[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9cb4d8c1296395af550005a385efd7d521aa15f3
[INFO] checking informationsea/sequencetoolkit against master#40557f6225e337d68c8d4f086557ce54135f5dd9 for pr-158447
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 40557f6225e337d68c8d4f086557ce54135f5dd9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+40557f6225e337d68c8d4f086557ce54135f5dd9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+40557f6225e337d68c8d4f086557ce54135f5dd9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded xlsxwriter v0.6.1
[INFO] [stderr]   Downloaded vcf v0.6.1
[INFO] [stderr]   Downloaded pretty_env_logger v0.5.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded temp-file v0.1.9
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded autocompress v0.6.0
[INFO] [stderr]   Downloaded clap v4.5.55
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.35
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded nom v5.1.3
[INFO] [stderr]   Downloaded clap_builder v4.5.55
[INFO] [stderr]   Downloaded zerocopy v0.8.35
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.7
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 4ab279c2db04adc65a433d40213fb1e3f98d9648bdb1e47f0a971f3fb06a2f6f
[INFO] running `Command { std: "docker" "start" "4ab279c2db04adc65a433d40213fb1e3f98d9648bdb1e47f0a971f3fb06a2f6f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4ab279c2db04adc65a433d40213fb1e3f98d9648bdb1e47f0a971f3fb06a2f6f" "/opt/rustwide/cargo-home/bin/cargo" "+40557f6225e337d68c8d4f086557ce54135f5dd9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4ab279c2db04adc65a433d40213fb1e3f98d9648bdb1e47f0a971f3fb06a2f6f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4ab279c2db04adc65a433d40213fb1e3f98d9648bdb1e47f0a971f3fb06a2f6f" "/opt/rustwide/cargo-home/bin/cargo" "+40557f6225e337d68c8d4f086557ce54135f5dd9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling zerocopy v0.8.35
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]     Checking flate2 v1.1.8
[INFO] [stderr]     Checking clap_builder v4.5.55
[INFO] [stderr]     Checking tokio v1.49.0
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking bgzip v0.3.1
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling cc v1.2.54
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking itertools v0.12.1
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr] error: could not compile `zerocopy` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/40557f6225e337d68c8d4f086557ce54135f5dd9/bin/rustc --crate-name zerocopy --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/zerocopy-0.8.35/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="simd"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("__internal_use_only_features_that_work_on_stable", "alloc", "derive", "float-nightly", "simd", "simd-nightly", "std", "zerocopy-derive"))' -C metadata=e09641ae625fe049 -C extra-filename=-8e903f6a0bbffbde --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --cap-lints allow --cap-lints=forbid --check-cfg 'cfg(no_zerocopy_simd_x86_avx12_1_89_0)' --check-cfg 'cfg(rust, values("1.89.0"))' --check-cfg 'cfg(no_zerocopy_core_error_1_81_0)' --check-cfg 'cfg(rust, values("1.81.0"))' --check-cfg 'cfg(no_zerocopy_diagnostic_on_unimplemented_1_78_0)' --check-cfg 'cfg(rust, values("1.78.0"))' --check-cfg 'cfg(no_zerocopy_generic_bounds_in_const_fn_1_61_0)' --check-cfg 'cfg(rust, values("1.61.0"))' --check-cfg 'cfg(no_zerocopy_target_has_atomics_1_60_0)' --check-cfg 'cfg(rust, values("1.60.0"))' --check-cfg 'cfg(no_zerocopy_aarch64_simd_1_59_0)' --check-cfg 'cfg(rust, values("1.59.0"))' --check-cfg 'cfg(no_zerocopy_panic_in_const_and_vec_try_reserve_1_57_0)' --check-cfg 'cfg(rust, values("1.57.0"))' --check-cfg 'cfg(doc_cfg)' --check-cfg 'cfg(kani)' --check-cfg 'cfg(__ZEROCOPY_INTERNAL_USE_ONLY_NIGHTLY_FEATURES_IN_TESTS)' --check-cfg 'cfg(coverage_nightly)'` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "4ab279c2db04adc65a433d40213fb1e3f98d9648bdb1e47f0a971f3fb06a2f6f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4ab279c2db04adc65a433d40213fb1e3f98d9648bdb1e47f0a971f3fb06a2f6f", kill_on_drop: false }`
[INFO] [stdout] 4ab279c2db04adc65a433d40213fb1e3f98d9648bdb1e47f0a971f3fb06a2f6f
