[INFO] cloning repository https://github.com/huiN95/barcode_demux
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/huiN95/barcode_demux" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhuiN95%2Fbarcode_demux", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhuiN95%2Fbarcode_demux'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ebc2cc985531610ce84a7658f88a203b3a87a319
[INFO] checking huiN95/barcode_demux against master#818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc for pr-156114-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FhuiN95%2Fbarcode_demux" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/huiN95/barcode_demux
[INFO] finished tweaking git repo https://github.com/huiN95/barcode_demux
[INFO] tweaked toml for git repo https://github.com/huiN95/barcode_demux written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/huiN95/barcode_demux on toolchain 818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/huiN95/barcode_demux already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded toml v0.9.12+spec-1.1.0
[INFO] [stderr]   Downloaded scoped_threadpool v0.1.9
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded seq_io v0.3.4
[INFO] [stderr]   Downloaded sketches-ddsketch v0.3.0
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded unicode-xid v0.1.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rand_xoshiro v0.7.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded console v0.16.2
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded env_logger v0.11.9
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded quote v0.6.13
[INFO] [stderr]   Downloaded bytecount v0.6.9
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded metrics-exporter-prometheus v0.18.1
[INFO] [stderr]   Downloaded metrics-util v0.20.1
[INFO] [stderr]   Downloaded quanta v0.12.6
[INFO] [stderr]   Downloaded metrics v0.24.3
[INFO] [stderr]   Downloaded proc-macro2 v0.4.30
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded raw-cpuid v11.6.0
[INFO] [stderr]   Downloaded jiff-static v0.2.21
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded syn v0.15.44
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded ndarray v0.17.2
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded web-sys v0.3.90
[INFO] [stderr]   Downloaded jiff v0.2.21
[INFO] [stderr]   Downloaded libz-sys v1.1.24
[INFO] [stderr]   Downloaded curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.5+3.5.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5acbd96d3a151d6ee357e08fb27f69df14cc1843a4b1ccbee19c47a583a6f4af
[INFO] running `Command { std: "docker" "start" "-a" "5acbd96d3a151d6ee357e08fb27f69df14cc1843a4b1ccbee19c47a583a6f4af", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5acbd96d3a151d6ee357e08fb27f69df14cc1843a4b1ccbee19c47a583a6f4af", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5acbd96d3a151d6ee357e08fb27f69df14cc1843a4b1ccbee19c47a583a6f4af", kill_on_drop: false }`
[INFO] [stdout] 5acbd96d3a151d6ee357e08fb27f69df14cc1843a4b1ccbee19c47a583a6f4af
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+818811b3cd1e0ff0d8ef20d5a4cf0b7c079929bc" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 882b01aa6d3d481b07c223c0e104cab7953fe9059a1c3c233aa237e79dd116c1
[INFO] running `Command { std: "docker" "start" "-a" "882b01aa6d3d481b07c223c0e104cab7953fe9059a1c3c233aa237e79dd116c1", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling libc v0.2.182
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]     Checking tracing-core v0.1.36
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Checking mio v1.1.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking hashbrown v0.16.1
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]    Compiling aws-lc-rs v1.16.0
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]     Checking http v1.4.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling rustls v0.23.37
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking futures-channel v0.3.32
[INFO] [stderr]     Checking futures-task v0.3.32
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking http-body v1.0.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking tokio v1.49.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking linux-raw-sys v0.12.1
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]     Checking futures-util v0.3.32
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking indexmap v2.13.0
[INFO] [stderr]     Checking num_threads v0.1.7
[INFO] [stderr]     Checking num-conv v0.2.0
[INFO] [stderr]    Compiling cc v1.2.56
[INFO] [stderr]     Checking time v0.3.47
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking chrono v0.4.44
[INFO] [stderr]     Checking metrics v0.24.3
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking rand_xoshiro v0.7.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking sketches-ddsketch v0.3.0
[INFO] [stderr]     Checking simd-adler32 v0.3.8
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling openssl-src v300.5.5+3.5.5
[INFO] [stderr]     Checking quanta v0.12.6
[INFO] [stderr]     Checking unicode-width v0.2.2
[INFO] [stderr]    Compiling metrics-exporter-prometheus v0.18.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking winnow v0.7.14
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking metrics-util v0.20.1
[INFO] [stderr]     Checking clap_builder v4.5.60
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking console v0.16.2
[INFO] [stderr]     Checking xattr v1.6.1
[INFO] [stderr]    Compiling aws-lc-sys v0.37.1
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling libz-sys v1.1.24
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking serde_spanned v1.0.4
[INFO] [stderr]     Checking toml_datetime v0.7.5+spec-1.1.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]     Checking matchers v0.2.0
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking toml_parser v1.0.9+spec-1.1.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking env_filter v1.0.0
[INFO] [stderr]     Checking http-body-util v0.1.3
[INFO] [stderr]     Checking crossbeam-queue v0.3.12
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking ipnet v2.11.0
[INFO] [stderr]     Checking jiff v0.2.21
[INFO] [stderr]     Checking unit-prefix v0.5.2
[INFO] [stderr]     Checking base64 v0.22.1
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking tokio-util v0.7.18
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking toml_writer v1.0.6+spec-1.1.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking scoped_threadpool v0.1.9
[INFO] [stderr]     Checking tempfile v3.26.0
[INFO] [stderr]     Checking indicatif v0.18.4
[INFO] [stderr]     Checking toml v0.9.12+spec-1.1.0
[INFO] [stderr]     Checking tar v0.4.44
[INFO] [stderr]     Checking crossbeam v0.8.4
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking h2 v0.4.13
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking env_logger v0.11.9
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking clap v4.5.60
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking tracing-serde v0.2.0
[INFO] [stderr]     Checking tracing-subscriber v0.3.22
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking seq_io v0.3.4
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking hyper v1.8.1
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking tracing-appender v0.2.4
[INFO] [stderr]     Checking hyper-util v0.1.20
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking rustls-webpki v0.103.9
[INFO] [stderr]     Checking tokio-rustls v0.26.4
[INFO] [stderr]     Checking hyper-rustls v0.27.7
[INFO] [stderr]     Checking rust-htslib v0.46.0
[INFO] [stderr]     Checking barcode_demux v1.0.7 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]  --> src/barcode_demuxer_v1.rs:8:30
[INFO] [stdout]   |
[INFO] [stdout] 8 | use metrics::{self, counter, histogram};
[INFO] [stdout]   |                              ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v1.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:27:30
[INFO] [stdout]    |
[INFO] [stdout] 27 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:28:30
[INFO] [stdout]    |
[INFO] [stdout] 28 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Direction` and `get_myers_from_barcodes`
[INFO] [stdout]  --> src/demux_pipeline_v4.rs:3:29
[INFO] [stdout]   |
[INFO] [stdout] 3 | use crate::barcode_mysers::{Direction, get_myers_from_barcodes};
[INFO] [stdout]   |                             ^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::core_context::BarcodeCandidate`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use crate::core_context::BarcodeCandidate;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::sync::Arc`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use std::sync::Arc;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `MayersPattern` and `barcode_alignment`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:24:29
[INFO] [stdout]    |
[INFO] [stdout] 24 | use crate::barcode_mysers::{MayersPattern, barcode_alignment};
[INFO] [stdout]    |                             ^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:27:30
[INFO] [stdout]    |
[INFO] [stdout] 27 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:34:5
[INFO] [stdout]    |
[INFO] [stdout] 34 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]  --> src/get_demuxed_reads.rs:6:24
[INFO] [stdout]   |
[INFO] [stdout] 6 | use metrics::{counter, histogram};
[INFO] [stdout]   |                        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `BufRead`
[INFO] [stdout]   --> src/io_utils.rs:13:21
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::io::{self, BufRead, BufReader};
[INFO] [stdout]    |                     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `BufWriter`
[INFO] [stdout]   --> src/io_utils.rs:14:15
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::io::{BufWriter, Write};
[INFO] [stdout]    |               ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `serde::Serialize`
[INFO] [stdout]   --> src/io_utils.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use serde::Serialize;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::demux_pipeline_v2::demux_pipeline_v2`
[INFO] [stdout]   --> src/main.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use crate::demux_pipeline_v2::demux_pipeline_v2;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]  --> src/barcode_demuxer_v1.rs:8:30
[INFO] [stdout]   |
[INFO] [stdout] 8 | use metrics::{self, counter, histogram};
[INFO] [stdout]   |                              ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v1.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:27:30
[INFO] [stdout]    |
[INFO] [stdout] 27 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:20:5
[INFO] [stdout]    |
[INFO] [stdout] 20 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:27:5
[INFO] [stdout]    |
[INFO] [stdout] 27 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v3.rs:28:30
[INFO] [stdout]    |
[INFO] [stdout] 28 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Direction` and `get_myers_from_barcodes`
[INFO] [stdout]  --> src/demux_pipeline_v4.rs:3:29
[INFO] [stdout]   |
[INFO] [stdout] 3 | use crate::barcode_mysers::{Direction, get_myers_from_barcodes};
[INFO] [stdout]   |                             ^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::core_context::BarcodeCandidate`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use crate::core_context::BarcodeCandidate;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::thread`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use std::thread;
[INFO] [stdout]    |     ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::sync::Arc`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use std::sync::Arc;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `MayersPattern` and `barcode_alignment`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:24:29
[INFO] [stdout]    |
[INFO] [stdout] 24 | use crate::barcode_mysers::{MayersPattern, barcode_alignment};
[INFO] [stdout]    |                             ^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `bio::alignment::distance`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:26:5
[INFO] [stdout]    |
[INFO] [stdout] 26 | use bio::alignment::distance;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:27:30
[INFO] [stdout]    |
[INFO] [stdout] 27 | use metrics::{self, counter, histogram};
[INFO] [stdout]    |                              ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/demux_pipeline_v4.rs:34:5
[INFO] [stdout]    |
[INFO] [stdout] 34 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `histogram`
[INFO] [stdout]  --> src/get_demuxed_reads.rs:6:24
[INFO] [stdout]   |
[INFO] [stdout] 6 | use metrics::{counter, histogram};
[INFO] [stdout]   |                        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `BufRead`
[INFO] [stdout]   --> src/io_utils.rs:13:21
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::io::{self, BufRead, BufReader};
[INFO] [stdout]    |                     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `BufWriter`
[INFO] [stdout]   --> src/io_utils.rs:14:15
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::io::{BufWriter, Write};
[INFO] [stdout]    |               ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `serde::Serialize`
[INFO] [stdout]   --> src/io_utils.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use serde::Serialize;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::demux_pipeline_v2::demux_pipeline_v2`
[INFO] [stdout]   --> src/main.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use crate::demux_pipeline_v2::demux_pipeline_v2;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]   --> src/io_utils.rs:14:26
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::io::{BufWriter, Write};
[INFO] [stdout]    |                          ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `max_distance`
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:133:5
[INFO] [stdout]     |
[INFO] [stdout] 133 |     max_distance: u8,
[INFO] [stdout]     |     ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_distance`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]   --> src/io_utils.rs:14:26
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::io::{BufWriter, Write};
[INFO] [stdout]    |                          ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `primer_id`
[INFO] [stdout]   --> src/get_demuxed_reads.rs:43:28
[INFO] [stdout]    |
[INFO] [stdout] 43 | fn make_name(rec_id: &str, primer_id: &str, s: usize, e: usize) -> String {
[INFO] [stdout]    |                            ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_primer_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `nn` is never read
[INFO] [stdout]   --> src/bam_record_extention.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout]  5 | pub struct ReadRecord {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub nn: Option<Vec<u8>>,
[INFO] [stdout]    |         ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ReadRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `u32` is never used
[INFO] [stdout]   --> src/bam_record_extention.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 45 | pub trait AuxExt<'a> {
[INFO] [stdout]    |           ------ method in this trait
[INFO] [stdout] 46 |     fn i32(&self, tag: &[u8]) -> Option<i32>; // ch:i, cx:i …
[INFO] [stdout] 47 |     fn u32(&self, tag: &[u8]) -> Option<u32>; // np:i, cx:i …
[INFO] [stdout]    |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `pattern` is never read
[INFO] [stdout]   --> src/barcode_mysers.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 |     MyersLong {
[INFO] [stdout]    |     --------- field in this variant
[INFO] [stdout] 16 |         myers: MyersLong<u8>,
[INFO] [stdout] 17 |         pattern: String,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `pattern` is never used
[INFO] [stdout]   --> src/barcode_mysers.rs:23:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl MayersPattern {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] 22 |     #[inline]
[INFO] [stdout] 23 |     pub fn pattern(&self) -> &str {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compl_iupac` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:130:4
[INFO] [stdout]     |
[INFO] [stdout] 130 | fn compl_iupac(b: u8) -> u8 {
[INFO] [stdout]     |    ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `revcomp_iupac` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:151:4
[INFO] [stdout]     |
[INFO] [stdout] 151 | fn revcomp_iupac(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_two_directions_myers_from_barcodes` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:221:8
[INFO] [stdout]     |
[INFO] [stdout] 221 | pub fn get_two_directions_myers_from_barcodes(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `distance` is never read
[INFO] [stdout]   --> src/core_context.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub struct BarcodePair {
[INFO] [stdout]    |            ----------- field in this struct
[INFO] [stdout] 16 |     pub name: Arc<str>,
[INFO] [stdout] 17 |     pub distance: (i32, i32),
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `BarcodePair` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `demux_pipeline_v2` is never used
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:36:8
[INFO] [stdout]    |
[INFO] [stdout] 36 | pub fn demux_pipeline_v2(cli: &Cli) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `demux_reads_by_multiple_barcode` is never used
[INFO] [stdout]    --> src/demux_pipeline_v2.rs:130:8
[INFO] [stdout]     |
[INFO] [stdout] 130 | pub fn demux_reads_by_multiple_barcode(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `multiple_barcode_demuxer_v1` is never used
[INFO] [stdout]    --> src/demux_pipeline_v2.rs:179:8
[INFO] [stdout]     |
[INFO] [stdout] 179 | pub fn multiple_barcode_demuxer_v1(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:224:9
[INFO] [stdout]     |
[INFO] [stdout] 223 | pub struct LocalAlignmentResult {
[INFO] [stdout]     |            -------------------- fields in this struct
[INFO] [stdout] 224 |     pub a_range: (usize, usize), // 左闭右开
[INFO] [stdout]     |         ^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 227 |     pub a_substring: String,
[INFO] [stdout]     |         ^^^^^^^^^^^
[INFO] [stdout] 228 |     pub b_substring: String,
[INFO] [stdout]     |         ^^^^^^^^^^^
[INFO] [stdout] 229 |
[INFO] [stdout] 230 |     pub aligned_a: String,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 231 |     pub aligned_b: String,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 232 |
[INFO] [stdout] 233 |     pub alignment_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 234 |     pub matches: usize,
[INFO] [stdout]     |         ^^^^^^^
[INFO] [stdout] 235 |     pub mismatches: usize,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 236 |     pub gaps_in_a: usize,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 237 |     pub gaps_in_b: usize,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 240 |     pub identity: f64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 241 |     pub score: f64,
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `LocalAlignmentResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `longest_similar_local_alignment_str` is never used
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:606:8
[INFO] [stdout]     |
[INFO] [stdout] 606 | pub fn longest_similar_local_alignment_str(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `channel_q_from_fastq_ascii` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:427:8
[INFO] [stdout]     |
[INFO] [stdout] 427 | pub fn channel_q_from_fastq_ascii(q_ascii: &[u8]) -> Result<f32> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_demuxed_mixed_reads` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:461:4
[INFO] [stdout]     |
[INFO] [stdout] 461 | fn get_demuxed_mixed_reads(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `write_prepared_record` and `finish` are never used
[INFO] [stdout]    --> src/io_utils.rs:136:8
[INFO] [stdout]     |
[INFO] [stdout] 135 | pub trait ReadWriter {
[INFO] [stdout]     |           ---------- methods in this trait
[INFO] [stdout] 136 |     fn write_prepared_record(&mut self, record: &[RecordType]) -> io::Result<()>;
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 141 |     fn finish(&mut self) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_complement` is never used
[INFO] [stdout]    --> src/io_utils.rs:426:4
[INFO] [stdout]     |
[INFO] [stdout] 426 | fn reverse_complement(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `complement` is never used
[INFO] [stdout]    --> src/io_utils.rs:465:4
[INFO] [stdout]     |
[INFO] [stdout] 465 | fn complement(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_bar_pb` is never used
[INFO] [stdout]  --> src/pbar.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn get_bar_pb(message: String, interval: Duration, total: u64) -> ProgressBar {
[INFO] [stdout]   |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `phred_to_fastq_ascii` is never used
[INFO] [stdout]    --> src/reader_worker.rs:210:4
[INFO] [stdout]     |
[INFO] [stdout] 210 | fn phred_to_fastq_ascii(qual: &[u8]) -> Result<Vec<u8>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `RG` should have a snake case name
[INFO] [stdout]   --> src/bam_record_extention.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub RG: Option<String>,
[INFO] [stdout]    |         ^^ help: convert the identifier to snake case: `rg`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `max_distance`
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:133:5
[INFO] [stdout]     |
[INFO] [stdout] 133 |     max_distance: u8,
[INFO] [stdout]     |     ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_max_distance`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `primer_id`
[INFO] [stdout]   --> src/get_demuxed_reads.rs:43:28
[INFO] [stdout]    |
[INFO] [stdout] 43 | fn make_name(rec_id: &str, primer_id: &str, s: usize, e: usize) -> String {
[INFO] [stdout]    |                            ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_primer_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `nn` is never read
[INFO] [stdout]   --> src/bam_record_extention.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout]  5 | pub struct ReadRecord {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 20 |     pub nn: Option<Vec<u8>>,
[INFO] [stdout]    |         ^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ReadRecord` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `u32` is never used
[INFO] [stdout]   --> src/bam_record_extention.rs:47:8
[INFO] [stdout]    |
[INFO] [stdout] 45 | pub trait AuxExt<'a> {
[INFO] [stdout]    |           ------ method in this trait
[INFO] [stdout] 46 |     fn i32(&self, tag: &[u8]) -> Option<i32>; // ch:i, cx:i …
[INFO] [stdout] 47 |     fn u32(&self, tag: &[u8]) -> Option<u32>; // np:i, cx:i …
[INFO] [stdout]    |        ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `pattern` is never read
[INFO] [stdout]   --> src/barcode_mysers.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 |     MyersLong {
[INFO] [stdout]    |     --------- field in this variant
[INFO] [stdout] 16 |         myers: MyersLong<u8>,
[INFO] [stdout] 17 |         pattern: String,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `pattern` is never used
[INFO] [stdout]   --> src/barcode_mysers.rs:23:12
[INFO] [stdout]    |
[INFO] [stdout] 21 | impl MayersPattern {
[INFO] [stdout]    | ------------------ method in this implementation
[INFO] [stdout] 22 |     #[inline]
[INFO] [stdout] 23 |     pub fn pattern(&self) -> &str {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `compl_iupac` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:130:4
[INFO] [stdout]     |
[INFO] [stdout] 130 | fn compl_iupac(b: u8) -> u8 {
[INFO] [stdout]     |    ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `revcomp_iupac` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:151:4
[INFO] [stdout]     |
[INFO] [stdout] 151 | fn revcomp_iupac(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_two_directions_myers_from_barcodes` is never used
[INFO] [stdout]    --> src/barcode_mysers.rs:221:8
[INFO] [stdout]     |
[INFO] [stdout] 221 | pub fn get_two_directions_myers_from_barcodes(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `distance` is never read
[INFO] [stdout]   --> src/core_context.rs:17:9
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub struct BarcodePair {
[INFO] [stdout]    |            ----------- field in this struct
[INFO] [stdout] 16 |     pub name: Arc<str>,
[INFO] [stdout] 17 |     pub distance: (i32, i32),
[INFO] [stdout]    |         ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `BarcodePair` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `demux_pipeline_v2` is never used
[INFO] [stdout]   --> src/demux_pipeline_v2.rs:36:8
[INFO] [stdout]    |
[INFO] [stdout] 36 | pub fn demux_pipeline_v2(cli: &Cli) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `demux_reads_by_multiple_barcode` is never used
[INFO] [stdout]    --> src/demux_pipeline_v2.rs:130:8
[INFO] [stdout]     |
[INFO] [stdout] 130 | pub fn demux_reads_by_multiple_barcode(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `multiple_barcode_demuxer_v1` is never used
[INFO] [stdout]    --> src/demux_pipeline_v2.rs:179:8
[INFO] [stdout]     |
[INFO] [stdout] 179 | pub fn multiple_barcode_demuxer_v1(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/demux_pipeline_v4.rs:224:9
[INFO] [stdout]     |
[INFO] [stdout] 223 | pub struct LocalAlignmentResult {
[INFO] [stdout]     |            -------------------- fields in this struct
[INFO] [stdout] 224 |     pub a_range: (usize, usize), // 左闭右开
[INFO] [stdout]     |         ^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 227 |     pub a_substring: String,
[INFO] [stdout]     |         ^^^^^^^^^^^
[INFO] [stdout] 228 |     pub b_substring: String,
[INFO] [stdout]     |         ^^^^^^^^^^^
[INFO] [stdout] 229 |
[INFO] [stdout] 230 |     pub aligned_a: String,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 231 |     pub aligned_b: String,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 235 |     pub mismatches: usize,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 236 |     pub gaps_in_a: usize,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] 237 |     pub gaps_in_b: usize,
[INFO] [stdout]     |         ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 241 |     pub score: f64,
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `LocalAlignmentResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `channel_q_from_fastq_ascii` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:427:8
[INFO] [stdout]     |
[INFO] [stdout] 427 | pub fn channel_q_from_fastq_ascii(q_ascii: &[u8]) -> Result<f32> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_demuxed_mixed_reads` is never used
[INFO] [stdout]    --> src/get_demuxed_reads.rs:461:4
[INFO] [stdout]     |
[INFO] [stdout] 461 | fn get_demuxed_mixed_reads(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `write_prepared_record` and `finish` are never used
[INFO] [stdout]    --> src/io_utils.rs:136:8
[INFO] [stdout]     |
[INFO] [stdout] 135 | pub trait ReadWriter {
[INFO] [stdout]     |           ---------- methods in this trait
[INFO] [stdout] 136 |     fn write_prepared_record(&mut self, record: &[RecordType]) -> io::Result<()>;
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 141 |     fn finish(&mut self) -> io::Result<()> {
[INFO] [stdout]     |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_complement` is never used
[INFO] [stdout]    --> src/io_utils.rs:426:4
[INFO] [stdout]     |
[INFO] [stdout] 426 | fn reverse_complement(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `complement` is never used
[INFO] [stdout]    --> src/io_utils.rs:465:4
[INFO] [stdout]     |
[INFO] [stdout] 465 | fn complement(seq: &[u8]) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_bar_pb` is never used
[INFO] [stdout]  --> src/pbar.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn get_bar_pb(message: String, interval: Duration, total: u64) -> ProgressBar {
[INFO] [stdout]   |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `phred_to_fastq_ascii` is never used
[INFO] [stdout]    --> src/reader_worker.rs:210:4
[INFO] [stdout]     |
[INFO] [stdout] 210 | fn phred_to_fastq_ascii(qual: &[u8]) -> Result<Vec<u8>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `RG` should have a snake case name
[INFO] [stdout]   --> src/bam_record_extention.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 |     pub RG: Option<String>,
[INFO] [stdout]    |         ^^ help: convert the identifier to snake case: `rg`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 01s
[INFO] running `Command { std: "docker" "inspect" "882b01aa6d3d481b07c223c0e104cab7953fe9059a1c3c233aa237e79dd116c1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "882b01aa6d3d481b07c223c0e104cab7953fe9059a1c3c233aa237e79dd116c1", kill_on_drop: false }`
[INFO] [stdout] 882b01aa6d3d481b07c223c0e104cab7953fe9059a1c3c233aa237e79dd116c1