[INFO] cloning repository https://github.com/earth-metabolome-initiative/mgf-species-dataset-creator
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/earth-metabolome-initiative/mgf-species-dataset-creator" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fmgf-species-dataset-creator", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fmgf-species-dataset-creator'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6489aa3c561e0fbcf4b00d24372c09b118a852bc
[INFO] checking earth-metabolome-initiative/mgf-species-dataset-creator/6489aa3c561e0fbcf4b00d24372c09b118a852bc against f10db292a3733b5c67c8da8c7661195ff4b05774 for pr-158914
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fmgf-species-dataset-creator" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/earth-metabolome-initiative/mgf-species-dataset-creator
[INFO] finished tweaking git repo https://github.com/earth-metabolome-initiative/mgf-species-dataset-creator
[INFO] tweaked toml for git repo https://github.com/earth-metabolome-initiative/mgf-species-dataset-creator written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/earth-metabolome-initiative/mgf-species-dataset-creator on toolchain f10db292a3733b5c67c8da8c7661195ff4b05774
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f10db292a3733b5c67c8da8c7661195ff4b05774" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/earth-metabolome-initiative/mgf-species-dataset-creator already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f10db292a3733b5c67c8da8c7661195ff4b05774" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/LucaCappelletti94/mascot-rs`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/earth-metabolome-initiative/mass-spectrometry-traits`
[INFO] [stderr]     Updating git repository `https://github.com/earth-metabolome-initiative/smiles-parser`
[INFO] [stderr]     Updating git repository `https://github.com/earth-metabolome-initiative/geometric-traits`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc-std-workspace-alloc v1.0.1
[INFO] [stderr]   Downloaded zenodo-rs v0.1.7
[INFO] [stderr]   Downloaded client-uploader-traits v0.1.0
[INFO] [stderr]   Downloaded stable_try_trait_v2 v1.75.1
[INFO] [stderr]   Downloaded lender v0.6.2
[INFO] [stderr]   Downloaded molecular-formulas v0.1.10
[INFO] [stderr]   Downloaded elements_rs v0.2.7
[INFO] [stderr]   Downloaded maybe-dangling v0.1.2
[INFO] [stderr]   Downloaded multi_ranged v0.1.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b
[INFO] running `Command { std: "docker" "start" "136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b" "/opt/rustwide/cargo-home/bin/cargo" "+f10db292a3733b5c67c8da8c7661195ff4b05774" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b" "/opt/rustwide/cargo-home/bin/cargo" "+f10db292a3733b5c67c8da8c7661195ff4b05774" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking memchr v2.8.1
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Checking typenum v1.20.0
[INFO] [stderr]     Checking yoke v0.8.2
[INFO] [stderr]     Checking zerovec v0.11.6
[INFO] [stderr]    Compiling aws-lc-rs v1.17.0
[INFO] [stderr]     Checking zerotrie v0.2.4
[INFO] [stderr]     Checking rustls-pki-types v1.14.1
[INFO] [stderr]     Checking http v1.4.1
[INFO] [stderr]     Checking bitflags v2.11.1
[INFO] [stderr]     Checking tinystr v0.8.3
[INFO] [stderr]     Checking potential_utf v0.1.5
[INFO] [stderr]     Checking log v0.4.30
[INFO] [stderr]     Checking icu_locale_core v2.2.0
[INFO] [stderr]     Checking icu_collections v2.2.0
[INFO] [stderr]    Compiling rustls v0.23.40
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling radium v0.7.0
[INFO] [stderr]     Checking slab v0.4.12
[INFO] [stderr]     Checking http-body v1.0.1
[INFO] [stderr]     Checking socket2 v0.6.3
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[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking futures-task v0.3.32
[INFO] [stderr]    Compiling cc v1.2.62
[INFO] [stderr]     Checking futures-util v0.3.32
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling zerocopy v0.8.49
[INFO] [stderr]     Checking tokio v1.52.3
[INFO] [stderr]     Checking icu_provider v2.2.0
[INFO] [stderr]     Checking icu_properties v2.2.0
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]     Checking tap v1.0.1
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]     Checking wyz v0.5.1
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking generic-array v0.14.7
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]     Checking hybrid-array v0.4.12
[INFO] [stderr]    Compiling zerocopy-derive v0.8.49
[INFO] [stderr]     Checking futures-channel v0.3.32
[INFO] [stderr]     Checking idna_adapter v1.2.2
[INFO] [stderr]    Compiling aws-lc-sys v0.41.0
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]     Checking aliasable v0.1.3
[INFO] [stderr]     Checking maybe-dangling v0.1.2
[INFO] [stderr]     Checking fallible-iterator v0.3.0
[INFO] [stderr]     Checking stable_try_trait_v2 v1.75.1
[INFO] [stderr]     Checking funty v2.0.0
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]     Checking lender v0.6.2
[INFO] [stderr]     Checking bitvec v1.0.1
[INFO] [stderr]     Checking rand v0.10.1
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking hyper v1.10.0
[INFO] [stderr]     Checking multi_ranged v0.1.2
[INFO] [stderr]    Compiling strum_macros v0.28.0
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]     Checking rustls-native-certs v0.8.3
[INFO] [stderr]     Checking hyper-util v0.1.20
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking tower v0.5.3
[INFO] [stderr]     Checking block-buffer v0.12.0
[INFO] [stderr]     Checking crypto-common v0.2.2
[INFO] [stderr]     Checking block-buffer v0.10.4
[INFO] [stderr]     Checking crypto-common v0.1.7
[INFO] [stderr]    Compiling mem_dbg-derive v0.3.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking const-oid v0.10.2
[INFO] [stderr]     Checking console v0.16.3
[INFO] [stderr]     Checking digest v0.11.3
[INFO] [stderr]     Checking tokio-util v0.7.18
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]     Checking tower-http v0.6.11
[INFO] [stderr]     Checking getrandom v0.4.2
[INFO] [stderr]     Checking strum v0.28.0
[INFO] [stderr]     Checking serde_urlencoded v0.7.1
[INFO] [stderr]     Checking elements_rs v0.2.7
[INFO] [stderr]     Checking http-body-util v0.1.3
[INFO] [stderr]     Checking unit-prefix v0.5.2
[INFO] [stderr]     Checking rustc-std-workspace-alloc v1.0.1
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking hashbrown v0.17.1
[INFO] [stderr]     Checking chrono v0.4.44
[INFO] [stderr]     Checking indicatif v0.18.4
[INFO] [stderr]     Checking sha2 v0.10.9
[INFO] [stderr]     Checking md-5 v0.11.0
[INFO] [stderr]     Checking client-uploader-traits v0.1.0
[INFO] [stderr]     Checking geometric-traits v0.1.0 (https://github.com/earth-metabolome-initiative/geometric-traits?branch=main#0178cb47)
[INFO] [stderr]     Checking tokio-stream v0.1.18
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking ureq-proto v0.6.0
[INFO] [stderr]     Checking webpki-roots v1.0.7
[INFO] [stderr]     Checking mem_dbg v0.4.1
[INFO] [stderr]     Checking secrecy v0.10.3
[INFO] [stderr]     Checking utf8-zero v0.8.1
[INFO] [stderr]     Checking arbitrary v1.4.2
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking xattr v1.6.1
[INFO] [stderr]     Checking matchers v0.2.0
[INFO] [stderr]     Checking filetime v0.2.29
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking geometric-traits v0.1.0 (https://github.com/earth-metabolome-initiative/geometric-traits#0178cb47)
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking predicates-core v1.0.10
[INFO] [stderr]     Checking tracing-subscriber v0.3.23
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking tar v0.4.46
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]     Checking float-cmp v0.10.0
[INFO] [stderr]     Checking normalize-line-endings v0.3.0
[INFO] [stderr]     Checking termtree v0.5.1
[INFO] [stderr]    Compiling assert_cmd v2.2.2
[INFO] [stderr]     Checking difflib v0.4.0
[INFO] [stderr]     Checking predicates-tree v1.0.13
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking predicates v3.1.4
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking molecular-formulas v0.1.10
[INFO] [stderr]     Checking smiles-parser v0.1.0 (https://github.com/earth-metabolome-initiative/smiles-parser?rev=ad15ce7205f4e3ad842f5eaa153d562f3548bd79#ad15ce72)
[INFO] [stderr]     Checking mass_spectrometry v0.1.0 (https://github.com/earth-metabolome-initiative/mass-spectrometry-traits#bc6a4b3a)
[INFO] [stderr]     Checking rustls-webpki v0.103.13
[INFO] [stderr]     Checking tokio-rustls v0.26.4
[INFO] [stderr]     Checking rustls-platform-verifier v0.7.0
[INFO] [stderr]     Checking ureq v3.3.0
[INFO] [stderr]     Checking hyper-rustls v0.27.9
[INFO] [stderr]     Checking reqwest v0.13.4
[INFO] [stderr]     Checking zenodo-rs v0.1.7
[INFO] [stderr]     Checking mascot-rs v0.1.0 (https://github.com/LucaCappelletti94/mascot-rs#87e6fd79)
[INFO] [stderr]     Checking mgf-species-dataset-creator v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 46s
[INFO] running `Command { std: "docker" "inspect" "136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b", kill_on_drop: false }`
[INFO] [stdout] 136dba857a5a81da34791756bbe8b7991ae6de96a1f439a527e96a3270e9437b
