[INFO] cloning repository https://github.com/URI-ABD/genomic_distance
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/URI-ABD/genomic_distance" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FURI-ABD%2Fgenomic_distance", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FURI-ABD%2Fgenomic_distance'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4c1b7afcda5ed9dd2d4704269275c7dcff4fae7d
[INFO] checking URI-ABD/genomic_distance against master#029c9e18dd1f4668e1d42bb187c1c263dfe20093 for pr-157562
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FURI-ABD%2Fgenomic_distance" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/URI-ABD/genomic_distance
[INFO] finished tweaking git repo https://github.com/URI-ABD/genomic_distance
[INFO] tweaked toml for git repo https://github.com/URI-ABD/genomic_distance written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/URI-ABD/genomic_distance on toolchain 029c9e18dd1f4668e1d42bb187c1c263dfe20093
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+029c9e18dd1f4668e1d42bb187c1c263dfe20093" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/URI-ABD/genomic_distance already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+029c9e18dd1f4668e1d42bb187c1c263dfe20093" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded time-macros v0.1.0
[INFO] [stderr]   Downloaded rustversion v1.0.2
[INFO] [stderr]   Downloaded time-macros-impl v0.1.0
[INFO] [stderr]   Downloaded standback v0.2.2
[INFO] [stderr]   Downloaded time v0.2.9
[INFO] [stderr]   Downloaded float-cmp v0.6.0
[INFO] [stderr]   Downloaded strum v0.16.0
[INFO] [stderr]   Downloaded statrs v0.11.0
[INFO] [stderr]   Downloaded strum_macros v0.16.0
[INFO] [stderr]   Downloaded snafu-derive v0.5.0
[INFO] [stderr]   Downloaded snafu v0.5.0
[INFO] [stderr]   Downloaded bio v0.30.0
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded ndarray v0.13.0
[INFO] [stderr]   Downloaded bytecount v0.6.0
[INFO] [stderr]   Downloaded derive-new v0.5.8
[INFO] [stderr]   Downloaded bio-types v0.6.0
[INFO] [stderr]   Downloaded csv v1.1.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3e793bdf10248eb2ddbd6b0faebed8155c11b4589982e2893733958d93e8d540" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 21f4db3b2fec563926a3ebfbc46f871826f145a242fa6b5ccc805dc12ca851c5
[INFO] running `Command { std: "docker" "start" "21f4db3b2fec563926a3ebfbc46f871826f145a242fa6b5ccc805dc12ca851c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "21f4db3b2fec563926a3ebfbc46f871826f145a242fa6b5ccc805dc12ca851c5" "/opt/rustwide/cargo-home/bin/cargo" "+029c9e18dd1f4668e1d42bb187c1c263dfe20093" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "21f4db3b2fec563926a3ebfbc46f871826f145a242fa6b5ccc805dc12ca851c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "21f4db3b2fec563926a3ebfbc46f871826f145a242fa6b5ccc805dc12ca851c5" "/opt/rustwide/cargo-home/bin/cargo" "+029c9e18dd1f4668e1d42bb187c1c263dfe20093" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling serde v1.0.105
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.4
[INFO] [stderr]    Compiling backtrace-sys v0.1.35
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.2
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling num-bigint v0.2.6
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking aho-corasick v0.7.10
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling num-iter v0.1.40
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling proc-macro-hack v0.5.15
[INFO] [stderr]    Compiling rayon-core v1.7.0
[INFO] [stderr]    Compiling standback v0.2.2
[INFO] [stderr]     Checking rustc-demangle v0.1.16
[INFO] [stderr]     Checking regex-syntax v0.6.17
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking rand v0.6.5
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]     Checking itoa v0.4.5
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking backtrace v0.3.46
[INFO] [stderr]     Checking crossbeam-queue v0.2.1
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking strum v0.16.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking float-cmp v0.6.0
[INFO] [stderr]     Checking statrs v0.11.0
[INFO] [stderr]     Checking rayon v1.3.0
[INFO] [stderr]     Checking regex v1.3.6
[INFO] [stderr]     Checking num v0.2.1
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.105
[INFO] [stderr]    Compiling time-macros-impl v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]     Checking time-macros v0.1.0
[INFO] [stderr]    Compiling time v0.2.9
[INFO] [stderr]     Checking bstr v0.2.12
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking genomic_distance v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.76s
[INFO] running `Command { std: "docker" "inspect" "21f4db3b2fec563926a3ebfbc46f871826f145a242fa6b5ccc805dc12ca851c5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "21f4db3b2fec563926a3ebfbc46f871826f145a242fa6b5ccc805dc12ca851c5", kill_on_drop: false }`
[INFO] [stdout] 21f4db3b2fec563926a3ebfbc46f871826f145a242fa6b5ccc805dc12ca851c5