[INFO] cloning repository https://github.com/stela2502/bam_tide
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/bam_tide" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] aeebacad897b26b2467d0d852c01789da319a933
[INFO] checking stela2502/bam_tide against ed77b7b8699e342c2dc842c83cb5fe4025252ee8 for pr-158915-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/bam_tide
[INFO] finished tweaking git repo https://github.com/stela2502/bam_tide
[INFO] tweaked toml for git repo https://github.com/stela2502/bam_tide written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/bam_tide on toolchain ed77b7b8699e342c2dc842c83cb5fe4025252ee8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ed77b7b8699e342c2dc842c83cb5fe4025252ee8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/bam_tide already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ed77b7b8699e342c2dc842c83cb5fe4025252ee8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: binary `illumina_normalizer` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /workspace/builds/worker-7-tc1/source/target/.../illumina_normalizer
[INFO] [stderr]   |                                                  ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `illumina-normalizer`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/illumina_normalizer.rs
[INFO] [stderr] 1 + src/bin/illumina-normalizer.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: binary `sum_up_ont_tab_result` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /workspace/builds/worker-7-tc1/source/target/.../sum_up_ont_tab_result
[INFO] [stderr]   |                                                  ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `sum-up-ont-tab-result`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/sum_up_ont_tab_result.rs
[INFO] [stderr] 1 + src/bin/sum-up-ont-tab-result.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: `bam_tide` (manifest) generated 2 warnings
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/fast_tag_mapper`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/gtf_splice_index`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/rust-htslib.git`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/sc_primer`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/snp-index`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/scdata`
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/hts-sys.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htscodecs.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded stela-int-to-str v0.2.3
[INFO] [stderr]   Downloaded scdata v0.2.3
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded stela-int-to-str v0.1.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded ufmt-write v0.1.0
[INFO] [stderr]   Downloaded assert_cmd v2.2.1
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded attohttpc v0.25.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded libdeflater v0.13.0
[INFO] [stderr]   Downloaded onehot_dna v0.1.0
[INFO] [stderr]   Downloaded ufmt-macros v0.3.0
[INFO] [stderr]   Downloaded read-tag-table v0.1.0
[INFO] [stderr]   Downloaded index_list v0.2.17
[INFO] [stderr]   Downloaded ufmt v0.2.0
[INFO] [stderr]   Downloaded libdeflate-sys v0.13.0
[INFO] [stderr]   Downloaded bigtools v0.5.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b
[INFO] running `Command { std: "docker" "start" "5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b" "/opt/rustwide/cargo-home/bin/cargo" "+ed77b7b8699e342c2dc842c83cb5fe4025252ee8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b" "/opt/rustwide/cargo-home/bin/cargo" "+ed77b7b8699e342c2dc842c83cb5fe4025252ee8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: binary `illumina_normalizer` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /opt/rustwide/target/.../illumina_normalizer
[INFO] [stderr]   |                          ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `illumina-normalizer`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/illumina_normalizer.rs
[INFO] [stderr] 1 + src/bin/illumina-normalizer.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: binary `sum_up_ont_tab_result` should have a kebab-case name
[INFO] [stderr]   |
[INFO] [stderr] 1 | /opt/rustwide/target/.../sum_up_ont_tab_result
[INFO] [stderr]   |                          ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr] help: to change the binary name to `sum-up-ont-tab-result`, convert the file stem
[INFO] [stderr]   |
[INFO] [stderr] 1 - src/bin/sum_up_ont_tab_result.rs
[INFO] [stderr] 1 + src/bin/sum-up-ont-tab-result.rs
[INFO] [stderr]   |
[INFO] [stderr] warning: `bam_tide` (manifest) generated 2 warnings
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking regex-syntax v0.8.10
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking console v0.16.3
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]     Checking arrayvec v0.7.6
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]     Checking unit-prefix v0.5.2
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking chrono v0.4.44
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling bindgen v0.71.1
[INFO] [stderr]     Checking num-format v0.4.4
[INFO] [stderr]     Checking anyhow v1.0.102
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling rustc-hash v2.1.2
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling zerocopy v0.8.48
[INFO] [stderr]     Checking futures-core v0.3.32
[INFO] [stderr]     Checking futures-sink v0.3.32
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking futures-channel v0.3.32
[INFO] [stderr]     Checking base64 v0.21.7
[INFO] [stderr]     Checking stela-int-to-str v0.1.0
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling rustls v0.21.12
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking rustls-pemfile v1.0.4
[INFO] [stderr]     Checking http v0.2.12
[INFO] [stderr]     Checking rustls-native-certs v0.6.3
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking ufmt-write v0.1.0
[INFO] [stderr]     Checking once_cell v1.21.4
[INFO] [stderr]     Checking stela-int-to-str v0.2.3
[INFO] [stderr]    Compiling cc v1.2.61
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking fastrand v2.4.1
[INFO] [stderr]    Compiling assert_cmd v2.2.1
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]     Checking predicates v3.1.4
[INFO] [stderr]     Checking byteordered v0.6.0
[INFO] [stderr]     Checking tokio v1.52.1
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking onehot_dna v0.1.0
[INFO] [stderr]     Checking index_list v0.2.17
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/ed77b7b8699e342c2dc842c83cb5fe4025252ee8/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.117/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat,unused-externs-silent --crate-type lib --emit=dep-info,metadata,link -Z embed-metadata=no -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=38efe9c620ca8d0f -C extra-filename=-ae6c806947fc9697 --out-dir /opt/rustwide/target/debug/build/syn/ae6c806947fc9697/out -L dependency=/opt/rustwide/target/debug/build/proc-macro2/d4cb564e807a9cd7/out -L dependency=/opt/rustwide/target/debug/build/unicode-ident/8c98a1a0e58216a9/out --extern proc_macro2=/opt/rustwide/target/debug/build/proc-macro2/d4cb564e807a9cd7/out/libproc_macro2-d4cb564e807a9cd7.rmeta --extern quote=/opt/rustwide/target/debug/build/quote/aa2c5b8519914b46/out/libquote-aa2c5b8519914b46.rmeta --extern unicode_ident=/opt/rustwide/target/debug/build/unicode-ident/8c98a1a0e58216a9/out/libunicode_ident-8c98a1a0e58216a9.rmeta --cap-lints allow --cap-lints=forbid --force-warn=unused_crate_dependencies` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b", kill_on_drop: false }`
[INFO] [stdout] 5c7aded0eeafbf2bd033f624b1517628739ce87129fb278a15ebc3c588d7f80b
