[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9cb4d8c1296395af550005a385efd7d521aa15f3
[INFO] checking informationsea/sequencetoolkit against master#818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc for pr-156114-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded find-msvc-tools v0.1.8
[INFO] [stderr]   Downloaded which v4.4.2
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.108
[INFO] [stderr]   Downloaded cc v1.2.54
[INFO] [stderr]   Downloaded xlsxwriter v0.6.1
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.108
[INFO] [stderr]   Downloaded clap_lex v0.7.7
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded temp-file v0.1.9
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded vcf v0.6.1
[INFO] [stderr]   Downloaded bytecount v0.6.9
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.108
[INFO] [stderr]   Downloaded quote v1.0.44
[INFO] [stderr]   Downloaded zmij v1.0.17
[INFO] [stderr]   Downloaded autocompress v0.6.0
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.108
[INFO] [stderr]   Downloaded js-sys v0.3.85
[INFO] [stderr]   Downloaded humantime v2.3.0
[INFO] [stderr]   Downloaded clap v4.5.55
[INFO] [stderr]   Downloaded flate2 v1.1.8
[INFO] [stderr]   Downloaded itertools v0.9.0
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.35
[INFO] [stderr]   Downloaded nom v5.1.3
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded clap_builder v4.5.55
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded chrono v0.4.43
[INFO] [stderr]   Downloaded zerocopy v0.8.35
[INFO] [stderr]   Downloaded lexical-core v0.7.6
[INFO] [stderr]   Downloaded tokio v1.49.0
[INFO] [stderr]   Downloaded libz-sys v1.1.23
[INFO] [stderr]   Downloaded curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.7
[INFO] [stderr]   Downloaded openssl-src v300.5.5+3.5.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fe5b899a0a28d30a4772a61d0d615642a38dc0ca94a9234c6965da7da6fd8f28
[INFO] running `Command { std: "docker" "start" "-a" "fe5b899a0a28d30a4772a61d0d615642a38dc0ca94a9234c6965da7da6fd8f28", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fe5b899a0a28d30a4772a61d0d615642a38dc0ca94a9234c6965da7da6fd8f28", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fe5b899a0a28d30a4772a61d0d615642a38dc0ca94a9234c6965da7da6fd8f28", kill_on_drop: false }`
[INFO] [stdout] fe5b899a0a28d30a4772a61d0d615642a38dc0ca94a9234c6965da7da6fd8f28
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b2a0d6eb68eb7ace856b6faf9de41462152af78cc1614d6f9cfc659f077e97bb
[INFO] running `Command { std: "docker" "start" "-a" "b2a0d6eb68eb7ace856b6faf9de41462152af78cc1614d6f9cfc659f077e97bb", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling find-msvc-tools v0.1.8
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling zerocopy v0.8.35
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking simd-adler32 v0.3.8
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking anstyle-query v1.1.5
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking clap_lex v0.7.7
[INFO] [stderr]     Checking tokio v1.49.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking flate2 v1.1.8
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking clap_builder v4.5.55
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]     Checking indexmap v2.13.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling cc v1.2.54
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking itertools v0.12.1
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling openssl-src v300.5.5+3.5.5
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling linux-raw-sys v0.4.15
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]    Compiling home v0.5.12
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr] error: could not compile `simba` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc/bin/rustc --crate-name simba --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/simba-0.6.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="std"' --cfg 'feature="wide"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("cordic", "decimal", "default", "fixed", "libm", "libm_force", "packed_simd", "partial_fixed_point_support", "rand", "serde", "serde_serialize", "std", "wide"))' -C metadata=cdfef4c1ca752a1a -C extra-filename=-b8d5cc532d45060a --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-89900dc5263cac80.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-f1021b2aa5f750f9.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-227c993090963b4d.rmeta --extern paste=/opt/rustwide/target/debug/deps/libpaste-c9191a41cf78ae7e.so --extern wide=/opt/rustwide/target/debug/deps/libwide-083816730bf13ed5.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.114/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=c2a7d23af989fca0 -C extra-filename=-71443eeb12106779 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-bc33634ba91eea12.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-ca0a370f885b1094.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-a0775ff901404d1b.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "b2a0d6eb68eb7ace856b6faf9de41462152af78cc1614d6f9cfc659f077e97bb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b2a0d6eb68eb7ace856b6faf9de41462152af78cc1614d6f9cfc659f077e97bb", kill_on_drop: false }`
[INFO] [stdout] b2a0d6eb68eb7ace856b6faf9de41462152af78cc1614d6f9cfc659f077e97bb