[INFO] cloning repository https://github.com/samuelburger27/PanGraphX
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/samuelburger27/PanGraphX" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsamuelburger27%2FPanGraphX", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsamuelburger27%2FPanGraphX'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 843fb2745d969997e63fcc943c96d7cceddc9da1
[INFO] checking samuelburger27/PanGraphX/843fb2745d969997e63fcc943c96d7cceddc9da1 against master#53509ca37e3b507887607c2f4a7f23bd4838f099 for pr-156027
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsamuelburger27%2FPanGraphX" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/samuelburger27/PanGraphX
[INFO] finished tweaking git repo https://github.com/samuelburger27/PanGraphX
[INFO] tweaked toml for git repo https://github.com/samuelburger27/PanGraphX written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/samuelburger27/PanGraphX on toolchain 53509ca37e3b507887607c2f4a7f23bd4838f099
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/samuelburger27/PanGraphX already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded time-core v0.1.6
[INFO] [stderr]   Downloaded smawk v0.3.2
[INFO] [stderr]   Downloaded time-macros v0.2.24
[INFO] [stderr]   Downloaded simplelog v0.12.2
[INFO] [stderr]   Downloaded time v0.3.44
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded multimap v0.10.1
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded prost-derive v0.13.5
[INFO] [stderr]   Downloaded fixedbitset v0.5.7
[INFO] [stderr]   Downloaded proc-macro-error-attr2 v2.0.0
[INFO] [stderr]   Downloaded memmap v0.7.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded unicode-ident v1.0.20
[INFO] [stderr]   Downloaded thiserror-impl v2.0.17
[INFO] [stderr]   Downloaded proc-macro-error2 v2.0.1
[INFO] [stderr]   Downloaded ordered-float v5.1.0
[INFO] [stderr]   Downloaded bytecount v0.6.9
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded prost v0.13.5
[INFO] [stderr]   Downloaded quote v1.0.41
[INFO] [stderr]   Downloaded thiserror v2.0.17
[INFO] [stderr]   Downloaded matrixmultiply v0.3.10
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded tempfile v3.23.0
[INFO] [stderr]   Downloaded clap v4.5.50
[INFO] [stderr]   Downloaded prost-build v0.13.5
[INFO] [stderr]   Downloaded prost-types v0.13.5
[INFO] [stderr]   Downloaded bytemuck v1.24.0
[INFO] [stderr]   Downloaded wit-bindgen v0.46.0
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded rand_distr v0.4.3
[INFO] [stderr]   Downloaded gbwt v0.3.1
[INFO] [stderr]   Downloaded safe_arch v0.7.4
[INFO] [stderr]   Downloaded simple-sds-sbwt v0.3.2
[INFO] [stderr]   Downloaded rayon-core v1.13.0
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.33
[INFO] [stderr]   Downloaded wide v0.7.33
[INFO] [stderr]   Downloaded nom v5.1.3
[INFO] [stderr]   Downloaded wasip2 v1.0.1+wasi-0.2.4
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded libm v0.2.15
[INFO] [stderr]   Downloaded rayon v1.11.0
[INFO] [stderr]   Downloaded clap_builder v4.5.50
[INFO] [stderr]   Downloaded syn v2.0.108
[INFO] [stderr]   Downloaded zerocopy v0.8.33
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded rustix v1.1.2
[INFO] [stderr]   Downloaded lexical-core v0.7.6
[INFO] [stderr]   Downloaded petgraph v0.7.1
[INFO] [stderr]   Downloaded libc v0.2.177
[INFO] [stderr]   Downloaded petgraph v0.8.3
[INFO] [stderr]   Downloaded csv v1.4.0
[INFO] [stderr]   Downloaded gfa v0.10.1
[INFO] [stderr]   Downloaded odgi-ffi v1.1.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 86b16bf37089f72e96433a0bee87eb17856fc480a90feed8cb002ca01e6beb2b
[INFO] running `Command { std: "docker" "start" "-a" "86b16bf37089f72e96433a0bee87eb17856fc480a90feed8cb002ca01e6beb2b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "86b16bf37089f72e96433a0bee87eb17856fc480a90feed8cb002ca01e6beb2b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "86b16bf37089f72e96433a0bee87eb17856fc480a90feed8cb002ca01e6beb2b", kill_on_drop: false }`
[INFO] [stdout] 86b16bf37089f72e96433a0bee87eb17856fc480a90feed8cb002ca01e6beb2b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+53509ca37e3b507887607c2f4a7f23bd4838f099" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 60c5f120419520f4bf03efbeb754ef291eb605fced211905ce1b04f9638093c2
[INFO] running `Command { std: "docker" "start" "-a" "60c5f120419520f4bf03efbeb754ef291eb605fced211905ce1b04f9638093c2", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling unicode-ident v1.0.20
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling zerocopy v0.8.33
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling syn v2.0.108
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling hashbrown v0.16.1
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking ryu v1.0.20
[INFO] [stderr]    Compiling bytes v1.11.1
[INFO] [stderr]    Compiling typenum v1.19.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling indexmap v2.13.0
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]     Checking itoa v1.0.15
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling nom v5.1.3
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling tempfile v3.23.0
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]     Checking foldhash v0.1.5
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking log v0.4.28
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling prost-derive v0.13.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling prost v0.13.5
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling prost-types v0.13.5
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking simple-sds-sbwt v0.3.2
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking memmap v0.7.0
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]    Compiling prost-build v0.13.5
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking once_cell v1.21.3
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking gfa v0.10.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking gbwt v0.3.1
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking anstyle-query v1.1.4
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]    Compiling num-conv v0.1.0
[INFO] [stderr]     Checking powerfmt v0.2.0
[INFO] [stderr]    Compiling time-core v0.1.6
[INFO] [stderr]     Checking deranged v0.5.5
[INFO] [stderr]    Compiling pangraphx-core v0.1.0 (/opt/rustwide/workdir/pangraphx-core)
[INFO] [stderr]    Compiling time-macros v0.2.24
[INFO] [stderr]     Checking num_threads v0.1.7
[INFO] [stderr]     Checking clap_lex v0.7.6
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]     Checking clap_builder v4.5.50
[INFO] [stderr]     Checking env_filter v0.1.4
[INFO] [stderr]     Checking unicode-width v0.2.2
[INFO] [stderr]     Checking unicode-linebreak v0.1.5
[INFO] [stderr]     Checking jiff v0.2.15
[INFO] [stderr]     Checking smawk v0.3.2
[INFO] [stderr]     Checking textwrap v0.16.2
[INFO] [stderr]     Checking time v0.3.44
[INFO] [stderr]     Checking clap v4.5.50
[INFO] [stderr]     Checking simplelog v0.12.2
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]     Checking env_logger v0.11.8
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking pangraphx-cli v0.1.0 (/opt/rustwide/workdir/pangraphx-cli)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 56s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "60c5f120419520f4bf03efbeb754ef291eb605fced211905ce1b04f9638093c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "60c5f120419520f4bf03efbeb754ef291eb605fced211905ce1b04f9638093c2", kill_on_drop: false }`
[INFO] [stdout] 60c5f120419520f4bf03efbeb754ef291eb605fced211905ce1b04f9638093c2
