
[INFO] [stderr]   |                     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `pyo3-build-config`
[INFO] [stderr] warning: `blobtk` (manifest) generated 2 warnings
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]    Compiling libc v0.2.178
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[INFO] [stderr]     Checking resvg v0.31.1
[INFO] [stderr]     Checking trie-rs v0.1.1
[INFO] [stderr]     Checking unicode-normalization v0.1.25
[INFO] [stderr]     Checking thiserror v2.0.19
[INFO] [stderr]     Checking nucleo-matcher v0.3.1
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[INFO] [stderr]     Checking colorous v1.0.16
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[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking glob v0.3.3
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
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[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling tokio-macros v2.6.0
[INFO] [stderr]    Compiling equator-macro v0.4.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling rustls v0.21.12
[INFO] [stderr]    Compiling profiling-procmacros v1.0.17
[INFO] [stderr]    Compiling zerocopy-derive v0.8.31
[INFO] [stderr]     Checking equator v0.4.2
[INFO] [stderr]     Checking profiling v1.0.17
[INFO] [stderr]    Compiling num-derive v0.4.2
[INFO] [stderr]    Compiling arg_enum_proc_macro v0.3.4
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[INFO] [stderr]     Checking aligned-vec v0.6.4
[INFO] [stderr]     Checking zerofrom v0.1.6
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[INFO] [stderr]     Checking yoke v0.8.1
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[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking av1-grain v0.2.5
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking nalgebra v0.31.4
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[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]    Compiling schemars_derive v0.8.22
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking rustls-webpki v0.101.7
[INFO] [stderr]     Checking sct v0.7.1
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]    Compiling darling v0.20.11
[INFO] [stderr]    Compiling serde_with_macros v2.3.3
[INFO] [stderr]     Checking struct_iterable v0.1.1
[INFO] [stderr]     Checking rav1e v0.7.1
[INFO] [stderr]     Checking env_logger v0.11.8
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking clap v4.5.53
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking exr v1.74.0
[INFO] [stderr]     Checking serde_urlencoded v0.7.1
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[INFO] [stderr]     Checking serde_with v2.3.3
[INFO] [stderr]     Checking serde_yaml v0.9.34+deprecated
[INFO] [stderr]     Checking schemars v0.8.22
[INFO] [stderr]     Checking serde-aux v4.7.0
[INFO] [stderr]     Checking cpc v1.9.3
[INFO] [stderr]     Checking idna_adapter v1.2.1
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[INFO] [stderr]     Checking tokio-rustls v0.24.1
[INFO] [stderr]     Checking hyper v1.8.1
[INFO] [stderr]     Checking tower v0.5.2
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.7
[INFO] [stderr]     Checking h2 v0.3.27
[INFO] [stderr]     Checking hyper-util v0.1.19
[INFO] [stderr]     Checking axum v0.8.7
[INFO] [stderr]     Checking coord_transforms v1.4.0
[INFO] [stderr]     Checking ravif v0.11.20
[INFO] [stderr]     Checking image v0.25.6
[INFO] [stderr]     Checking hyper v0.14.32
[INFO] [stderr]     Checking hyper-rustls v0.24.2
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[INFO] [stderr]     Checking rust-htslib v1.0.1
[INFO] [stderr]     Checking blobtk v0.8.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated constant `std::f64::INFINITY`: replaced by the `INFINITY` associated constant on `f64`
[INFO] [stdout]  --> src/blobdir.rs:3:16
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::f64::{INFINITY, NEG_INFINITY};
[INFO] [stdout]   |                ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::NEG_INFINITY`: replaced by the `NEG_INFINITY` associated constant on `f64`
[INFO] [stdout]  --> src/blobdir.rs:3:26
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::f64::{INFINITY, NEG_INFINITY};
[INFO] [stdout]   |                          ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::INFINITY`: replaced by the `INFINITY` associated constant on `f64`
[INFO] [stdout]    --> src/blobdir.rs:596:25
[INFO] [stdout]     |
[INFO] [stdout] 596 |     let mut min_value = INFINITY;
[INFO] [stdout]     |                         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::NEG_INFINITY`: replaced by the `NEG_INFINITY` associated constant on `f64`
[INFO] [stdout]    --> src/blobdir.rs:597:25
[INFO] [stdout]     |
[INFO] [stdout] 597 |     let mut max_value = NEG_INFINITY;
[INFO] [stdout]     |                         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::INFINITY`: replaced by the `INFINITY` associated constant on `f64`
[INFO] [stdout]    --> src/blobdir.rs:652:25
[INFO] [stdout]     |
[INFO] [stdout] 652 |     let mut min_value = INFINITY as usize;
[INFO] [stdout]     |                         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::NEG_INFINITY`: replaced by the `NEG_INFINITY` associated constant on `f64`
[INFO] [stdout]    --> src/blobdir.rs:653:25
[INFO] [stdout]     |
[INFO] [stdout] 653 |     let mut max_value = NEG_INFINITY as usize;
[INFO] [stdout]     |                         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::INFINITY`: replaced by the `INFINITY` associated constant on `f64`
[INFO] [stdout]  --> src/blobdir.rs:3:16
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::f64::{INFINITY, NEG_INFINITY};
[INFO] [stdout]   |                ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::NEG_INFINITY`: replaced by the `NEG_INFINITY` associated constant on `f64`
[INFO] [stdout]  --> src/blobdir.rs:3:26
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::f64::{INFINITY, NEG_INFINITY};
[INFO] [stdout]   |                          ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::INFINITY`: replaced by the `INFINITY` associated constant on `f64`
[INFO] [stdout]    --> src/blobdir.rs:596:25
[INFO] [stdout]     |
[INFO] [stdout] 596 |     let mut min_value = INFINITY;
[INFO] [stdout]     |                         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::NEG_INFINITY`: replaced by the `NEG_INFINITY` associated constant on `f64`
[INFO] [stdout]    --> src/blobdir.rs:597:25
[INFO] [stdout]     |
[INFO] [stdout] 597 |     let mut max_value = NEG_INFINITY;
[INFO] [stdout]     |                         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::INFINITY`: replaced by the `INFINITY` associated constant on `f64`
[INFO] [stdout]    --> src/blobdir.rs:652:25
[INFO] [stdout]     |
[INFO] [stdout] 652 |     let mut min_value = INFINITY as usize;
[INFO] [stdout]     |                         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::f64::NEG_INFINITY`: replaced by the `NEG_INFINITY` associated constant on `f64`
[INFO] [stdout]    --> src/blobdir.rs:653:25
[INFO] [stdout]     |
[INFO] [stdout] 653 |     let mut max_value = NEG_INFINITY as usize;
[INFO] [stdout]     |                         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `summary_line` is assigned to, but never used
[INFO] [stdout]     --> src/index.rs:1357:13
[INFO] [stdout]      |
[INFO] [stdout] 1357 |         let mut summary_line = String::new();
[INFO] [stdout]      |             ^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: consider using `_summary_line` instead
[INFO] [stdout]      = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `domain`
[INFO] [stdout]     --> src/index.rs:1364:13
[INFO] [stdout]      |
[INFO] [stdout] 1364 |         let domain = String::new();
[INFO] [stdout]      |             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_domain`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `summary_line` is never read
[INFO] [stdout]     --> src/index.rs:1395:17
[INFO] [stdout]      |
[INFO] [stdout] 1395 |                 summary_line = line.trim().to_string();
[INFO] [stdout]      |                 ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout]      = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `summary_line` is assigned to, but never used
[INFO] [stdout]     --> src/index.rs:1357:13
[INFO] [stdout]      |
[INFO] [stdout] 1357 |         let mut summary_line = String::new();
[INFO] [stdout]      |             ^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: consider using `_summary_line` instead
[INFO] [stdout]      = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `domain`
[INFO] [stdout]     --> src/index.rs:1364:13
[INFO] [stdout]      |
[INFO] [stdout] 1364 |         let domain = String::new();
[INFO] [stdout]      |             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_domain`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `summary_line` is never read
[INFO] [stdout]     --> src/index.rs:1395:17
[INFO] [stdout]      |
[INFO] [stdout] 1395 |                 summary_line = line.trim().to_string();
[INFO] [stdout]      |                 ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout]      = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `tax_id`
[INFO] [stdout]    --> src/parse/lookup.rs:514:9
[INFO] [stdout]     |
[INFO] [stdout] 514 |     let tax_id = taxon_id.cloned().unwrap_or_else(|| "None".to_string());
[INFO] [stdout]     |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_tax_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `tax_id`
[INFO] [stdout]    --> src/parse/lookup.rs:514:9
[INFO] [stdout]     |
[INFO] [stdout] 514 |     let tax_id = taxon_id.cloned().unwrap_or_else(|| "None".to_string());
[INFO] [stdout]     |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_tax_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `seq_name`, `bins`, `bin_count`, `last_bin`, `seq_length`, and `step` are never read
[INFO] [stdout]    --> src/bam.rs:130:5
[INFO] [stdout]     |
[INFO] [stdout] 129 | pub struct BinnedCov {
[INFO] [stdout]     |            --------- fields in this struct
[INFO] [stdout] 130 |     seq_name: String,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout] 131 |     bins: Vec<f64>,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout] 132 |     bin_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 133 |     last_bin: usize,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout] 134 |     seq_length: usize,
[INFO] [stdout]     |     ^^^^^^^^^^
[INFO] [stdout] 135 |     step: usize,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BinnedCov` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/index.rs:804:5
[INFO] [stdout]     |
[INFO] [stdout] 793 | struct BuscoResults {
[INFO] [stdout]     |        ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 804 |     n_markers: usize,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 805 |     domain: String,
[INFO] [stdout]     |     ^^^^^^
[INFO] [stdout] 806 |     #[serde(alias = "Number of scaffolds", deserialize_with = "string_or_usize")]
[INFO] [stdout] 807 |     number_of_scaffolds: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 808 |     #[serde(alias = "Number of contigs", deserialize_with = "string_or_usize")]
[INFO] [stdout] 809 |     number_of_contigs: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 810 |     #[serde(alias = "Total length", deserialize_with = "string_or_usize")]
[INFO] [stdout] 811 |     total_length: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 812 |     #[serde(alias = "Percent gaps", deserialize_with = "percent_string_or_f64")]
[INFO] [stdout] 813 |     percent_gaps: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 814 |     #[serde(alias = "Scaffold N50", deserialize_with = "string_or_usize")]
[INFO] [stdout] 815 |     scaffold_n50: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 816 |     #[serde(alias = "Contigs N50", deserialize_with = "string_or_usize")]
[INFO] [stdout] 817 |     contigs_n50: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoResults` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name`, `creation_date`, and `number_of_species` are never read
[INFO] [stdout]    --> src/index.rs:860:5
[INFO] [stdout]     |
[INFO] [stdout] 859 | struct BuscoLineageDataset {
[INFO] [stdout]     |        ------------------- fields in this struct
[INFO] [stdout] 860 |     name: String,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout] 861 |     creation_date: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 865 |     number_of_species: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoLineageDataset` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `hmmsearch`, `bbtools`, `metaeuk`, and `busco` are never read
[INFO] [stdout]    --> src/index.rs:870:5
[INFO] [stdout]     |
[INFO] [stdout] 868 | struct BuscoVersions {
[INFO] [stdout]     |        ------------- fields in this struct
[INFO] [stdout] 869 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 870 |     hmmsearch: String,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 871 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 872 |     bbtools: String,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 873 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 874 |     metaeuk: String,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 875 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 876 |     busco: String,
[INFO] [stdout]     |     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoVersions` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `versions` is never read
[INFO] [stdout]    --> src/index.rs:895:5
[INFO] [stdout]     |
[INFO] [stdout] 892 | struct BuscoSummary {
[INFO] [stdout]     |        ------------ field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 895 |     versions: BuscoVersions,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoSummary` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `max_span` is never read
[INFO] [stdout]    --> src/plot/snail.rs:839:5
[INFO] [stdout]     |
[INFO] [stdout] 838 | struct SnailPlotConfig {
[INFO] [stdout]     |        --------------- field in this struct
[INFO] [stdout] 839 |     max_span: usize,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `SnailPlotConfig` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `seq_name`, `bins`, `bin_count`, `last_bin`, `seq_length`, and `step` are never read
[INFO] [stdout]    --> src/bam.rs:130:5
[INFO] [stdout]     |
[INFO] [stdout] 129 | pub struct BinnedCov {
[INFO] [stdout]     |            --------- fields in this struct
[INFO] [stdout] 130 |     seq_name: String,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout] 131 |     bins: Vec<f64>,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout] 132 |     bin_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 133 |     last_bin: usize,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout] 134 |     seq_length: usize,
[INFO] [stdout]     |     ^^^^^^^^^^
[INFO] [stdout] 135 |     step: usize,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BinnedCov` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/index.rs:804:5
[INFO] [stdout]     |
[INFO] [stdout] 793 | struct BuscoResults {
[INFO] [stdout]     |        ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 804 |     n_markers: usize,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 805 |     domain: String,
[INFO] [stdout]     |     ^^^^^^
[INFO] [stdout] 806 |     #[serde(alias = "Number of scaffolds", deserialize_with = "string_or_usize")]
[INFO] [stdout] 807 |     number_of_scaffolds: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 808 |     #[serde(alias = "Number of contigs", deserialize_with = "string_or_usize")]
[INFO] [stdout] 809 |     number_of_contigs: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 810 |     #[serde(alias = "Total length", deserialize_with = "string_or_usize")]
[INFO] [stdout] 811 |     total_length: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 812 |     #[serde(alias = "Percent gaps", deserialize_with = "percent_string_or_f64")]
[INFO] [stdout] 813 |     percent_gaps: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 814 |     #[serde(alias = "Scaffold N50", deserialize_with = "string_or_usize")]
[INFO] [stdout] 815 |     scaffold_n50: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 816 |     #[serde(alias = "Contigs N50", deserialize_with = "string_or_usize")]
[INFO] [stdout] 817 |     contigs_n50: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoResults` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name`, `creation_date`, and `number_of_species` are never read
[INFO] [stdout]    --> src/index.rs:860:5
[INFO] [stdout]     |
[INFO] [stdout] 859 | struct BuscoLineageDataset {
[INFO] [stdout]     |        ------------------- fields in this struct
[INFO] [stdout] 860 |     name: String,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout] 861 |     creation_date: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 865 |     number_of_species: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoLineageDataset` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `hmmsearch`, `bbtools`, `metaeuk`, and `busco` are never read
[INFO] [stdout]    --> src/index.rs:870:5
[INFO] [stdout]     |
[INFO] [stdout] 868 | struct BuscoVersions {
[INFO] [stdout]     |        ------------- fields in this struct
[INFO] [stdout] 869 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 870 |     hmmsearch: String,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 871 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 872 |     bbtools: String,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 873 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 874 |     metaeuk: String,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 875 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 876 |     busco: String,
[INFO] [stdout]     |     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoVersions` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `versions` is never read
[INFO] [stdout]    --> src/index.rs:895:5
[INFO] [stdout]     |
[INFO] [stdout] 892 | struct BuscoSummary {
[INFO] [stdout]     |        ------------ field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 895 |     versions: BuscoVersions,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoSummary` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `max_span` is never read
[INFO] [stdout]    --> src/plot/snail.rs:839:5
[INFO] [stdout]     |
[INFO] [stdout] 838 | struct SnailPlotConfig {
[INFO] [stdout]     |        --------------- field in this struct
[INFO] [stdout] 839 |     max_span: usize,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `SnailPlotConfig` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] warning: unused dependency `aligned`
[INFO] [stderr]  --> Cargo.toml:8:15
[INFO] [stderr]   |
[INFO] [stderr] 8 | [dependencies.aligned]
[INFO] [stderr]   |               ^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `aligned`
[INFO] [stderr] warning: unused dependency `env_logger`
[INFO] [stderr]   --> Cargo.toml:48:15
[INFO] [stderr]    |
[INFO] [stderr] 48 | [dependencies.env_logger]
[INFO] [stderr]    |               ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `env_logger`
[INFO] [stderr] warning: unused dependency `image`
[INFO] [stderr]   --> Cargo.toml:57:15
[INFO] [stderr]    |
[INFO] [stderr] 57 | [dependencies.image]
[INFO] [stderr]    |               ^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `image`
[INFO] [stderr] warning: unused dependency `nucleo-matcher`
[INFO] [stderr]   --> Cargo.toml:75:15
[INFO] [stderr]    |
[INFO] [stderr] 75 | [dependencies.nucleo-matcher]
[INFO] [stderr]    |               ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `nucleo-matcher`
[INFO] [stderr] warning: unused dependency `trie-rs`
[INFO] [stderr]    --> Cargo.toml:143:15
[INFO] [stderr]     |
[INFO] [stderr] 143 | [dependencies.trie-rs]
[INFO] [stderr]     |               ^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr] help: consider removing the dependency on `trie-rs`
[INFO] [stderr] warning: `blobtk` (manifest) generated 5 warnings
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 35s
[INFO] running `Command { std: "docker" "inspect" "b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0", kill_on_drop: false }`
[INFO] [stdout] b4a82136f129398b47615f34c5692cc01940085e1fa6081587243ec77601c8f0
