[INFO] cloning repository https://github.com/ViralSeq/viRust-splicing
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ViralSeq/viRust-splicing" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 2a6cd9d79914aab2d68dfa31c65a1dabadfc0c4d
[INFO] checking ViralSeq/viRust-splicing against f10db292a3733b5c67c8da8c7661195ff4b05774 for pr-158914
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-7-tc1/source/rust-toolchain
[INFO] started tweaking git repo https://github.com/ViralSeq/viRust-splicing
[INFO] finished tweaking git repo https://github.com/ViralSeq/viRust-splicing
[INFO] tweaked toml for git repo https://github.com/ViralSeq/viRust-splicing written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ViralSeq/viRust-splicing on toolchain f10db292a3733b5c67c8da8c7661195ff4b05774
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f10db292a3733b5c67c8da8c7661195ff4b05774" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ViralSeq/viRust-splicing already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f10db292a3733b5c67c8da8c7661195ff4b05774" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded config v0.15.25
[INFO] [stderr]   Downloaded syn v3.0.2
[INFO] [stderr]   Downloaded yaml-rust2 v0.11.0
[INFO] [stderr]   Downloaded itertools v0.15.0
[INFO] [stderr]   Downloaded pest_meta v2.8.7
[INFO] [stderr]   Downloaded pest_derive v2.8.7
[INFO] [stderr]   Downloaded pest_generator v2.8.7
[INFO] [stderr]   Downloaded pest v2.8.7
[INFO] [stderr]   Downloaded ron v0.12.2
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.11
[INFO] [stderr]   Downloaded bio v4.0.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bit-set v0.10.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96
[INFO] running `Command { std: "docker" "start" "a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96" "/opt/rustwide/cargo-home/bin/cargo" "+f10db292a3733b5c67c8da8c7661195ff4b05774" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96" "/opt/rustwide/cargo-home/bin/cargo" "+f10db292a3733b5c67c8da8c7661195ff4b05774" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]    Compiling syn v3.0.2
[INFO] [stderr]    Compiling zerocopy v0.8.55
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]     Checking simd-adler32 v0.3.10
[INFO] [stderr]    Compiling semver v1.0.28
[INFO] [stderr]    Compiling crossbeam-utils v0.8.22
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]    Compiling freetype-sys v0.20.1
[INFO] [stderr]    Compiling yeslogic-fontconfig-sys v6.0.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]     Checking either v1.16.0
[INFO] [stderr]    Compiling memchr v2.8.3
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.20
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking fdeflate v0.3.7
[INFO] [stderr]    Compiling crossbeam-deque v0.8.7
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling font-kit v0.14.3
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking gif v0.12.0
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking dlv-list v0.5.2
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking float-ord v0.3.2
[INFO] [stderr]     Checking winnow v1.0.4
[INFO] [stderr]     Checking ordered-multimap v0.7.3
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking png v0.17.16
[INFO] [stderr]     Checking pest v2.8.7
[INFO] [stderr]     Checking indexmap v2.14.0
[INFO] [stderr]    Compiling pathfinder_simd v0.5.6
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking getrandom v0.4.3
[INFO] [stderr]     Checking arraydeque v0.5.1
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]     Checking rayon-core v1.13.0
[INFO] [stderr]     Checking ttf-parser v0.20.0
[INFO] [stderr]     Checking hashlink v0.11.1
[INFO] [stderr]     Checking pathfinder_geometry v0.5.1
[INFO] [stderr]    Compiling anyhow v1.0.104
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking bit-set v0.10.0
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]     Checking yaml-rust2 v0.11.0
[INFO] [stderr]     Checking image v0.24.9
[INFO] [stderr]     Checking convert_case v0.6.0
[INFO] [stderr]     Checking rand v0.10.2
[INFO] [stderr]     Checking toml_parser v1.1.2+spec-1.1.0
[INFO] [stderr]     Checking rust-ini v0.21.3
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking itertools v0.15.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.3.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking pathdiff v0.2.3
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking rand_distr v0.6.0
[INFO] [stderr]     Checking colored v3.1.1
[INFO] [stderr]    Compiling pest_meta v2.8.7
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]    Compiling alloca v0.4.0
[INFO] [stderr]     Checking bitflags v2.13.1
[INFO] [stderr]     Checking serde_json v1.0.151
[INFO] [stderr]     Checking erased-serde v0.4.10
[INFO] [stderr]     Checking serde_spanned v1.1.1
[INFO] [stderr]     Checking toml_datetime v1.1.1+spec-1.1.0
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking serde-untagged v0.1.9
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking plotters-bitmap v0.3.7
[INFO] [stderr]     Checking toml v1.1.3+spec-1.1.0
[INFO] [stderr]     Checking page_size v0.6.0
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling thiserror-impl v2.0.19
[INFO] [stderr]    Compiling async-trait v0.1.91
[INFO] [stderr]    Compiling pest_generator v2.8.7
[INFO] [stderr]    Compiling zerocopy-derive v0.8.55
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.6.3
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling getset v0.1.7
[INFO] [stderr]     Checking thiserror v2.0.19
[INFO] [stderr]    Compiling pest_derive v2.8.7
[INFO] [stderr]     Checking criterion-plot v0.8.2
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking clap v4.6.3
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking json5 v0.4.1
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking ron v0.12.2
[INFO] [stderr]     Checking tinytemplate v1.2.1
[INFO] [stderr]     Checking config v0.15.25
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.10.0
[INFO] [stderr]     Checking ciborium-ll v0.2.2
[INFO] [stderr]     Checking ciborium v0.2.2
[INFO] [stderr]     Checking rand v0.8.7
[INFO] [stderr]     Checking criterion v0.8.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v4.0.1
[INFO] [stderr]     Checking virust-splicing v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 04s
[INFO] running `Command { std: "docker" "inspect" "a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96", kill_on_drop: false }`
[INFO] [stdout] a96033b2a9f7527c75e2dc51d9a68bc3cf7823e8cea1132339caa6f89b66ac96
