[INFO] fetching crate rustybam 0.2.2...
[INFO] checking rustybam-0.2.2 against ed77b7b8699e342c2dc842c83cb5fe4025252ee8 for pr-158915-1
[INFO] extracting crate rustybam 0.2.2 into /workspace/builds/worker-1-tc1/source
[INFO] removed /workspace/builds/worker-1-tc1/source/.cargo/config.toml
[INFO] started tweaking crates.io crate rustybam 0.2.2
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate rustybam 0.2.2
[INFO] tweaked toml for crates.io crate rustybam 0.2.2 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rustybam 0.2.2 on toolchain ed77b7b8699e342c2dc842c83cb5fe4025252ee8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ed77b7b8699e342c2dc842c83cb5fe4025252ee8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rustybam 0.2.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ed77b7b8699e342c2dc842c83cb5fe4025252ee8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: file `/workspace/builds/worker-1-tc1/source/src/main.rs` found to be present in multiple build targets:
[INFO] [stderr]   * `bin` target `rb`
[INFO] [stderr]   * `bin` target `rustybam`
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]    --> Cargo.toml:130:1
[INFO] [stderr]     |
[INFO] [stderr] 130 | readme = "README.md"
[INFO] [stderr]     | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `rustybam` (manifest) generated 2 warnings
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded snap v1.1.2
[INFO] [stderr]   Downloaded zerovec-derive v0.11.4
[INFO] [stderr]   Downloaded zerovec v0.11.7
[INFO] [stderr]   Downloaded core_affinity v0.8.3
[INFO] [stderr]   Downloaded clap_lex v0.2.4
[INFO] [stderr]   Downloaded android_system_properties v0.1.6
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded getset v0.1.7
[INFO] [stderr]   Downloaded natord v1.0.9
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.127
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded unicode-xid v0.1.0
[INFO] [stderr]   Downloaded calmio_filters v0.1.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded calm_io v0.1.1
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.127
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded multimap v0.10.1
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded approx v0.5.1
[INFO] [stderr]   Downloaded nanorand v0.7.0
[INFO] [stderr]   Downloaded strum v0.28.0
[INFO] [stderr]   Downloaded num-complex v0.4.6
[INFO] [stderr]   Downloaded num-rational v0.4.2
[INFO] [stderr]   Downloaded bit-set v0.10.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded libdeflater v0.12.0
[INFO] [stderr]   Downloaded bytecount v0.6.9
[INFO] [stderr]   Downloaded os_str_bytes v6.6.1
[INFO] [stderr]   Downloaded clap_derive v3.2.25
[INFO] [stderr]   Downloaded clap_complete v3.2.5
[INFO] [stderr]   Downloaded crossbeam-deque v0.8.7
[INFO] [stderr]   Downloaded rawpointer v0.2.1
[INFO] [stderr]   Downloaded bit-vec v0.9.1
[INFO] [stderr]   Downloaded find-msvc-tools v0.1.11
[INFO] [stderr]   Downloaded bimap v0.6.3
[INFO] [stderr]   Downloaded csv-core v0.1.13
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded buffer-redux v1.1.0
[INFO] [stderr]   Downloaded strum_macros v0.28.0
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded quote v0.6.13
[INFO] [stderr]   Downloaded either v1.17.0
[INFO] [stderr]   Downloaded niffler v2.7.0
[INFO] [stderr]   Downloaded icu_provider v2.3.0
[INFO] [stderr]   Downloaded strum_macros v0.26.4
[INFO] [stderr]   Downloaded bzip2 v0.4.4
[INFO] [stderr]   Downloaded colored v2.2.0
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded arrayvec v0.7.8
[INFO] [stderr]   Downloaded env_logger v0.9.3
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded ordered-float v5.3.0
[INFO] [stderr]   Downloaded pin-project-internal v1.1.13
[INFO] [stderr]   Downloaded proc-macro2 v0.4.30
[INFO] [stderr]   Downloaded textwrap v0.16.2
[INFO] [stderr]   Downloaded bytemuck v1.25.2
[INFO] [stderr]   Downloaded pin-project v1.1.13
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded matrixmultiply v0.3.11
[INFO] [stderr]   Downloaded num-format v0.4.4
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded flume v0.10.14
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded safe_arch v0.7.4
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.127
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.127
[INFO] [stderr]   Downloaded wide v0.7.33
[INFO] [stderr]   Downloaded cc v1.4.3
[INFO] [stderr]   Downloaded itertools v0.10.5
[INFO] [stderr]   Downloaded js-sys v0.3.104
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.56
[INFO] [stderr]   Downloaded typenum v1.20.1
[INFO] [stderr]   Downloaded num-bigint v0.4.8
[INFO] [stderr]   Downloaded rust-htslib v1.0.1
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded itertools v0.15.0
[INFO] [stderr]   Downloaded rayon v1.12.0
[INFO] [stderr]   Downloaded syn v0.15.44
[INFO] [stderr]   Downloaded portable-atomic v1.15.0
[INFO] [stderr]   Downloaded clap v3.2.25
[INFO] [stderr]   Downloaded bindgen v0.72.1
[INFO] [stderr]   Downloaded libdeflate-sys v0.12.0
[INFO] [stderr]   Downloaded bio v4.0.1
[INFO] [stderr]   Downloaded ndarray v0.17.2
[INFO] [stderr]   Downloaded zerocopy v0.8.56
[INFO] [stderr]   Downloaded nalgebra v0.33.3
[INFO] [stderr]   Downloaded csv v1.4.0
[INFO] [stderr]   Downloaded libz-sys v1.1.29
[INFO] [stderr]   Downloaded curl-sys v0.4.90+curl-8.21.0
[INFO] [stderr]   Downloaded gzp v0.11.3
[INFO] [stderr]   Downloaded hts-sys v2.2.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2
[INFO] running `Command { std: "docker" "start" "a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2" "/opt/rustwide/cargo-home/bin/cargo" "+ed77b7b8699e342c2dc842c83cb5fe4025252ee8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2" "/opt/rustwide/cargo-home/bin/cargo" "+ed77b7b8699e342c2dc842c83cb5fe4025252ee8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets:
[INFO] [stderr]   * `bin` target `rb`
[INFO] [stderr]   * `bin` target `rustybam`
[INFO] [stderr] warning: explicit `package.readme` can be inferred
[INFO] [stderr]    --> Cargo.toml:130:1
[INFO] [stderr]     |
[INFO] [stderr] 130 | readme = "README.md"
[INFO] [stderr]     | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::manual_readme` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.readme`
[INFO] [stderr] warning: `rustybam` (manifest) generated 2 warnings
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]    Compiling quote v1.0.47
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]    Compiling shlex v2.0.1
[INFO] [stderr]    Compiling find-msvc-tools v0.1.11
[INFO] [stderr]    Compiling autocfg v1.5.1
[INFO] [stderr]    Compiling pkg-config v0.3.34
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling memchr v2.8.3
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling zerocopy v0.8.56
[INFO] [stderr]    Compiling glob v0.3.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking litemap v0.8.3
[INFO] [stderr]     Checking writeable v0.6.4
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling aho-corasick v1.1.5
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling clang-sys v1.9.1
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling icu_properties_data v2.3.0
[INFO] [stderr]    Compiling icu_normalizer_data v2.3.0
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling bindgen v0.72.1
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling either v1.17.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling syn v3.0.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling rustversion v1.0.23
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.22
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.47
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling cc v1.4.3
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking smallvec v1.15.2
[INFO] [stderr]    Compiling termcolor v1.4.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.20
[INFO] [stderr]    Compiling bitflags v2.13.1
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]    Compiling rustc-hash v2.1.3
[INFO] [stderr]    Compiling regex-automata v0.4.18
[INFO] [stderr]     Checking simd-adler32 v0.3.10
[INFO] [stderr]    Compiling thiserror v2.0.20
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling os_str_bytes v6.6.1
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling openssl-src v300.6.1+3.6.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.7
[INFO] [stderr]    Compiling once_cell v1.21.4
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling openssl-sys v0.9.117
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling curl-sys v0.4.90+curl-8.21.0
[INFO] [stderr]    Compiling libdeflate-sys v0.12.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.4
[INFO] [stderr]    Compiling displaydoc v0.2.7
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling textwrap v0.16.2
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking regex v1.13.1
[INFO] [stderr]    Compiling snap v1.1.2
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling log v0.4.33
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]    Compiling humantime v2.4.0
[INFO] [stderr]     Checking typenum v1.20.1
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking spin v0.9.9
[INFO] [stderr]    Compiling env_logger v0.9.3
[INFO] [stderr]     Checking nanorand v0.7.0
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking futures-sink v0.3.34
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking futures-core v0.3.34
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]    Compiling anyhow v1.0.104
[INFO] [stderr]     Checking ryu v1.0.23
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking bit-set v0.10.0
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking core_affinity v0.8.3
[INFO] [stderr]    Compiling calmio_filters v0.1.0
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking itertools v0.15.0
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking rand v0.8.7
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.3.0
[INFO] [stderr]     Checking buffer-redux v1.1.0
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking bytes v1.12.1
[INFO] [stderr]     Checking libdeflater v0.12.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking strum v0.28.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking iana-time-zone v0.1.65
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking arrayvec v0.7.8
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking num-format v0.4.4
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking calm_io v0.1.1
[INFO] [stderr]     Checking niffler v2.7.0
[INFO] [stderr]     Checking colored v2.2.0
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling pin-project-internal v1.1.13
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking pin-project v1.1.13
[INFO] [stderr]     Checking flume v0.10.14
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]    Compiling getset v0.1.7
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling strum_macros v0.28.0
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking gzp v0.11.3
[INFO] [stderr]     Checking bimap v0.6.3
[INFO] [stderr]     Checking natord v1.0.9
[INFO] [stderr]     Checking zerofrom v0.1.8
[INFO] [stderr]     Checking yoke v0.8.3
[INFO] [stderr]     Checking zerovec v0.11.7
[INFO] [stderr]     Checking zerotrie v0.2.5
[INFO] [stderr]    Compiling clap_complete v3.2.5
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]    Compiling rustybam v0.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking tinystr v0.8.4
[INFO] [stderr]     Checking potential_utf v0.1.6
[INFO] [stderr]     Checking icu_collections v2.3.0
[INFO] [stderr]     Checking icu_locale_core v2.3.0
[INFO] [stdout] warning: use of deprecated constant `std::usize::MAX`: replaced by the `MAX` associated constant on this type
[INFO] [stdout]    --> src/cli.rs:233:59
[INFO] [stdout]     |
[INFO] [stdout] 233 |         #[clap(short, long, default_value_t = std::usize::MAX)]
[INFO] [stdout]     |                                                           ^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking icu_provider v2.3.0
[INFO] [stderr]     Checking icu_properties v2.3.0
[INFO] [stderr]     Checking icu_normalizer v2.3.0
[INFO] [stderr]    Compiling hts-sys v2.2.1
[INFO] [stderr]     Checking idna_adapter v1.2.2
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v4.0.1
[INFO] [stderr]     Checking rust-htslib v1.0.1
[INFO] [stdout] warning: cannot test inner items
[INFO] [stdout]     --> src/paf.rs:1683:9
[INFO] [stdout]      |
[INFO] [stdout] 1683 |         #[test]
[INFO] [stdout]      |         ^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unnameable_test_items)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: cannot test inner items
[INFO] [stdout]     --> src/paf.rs:1696:9
[INFO] [stdout]      |
[INFO] [stdout] 1696 |         #[test]
[INFO] [stdout]      |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: cannot test inner items
[INFO] [stdout]     --> src/paf.rs:1708:9
[INFO] [stdout]      |
[INFO] [stdout] 1708 |         #[test]
[INFO] [stdout]      |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: cannot test inner items
[INFO] [stdout]     --> src/paf.rs:1720:9
[INFO] [stdout]      |
[INFO] [stdout] 1720 |         #[test]
[INFO] [stdout]      |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::usize::MAX`: replaced by the `MAX` associated constant on this type
[INFO] [stdout]    --> src/cli.rs:233:59
[INFO] [stdout]     |
[INFO] [stdout] 233 |         #[clap(short, long, default_value_t = std::usize::MAX)]
[INFO] [stdout]     |                                                           ^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::usize::MAX`: replaced by the `MAX` associated constant on this type
[INFO] [stdout]    --> src/cli.rs:233:59
[INFO] [stdout]     |
[INFO] [stdout] 233 |         #[clap(short, long, default_value_t = std::usize::MAX)]
[INFO] [stdout]     |                                                           ^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `NO_TAG_LINE` is never used
[INFO] [stdout]     --> src/paf.rs:1681:15
[INFO] [stdout]      |
[INFO] [stdout] 1681 |         const NO_TAG_LINE: &str = "Q\t10\t0\t10\t+\tT\t20\t12\t20\t3\t9\t60";
[INFO] [stdout]      |               ^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `from_file_accepts_paf_without_cigar_tags` is never used
[INFO] [stdout]     --> src/paf.rs:1684:12
[INFO] [stdout]      |
[INFO] [stdout] 1684 |         fn from_file_accepts_paf_without_cigar_tags() {
[INFO] [stdout]      |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `parse_cs_string_truncated_mismatch_is_error` is never used
[INFO] [stdout]     --> src/paf.rs:1697:12
[INFO] [stdout]      |
[INFO] [stdout] 1697 |         fn parse_cs_string_truncated_mismatch_is_error() {
[INFO] [stdout]      |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `truncate_to_empty_interval_is_consistent` is never used
[INFO] [stdout]     --> src/paf.rs:1709:12
[INFO] [stdout]      |
[INFO] [stdout] 1709 |         fn truncate_to_empty_interval_is_consistent() {
[INFO] [stdout]      |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `truncate_to_indel_only_is_consistent` is never used
[INFO] [stdout]     --> src/paf.rs:1721:12
[INFO] [stdout]      |
[INFO] [stdout] 1721 |         fn truncate_to_indel_only_is_consistent() {
[INFO] [stdout]      |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> src/main.rs:209:60
[INFO] [stdout]     |
[INFO] [stdout] 209 |                     let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap();
[INFO] [stdout]     |                                                            ^               ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 209 -                     let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap();
[INFO] [stdout] 209 +                     let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> src/main.rs:209:60
[INFO] [stdout]     |
[INFO] [stdout] 209 |                     let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap();
[INFO] [stdout]     |                                                            ^               ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 209 -                     let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap();
[INFO] [stdout] 209 +                     let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> src/main.rs:209:60
[INFO] [stdout]     |
[INFO] [stdout] 209 |                     let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap();
[INFO] [stdout]     |                                                            ^               ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 209 -                     let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap();
[INFO] [stdout] 209 +                     let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> src/main.rs:209:60
[INFO] [stdout]     |
[INFO] [stdout] 209 |                     let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap();
[INFO] [stdout]     |                                                            ^               ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 209 -                     let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap();
[INFO] [stdout] 209 +                     let largest_rec = group.max_by_key(|p| p.t_en - p.t_st).unwrap();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] warning: unused dependency `bimap`
[INFO] [stderr]   --> Cargo.toml:25:15
[INFO] [stderr]    |
[INFO] [stderr] 25 | [dependencies.bimap]
[INFO] [stderr]    |               ^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `bimap`
[INFO] [stderr] warning: unused dependency `calm_io`
[INFO] [stderr]   --> Cargo.toml:34:15
[INFO] [stderr]    |
[INFO] [stderr] 34 | [dependencies.calm_io]
[INFO] [stderr]    |               ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `calm_io`
[INFO] [stderr] warning: unused dependency `chrono`
[INFO] [stderr]   --> Cargo.toml:37:15
[INFO] [stderr]    |
[INFO] [stderr] 37 | [dependencies.chrono]
[INFO] [stderr]    |               ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `chrono`
[INFO] [stderr] warning: unused dependency `clap_complete`
[INFO] [stderr]   --> Cargo.toml:13:21
[INFO] [stderr]    |
[INFO] [stderr] 13 | [build-dependencies.clap_complete]
[INFO] [stderr]    |                     ^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `clap_complete`
[INFO] [stderr] warning: unused dependency `env_logger`
[INFO] [stderr]   --> Cargo.toml:16:21
[INFO] [stderr]    |
[INFO] [stderr] 16 | [build-dependencies.env_logger]
[INFO] [stderr]    |                     ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr] help: consider removing the dependency on `env_logger`
[INFO] [stderr] warning: `rustybam` (manifest) generated 5 warnings
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 28s
[INFO] running `Command { std: "docker" "inspect" "a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2", kill_on_drop: false }`
[INFO] [stdout] a3d3df1d971081157b79d9ac67493fe78d5d58c44e72c0517008f649eccc48e2
