[INFO] cloning repository https://github.com/MattesMrzik/simulate_tkf
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MattesMrzik/simulate_tkf" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMattesMrzik%2Fsimulate_tkf", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMattesMrzik%2Fsimulate_tkf'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4d1a378150b95efc47be1d4915c46529dbdf15ba
[INFO] checking MattesMrzik/simulate_tkf against master#53509ca37e3b507887607c2f4a7f23bd4838f099 for pr-156027
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMattesMrzik%2Fsimulate_tkf" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/MattesMrzik/simulate_tkf
[INFO] finished tweaking git repo https://github.com/MattesMrzik/simulate_tkf
[INFO] tweaked toml for git repo https://github.com/MattesMrzik/simulate_tkf written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/MattesMrzik/simulate_tkf on toolchain 53509ca37e3b507887607c2f4a7f23bd4838f099
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/MattesMrzik/rust-phylo`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]      Locking 261 packages to latest Rust 1.98.0-nightly compatible versions
[INFO] [stderr]       Adding generic-array v0.14.7 (available: v0.14.9)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded stats-cli v3.0.1
[INFO] [stderr]   Downloaded rstest v0.18.2
[INFO] [stderr]   Downloaded rstest_macros v0.18.2
[INFO] [stderr]   Downloaded ftail v0.2.1
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded slog-term v2.9.2
[INFO] [stderr]   Downloaded slog-json v2.6.1
[INFO] [stderr]   Downloaded slog-async v2.8.0
[INFO] [stderr]   Downloaded memory-stats v1.2.0
[INFO] [stderr]   Downloaded slog v2.8.2
[INFO] [stderr]   Downloaded argmin-math v0.3.0
[INFO] [stderr]   Downloaded argmin v0.8.1
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d7a9e99ec713e4cefdf660e411ddeb9d3cf146d7d9ad245189fc210fd34ec8c0
[INFO] running `Command { std: "docker" "start" "-a" "d7a9e99ec713e4cefdf660e411ddeb9d3cf146d7d9ad245189fc210fd34ec8c0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d7a9e99ec713e4cefdf660e411ddeb9d3cf146d7d9ad245189fc210fd34ec8c0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d7a9e99ec713e4cefdf660e411ddeb9d3cf146d7d9ad245189fc210fd34ec8c0", kill_on_drop: false }`
[INFO] [stdout] d7a9e99ec713e4cefdf660e411ddeb9d3cf146d7d9ad245189fc210fd34ec8c0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5ea04b9faad7f4e7c900d7f02cec1cef8a823d40f098b769cee2956c586f3be3
[INFO] running `Command { std: "docker" "start" "-a" "5ea04b9faad7f4e7c900d7f02cec1cef8a823d40f098b769cee2956c586f3be3", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.50
[INFO] [stderr]     Checking bytemuck v1.25.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking futures-sink v0.3.32
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling slog v2.8.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking futures-core v0.3.32
[INFO] [stderr]    Compiling time-macros v0.2.27
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]     Checking typenum v1.20.1
[INFO] [stderr]    Compiling toml_edit v0.25.12+spec-1.1.0
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]    Compiling pest v2.8.6
[INFO] [stderr]     Checking futures-channel v0.3.32
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling rstest_macros v0.18.2
[INFO] [stderr]     Checking thread_local v1.1.9
[INFO] [stderr]    Compiling slog-async v2.8.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking either v1.16.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling radium v0.7.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking is-terminal v0.4.17
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking take_mut v0.2.2
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]    Compiling relative-path v1.9.3
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking term v1.2.1
[INFO] [stderr]     Checking bitflags v2.12.1
[INFO] [stderr]     Checking tap v1.0.1
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking wyz v0.5.1
[INFO] [stderr]    Compiling proc-macro-crate v3.5.0
[INFO] [stderr]     Checking petgraph v0.6.5
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[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling pest_meta v2.8.6
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking getrandom v0.4.2
[INFO] [stderr]     Checking instant v0.1.13
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[INFO] [stderr]     Checking regex v1.12.3
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking funty v2.0.0
[INFO] [stderr]     Checking log v0.4.32
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ftail v0.2.1
[INFO] [stderr]     Checking ntimestamp v1.0.0
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking rand_pcg v0.9.0
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking simba v0.8.1
[INFO] [stderr]     Checking bitvec v1.0.1
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking memory-stats v1.2.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling pest_generator v2.8.6
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling futures-macro v0.3.32
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling num_enum_derive v0.7.6
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling pest_derive v2.8.6
[INFO] [stderr]     Checking futures-util v0.3.32
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.9.4
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking num_enum v0.7.6
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]     Checking rand_distr v0.5.1
[INFO] [stderr]     Checking nalgebra v0.32.6
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking erased-serde v0.3.31
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]     Checking futures-executor v0.3.32
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand_xoshiro v0.6.0
[INFO] [stderr]     Checking futures v0.3.32
[INFO] [stderr]     Checking rstest v0.18.2
[INFO] [stderr]     Checking rand v0.8.6
[INFO] [stderr]     Checking slog-json v2.6.1
[INFO] [stderr]     Checking slog-term v2.9.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking argmin-math v0.3.0
[INFO] [stderr]     Checking stats-cli v3.0.1
[INFO] [stderr]     Checking argmin v0.8.1
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking phylo v0.1.0 (https://github.com/MattesMrzik/rust-phylo?branch=simulate-tkf92-msa#dae7a07b)
[INFO] [stderr]     Checking simulate_tkf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 03s
[INFO] running `Command { std: "docker" "inspect" "5ea04b9faad7f4e7c900d7f02cec1cef8a823d40f098b769cee2956c586f3be3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5ea04b9faad7f4e7c900d7f02cec1cef8a823d40f098b769cee2956c586f3be3", kill_on_drop: false }`
[INFO] [stdout] 5ea04b9faad7f4e7c900d7f02cec1cef8a823d40f098b769cee2956c586f3be3