[INFO] cloning repository https://github.com/dnncha/turbo-picard
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/dnncha/turbo-picard" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdnncha%2Fturbo-picard", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdnncha%2Fturbo-picard'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ea545bea4adcfb8bf69fe80d02ed9c66e5a22304
[INFO] checking dnncha/turbo-picard against master#485ec3fbcc12fa14ef6596dabb125ad710499c9e for pr-157710
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdnncha%2Fturbo-picard" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/dnncha/turbo-picard
[INFO] finished tweaking git repo https://github.com/dnncha/turbo-picard
[INFO] tweaked toml for git repo https://github.com/dnncha/turbo-picard written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/dnncha/turbo-picard on toolchain 485ec3fbcc12fa14ef6596dabb125ad710499c9e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+485ec3fbcc12fa14ef6596dabb125ad710499c9e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/dnncha/turbo-picard already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+485ec3fbcc12fa14ef6596dabb125ad710499c9e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded yoke v0.8.2
[INFO] [stderr]   Downloaded quick-error v1.2.3
[INFO] [stderr]   Downloaded rust-htslib v1.0.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded either v1.16.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded wit-bindgen-rust-macro v0.51.0
[INFO] [stderr]   Downloaded id-arena v2.3.0
[INFO] [stderr]   Downloaded leb128fmt v0.1.0
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[INFO] [stderr]   Downloaded glob v0.3.3
[INFO] [stderr]   Downloaded lazycell v1.3.0
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded md5 v0.8.0
[INFO] [stderr]   Downloaded predicates-core v1.0.10
[INFO] [stderr]   Downloaded normalize-line-endings v0.3.0
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[INFO] [stderr]   Downloaded difflib v0.4.0
[INFO] [stderr]   Downloaded md5 v0.7.0
[INFO] [stderr]   Downloaded wait-timeout v0.2.1
[INFO] [stderr]   Downloaded predicates-tree v1.0.13
[INFO] [stderr]   Downloaded cexpr v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded wasm-metadata v0.244.0
[INFO] [stderr]   Downloaded predicates v3.1.4
[INFO] [stderr]   Downloaded autocfg v1.5.1
[INFO] [stderr]   Downloaded assert_cmd v2.2.2
[INFO] [stderr]   Downloaded termtree v0.5.1
[INFO] [stderr]   Downloaded semver v1.0.28
[INFO] [stderr]   Downloaded libloading v0.8.9
[INFO] [stderr]   Downloaded wit-bindgen-core v0.51.0
[INFO] [stderr]   Downloaded clang-sys v1.8.1
[INFO] [stderr]   Downloaded getrandom v0.4.2
[INFO] [stderr]   Downloaded wit-bindgen v0.51.0
[INFO] [stderr]   Downloaded wit-bindgen-rust v0.51.0
[INFO] [stderr]   Downloaded r-efi v6.0.0
[INFO] [stderr]   Downloaded openssl-sys v0.9.116
[INFO] [stderr]   Downloaded cc v1.2.62
[INFO] [stderr]   Downloaded memchr v2.8.0
[INFO] [stderr]   Downloaded wasm-encoder v0.244.0
[INFO] [stderr]   Downloaded itertools v0.12.1
[INFO] [stderr]   Downloaded prettyplease v0.2.37
[INFO] [stderr]   Downloaded regex v1.12.3
[INFO] [stderr]   Downloaded wasip3 v0.4.0+wasi-0.3.0-rc-2026-01-06
[INFO] [stderr]   Downloaded wit-parser v0.244.0
[INFO] [stderr]   Downloaded bindgen v0.69.5
[INFO] [stderr]   Downloaded wit-component v0.244.0
[INFO] [stderr]   Downloaded wasmparser v0.244.0
[INFO] [stderr]   Downloaded bstr v1.12.1
[INFO] [stderr]   Downloaded bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]   Downloaded libz-sys v1.1.28
[INFO] [stderr]   Downloaded curl-sys v0.4.88+curl-8.20.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.6.0+3.6.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 9840d2b64b17c8ac908b6139ac98c3e39f80d508b7c84ed7e78f2da4bbb7bb5e
[INFO] running `Command { std: "docker" "start" "9840d2b64b17c8ac908b6139ac98c3e39f80d508b7c84ed7e78f2da4bbb7bb5e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "9840d2b64b17c8ac908b6139ac98c3e39f80d508b7c84ed7e78f2da4bbb7bb5e" "/opt/rustwide/cargo-home/bin/cargo" "+485ec3fbcc12fa14ef6596dabb125ad710499c9e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9840d2b64b17c8ac908b6139ac98c3e39f80d508b7c84ed7e78f2da4bbb7bb5e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "9840d2b64b17c8ac908b6139ac98c3e39f80d508b7c84ed7e78f2da4bbb7bb5e" "/opt/rustwide/cargo-home/bin/cargo" "+485ec3fbcc12fa14ef6596dabb125ad710499c9e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling unicode-ident v1.0.24
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling find-msvc-tools v0.1.9
[INFO] [stderr]    Compiling pkg-config v0.3.33
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]     Checking memchr v2.8.0
[INFO] [stderr]     Checking writeable v0.6.3
[INFO] [stderr]     Checking litemap v0.8.2
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling icu_normalizer_data v2.2.0
[INFO] [stderr]     Checking utf8_iter v1.0.4
[INFO] [stderr]    Compiling icu_properties_data v2.2.0
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling either v1.16.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking md5 v0.8.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling autocfg v1.5.1
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]     Checking once_cell v1.21.4
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]     Checking simd-adler32 v0.3.9
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]     Checking fastrand v2.4.1
[INFO] [stderr]     Checking predicates-core v1.0.10
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking md5 v0.7.0
[INFO] [stderr]     Checking rustc-hash v2.1.2
[INFO] [stderr]     Checking termtree v0.5.1
[INFO] [stderr]    Compiling assert_cmd v2.2.2
[INFO] [stderr]     Checking normalize-line-endings v0.3.0
[INFO] [stderr]     Checking anstyle v1.0.14
[INFO] [stderr]     Checking difflib v0.4.0
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling cc v1.2.62
[INFO] [stderr]     Checking predicates-tree v1.0.13
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking float-cmp v0.10.0
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling openssl-src v300.6.0+3.6.2
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling openssl-sys v0.9.116
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.88+curl-8.20.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking predicates v3.1.4
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zerofrom-derive v0.1.7
[INFO] [stderr]    Compiling yoke-derive v0.8.2
[INFO] [stderr]    Compiling zerovec-derive v0.11.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking zerofrom v0.1.8
[INFO] [stderr]     Checking yoke v0.8.2
[INFO] [stderr]     Checking zerotrie v0.2.4
[INFO] [stderr]     Checking zerovec v0.11.6
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking tinystr v0.8.3
[INFO] [stderr]     Checking potential_utf v0.1.5
[INFO] [stderr]     Checking icu_collections v2.2.0
[INFO] [stderr]     Checking icu_locale_core v2.2.0
[INFO] [stderr]     Checking icu_provider v2.2.0
[INFO] [stderr]     Checking icu_properties v2.2.0
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.2
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking rust-htslib v1.0.0
[INFO] [stderr]     Checking turbo-picard-core v0.1.5 (/opt/rustwide/workdir/crates/turbo-picard-core)
[INFO] [stderr]     Checking turbo-picard-markdup v0.1.5 (/opt/rustwide/workdir/crates/turbo-picard-markdup)
[INFO] [stderr]     Checking turbo-picard-cli v0.1.5 (/opt/rustwide/workdir/crates/turbo-picard-cli)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 25s
[INFO] running `Command { std: "docker" "inspect" "9840d2b64b17c8ac908b6139ac98c3e39f80d508b7c84ed7e78f2da4bbb7bb5e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9840d2b64b17c8ac908b6139ac98c3e39f80d508b7c84ed7e78f2da4bbb7bb5e", kill_on_drop: false }`
[INFO] [stdout] 9840d2b64b17c8ac908b6139ac98c3e39f80d508b7c84ed7e78f2da4bbb7bb5e
