[INFO] cloning repository https://github.com/tomdstanton/pyggcat
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tomdstanton/pyggcat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftomdstanton%2Fpyggcat", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftomdstanton%2Fpyggcat'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 59c5a2a13afd6a60a2b53345457bab4127faba65
[INFO] checking tomdstanton/pyggcat against master#89a99936d9e76a50e8df622e7242190841fd871b for pr-156160
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftomdstanton%2Fpyggcat" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/tomdstanton/pyggcat
[INFO] finished tweaking git repo https://github.com/tomdstanton/pyggcat
[INFO] tweaked toml for git repo https://github.com/tomdstanton/pyggcat written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/tomdstanton/pyggcat on toolchain 89a99936d9e76a50e8df622e7242190841fd871b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+89a99936d9e76a50e8df622e7242190841fd871b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/tomdstanton/pyggcat already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+89a99936d9e76a50e8df622e7242190841fd871b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/algbio/ggcat.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/dynamic-dispatch-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/instrumenter-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/mt-debug-counters-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/nightly-quirks-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/papi-bindings-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/parallel-processor-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/Guilucand/streaming-libdeflate-rs.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded replace_with v0.1.8
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[INFO] [stderr]   Downloaded bio-types v1.0.4
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[INFO] [stderr]   Downloaded genome-graph v11.0.0
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[INFO] [stderr]   Downloaded parallel-processor v0.2.3
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] b3f84334c254442fa682d54fbb713ee7aca8f2476229c2ab978adfa0f96b4ba4
[INFO] running `Command { std: "docker" "start" "b3f84334c254442fa682d54fbb713ee7aca8f2476229c2ab978adfa0f96b4ba4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b3f84334c254442fa682d54fbb713ee7aca8f2476229c2ab978adfa0f96b4ba4" "/opt/rustwide/cargo-home/bin/cargo" "+89a99936d9e76a50e8df622e7242190841fd871b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b3f84334c254442fa682d54fbb713ee7aca8f2476229c2ab978adfa0f96b4ba4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b3f84334c254442fa682d54fbb713ee7aca8f2476229c2ab978adfa0f96b4ba4" "/opt/rustwide/cargo-home/bin/cargo" "+89a99936d9e76a50e8df622e7242190841fd871b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking parking_lot_core v0.9.12
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[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling lz4-sys v1.11.1+lz4-1.10.0
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[INFO] [stderr]    Compiling object v0.37.3
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[INFO] [stderr]    Compiling newtype_derive v0.1.6
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[INFO] [stderr]    Compiling ref-cast v1.0.25
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[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling ref-cast-impl v1.0.25
[INFO] [stderr]    Compiling instrumenter-proc-macro v0.1.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling num-conv v0.2.1
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[INFO] [stderr]    Compiling time-macros v0.2.27
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[INFO] [stderr]     Checking ordered-float v5.3.0
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[INFO] [stderr]     Checking triple_accel v0.4.0
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[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]    Compiling clap_derive v4.6.1
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[INFO] [stderr]    Compiling dynamic-dispatch-proc-macro v0.5.0
[INFO] [stderr]     Checking disjoint-sets v0.4.2
[INFO] [stderr]     Checking vec_map v0.8.2
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[INFO] [stderr]     Checking ggcat-logging v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
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[INFO] [stderr]    Compiling pyo3-macros-backend v0.28.3
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[INFO] [stderr]     Checking ggcat_utils v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_config v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_hashes v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_io v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
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[INFO] [stderr]     Checking ggcat_colors v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_minimizer_bucketing v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_kmers_transform v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_assembler_minibuck v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_assembler_kmerge v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_querier v0.1.1 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_dumper v0.1.1 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking genome-graph v11.0.0
[INFO] [stderr]     Checking matchtigs v2.1.9
[INFO] [stderr]     Checking ggcat_assembler_pipeline v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat_assembler v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking ggcat-api v2.0.0 (https://github.com/algbio/ggcat.git?branch=main#2ab1d643)
[INFO] [stderr]     Checking pyggcat v0.0.1-alpha (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 11s
[INFO] running `Command { std: "docker" "inspect" "b3f84334c254442fa682d54fbb713ee7aca8f2476229c2ab978adfa0f96b4ba4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b3f84334c254442fa682d54fbb713ee7aca8f2476229c2ab978adfa0f96b4ba4", kill_on_drop: false }`
[INFO] [stdout] b3f84334c254442fa682d54fbb713ee7aca8f2476229c2ab978adfa0f96b4ba4