[INFO] cloning repository https://github.com/p-sud/gembs-to-bismark-bed-converter
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/p-sud/gembs-to-bismark-bed-converter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 253b463673014677fc8ef6392643d036966fab89
[INFO] checking p-sud/gembs-to-bismark-bed-converter against master#89a99936d9e76a50e8df622e7242190841fd871b for pr-156160-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fp-sud%2Fgembs-to-bismark-bed-converter" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
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[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/p-sud/gembs-to-bismark-bed-converter
[INFO] finished tweaking git repo https://github.com/p-sud/gembs-to-bismark-bed-converter
[INFO] tweaked toml for git repo https://github.com/p-sud/gembs-to-bismark-bed-converter written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/p-sud/gembs-to-bismark-bed-converter on toolchain 89a99936d9e76a50e8df622e7242190841fd871b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+89a99936d9e76a50e8df622e7242190841fd871b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/p-sud/gembs-to-bismark-bed-converter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+89a99936d9e76a50e8df622e7242190841fd871b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:fd22e2154e7db748230f413534f3a6d034160c9d2b7c14b90fba4e9bfc1a36d4" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] f6b74207e267441e81e62e1454de4772818037488bd21f1c168528d261bfd510
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[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f6b74207e267441e81e62e1454de4772818037488bd21f1c168528d261bfd510" "/opt/rustwide/cargo-home/bin/cargo" "+89a99936d9e76a50e8df622e7242190841fd871b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.13
[INFO] [stderr]    Compiling libc v0.2.66
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling byteorder v1.3.2
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling ryu v1.0.2
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[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking itoa v0.4.4
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking regex-automata v0.1.8
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling quote v1.0.2
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[INFO] [stderr]     Checking csv-core v0.1.6
[INFO] [stderr]    Compiling syn-mid v0.4.0
[INFO] [stderr]    Compiling rustversion v1.0.1
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling proc-macro-error v0.4.4
[INFO] [stderr]    Compiling proc-macro-error-attr v0.4.3
[INFO] [stderr]    Compiling structopt-derive v0.4.0
[INFO] [stderr]     Checking structopt v0.3.7
[INFO] [stderr]     Checking bstr v0.2.8
[INFO] [stderr]     Checking csv v1.1.2
[INFO] [stderr]     Checking gembs-to-bismark-bed-converter v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/main.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | #[derive(Debug, Deserialize, Serialize)]
[INFO] [stdout]    |                 ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Deserialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/main.rs:15:30
[INFO] [stdout]    |
[INFO] [stdout] 15 | #[derive(Debug, Deserialize, Serialize)]
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Serialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/main.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | #[derive(Debug, Deserialize, Serialize)]
[INFO] [stdout]    |                 ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Deserialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/main.rs:15:30
[INFO] [stdout]    |
[INFO] [stdout] 15 | #[derive(Debug, Deserialize, Serialize)]
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Serialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `reference_call`, `genotype_call`, `flags`, `methylation_estimate`, `total_bases_supporting_call`, and `total_bases` are never read
[INFO] [stdout]   --> src/main.rs:24:5
[INFO] [stdout]    |
[INFO] [stdout] 16 | struct Row {
[INFO] [stdout]    |        --- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 24 |     reference_call: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 25 |     #[serde(skip)]
[INFO] [stdout] 26 |     genotype_call: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 27 |     #[serde(skip)]
[INFO] [stdout] 28 |     flags: String,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 29 |     #[serde(skip)]
[INFO] [stdout] 30 |     methylation_estimate: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 35 |     total_bases_supporting_call: u16,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 39 |     total_bases: u16,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Row` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/main.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | #[derive(Debug, Deserialize, Serialize)]
[INFO] [stdout]    |                 ^----------
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Deserialize` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_IMPL_DESERIALIZE_FOR_Row`
[INFO] [stdout] 16 | struct Row {
[INFO] [stdout]    |        --- `Row` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Deserialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/main.rs:15:30
[INFO] [stdout]    |
[INFO] [stdout] 15 | #[derive(Debug, Deserialize, Serialize)]
[INFO] [stdout]    |                              ^--------
[INFO] [stdout]    |                              |
[INFO] [stdout]    |                              `Serialize` is not local
[INFO] [stdout]    |                              move the `impl` block outside of this constant `_IMPL_SERIALIZE_FOR_Row`
[INFO] [stdout] 16 | struct Row {
[INFO] [stdout]    |        --- `Row` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Serialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `reference_call`, `genotype_call`, `flags`, `methylation_estimate`, `total_bases_supporting_call`, and `total_bases` are never read
[INFO] [stdout]   --> src/main.rs:24:5
[INFO] [stdout]    |
[INFO] [stdout] 16 | struct Row {
[INFO] [stdout]    |        --- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 24 |     reference_call: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 25 |     #[serde(skip)]
[INFO] [stdout] 26 |     genotype_call: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 27 |     #[serde(skip)]
[INFO] [stdout] 28 |     flags: String,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 29 |     #[serde(skip)]
[INFO] [stdout] 30 |     methylation_estimate: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 35 |     total_bases_supporting_call: u16,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 39 |     total_bases: u16,
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Row` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/main.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | #[derive(Debug, Deserialize, Serialize)]
[INFO] [stdout]    |                 ^----------
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Deserialize` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_IMPL_DESERIALIZE_FOR_Row`
[INFO] [stdout] 16 | struct Row {
[INFO] [stdout]    |        --- `Row` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Deserialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/main.rs:15:30
[INFO] [stdout]    |
[INFO] [stdout] 15 | #[derive(Debug, Deserialize, Serialize)]
[INFO] [stdout]    |                              ^--------
[INFO] [stdout]    |                              |
[INFO] [stdout]    |                              `Serialize` is not local
[INFO] [stdout]    |                              move the `impl` block outside of this constant `_IMPL_SERIALIZE_FOR_Row`
[INFO] [stdout] 16 | struct Row {
[INFO] [stdout]    |        --- `Row` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Serialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 8.77s
[INFO] running `Command { std: "docker" "inspect" "f6b74207e267441e81e62e1454de4772818037488bd21f1c168528d261bfd510", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f6b74207e267441e81e62e1454de4772818037488bd21f1c168528d261bfd510", kill_on_drop: false }`
[INFO] [stdout] f6b74207e267441e81e62e1454de4772818037488bd21f1c168528d261bfd510
