[INFO] cloning repository https://github.com/keithyin/gsmm2-metric
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/gsmm2-metric" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 2dbd674ec643bc56427f283347e5e55640a44b8e
[INFO] checking keithyin/gsmm2-metric against master#03c609abb6638f9d7f49f34326d4137d07f5cd61 for pr-155945
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgsmm2-metric" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/keithyin/gsmm2-metric
[INFO] finished tweaking git repo https://github.com/keithyin/gsmm2-metric
[INFO] tweaked toml for git repo https://github.com/keithyin/gsmm2-metric written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/keithyin/gsmm2-metric on toolchain 03c609abb6638f9d7f49f34326d4137d07f5cd61
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+03c609abb6638f9d7f49f34326d4137d07f5cd61" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/keithyin/gsmm2-metric already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+03c609abb6638f9d7f49f34326d4137d07f5cd61" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded gskits v0.15.15
[INFO] [stderr]   Downloaded intervaltree v0.2.7
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded buffer-redux v1.1.0
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[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded minimap2 v0.1.23+minimap2.2.28
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded mm2 v0.25.6
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded hp_tr_finder v0.3.0
[INFO] [stderr]   Downloaded hp_tr_finder v0.2.3
[INFO] [stderr]   Downloaded minimap2-sys v0.1.30+minimap2.2.30
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded nalgebra v0.33.3
[INFO] [stderr]   Downloaded curl-sys v0.4.88+curl-8.20.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+03c609abb6638f9d7f49f34326d4137d07f5cd61" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 547697de777014c562aa740ed33925aa9c7caa4dac05272301846e7c194a8808
[INFO] running `Command { std: "docker" "start" "-a" "547697de777014c562aa740ed33925aa9c7caa4dac05272301846e7c194a8808", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "547697de777014c562aa740ed33925aa9c7caa4dac05272301846e7c194a8808", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "547697de777014c562aa740ed33925aa9c7caa4dac05272301846e7c194a8808", kill_on_drop: false }`
[INFO] [stdout] 547697de777014c562aa740ed33925aa9c7caa4dac05272301846e7c194a8808
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+03c609abb6638f9d7f49f34326d4137d07f5cd61" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c2aeb6cedcf2f9e3d5c2ee5002ebcd2a35587518bbbeac728951a8bc4ee333d6
[INFO] running `Command { std: "docker" "start" "-a" "c2aeb6cedcf2f9e3d5c2ee5002ebcd2a35587518bbbeac728951a8bc4ee333d6", kill_on_drop: false }`
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[INFO] [stderr]    Compiling serde_core v1.0.228
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[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]     Checking tracing-core v0.1.36
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[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling openssl-sys v0.9.115
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.88+curl-8.20.0
[INFO] [stderr]    Compiling minimap2-sys v0.1.30+minimap2.2.30
[INFO] [stderr]     Checking crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking ordered-float v3.9.2
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[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking nalgebra v0.33.3
[INFO] [stderr]     Checking minimap2 v0.1.23+minimap2.2.28
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]     Checking bio v2.3.0
[INFO] [stderr]     Checking rust-htslib v0.49.0
[INFO] [stderr]     Checking gskits v0.15.15
[INFO] [stderr]     Checking mm2 v0.25.6
[INFO] [stderr]     Checking gsmm2-metric v0.6.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `rev_part`
[INFO] [stdout]    --> src/metrics/hp_metric.rs:379:13
[INFO] [stdout]     |
[INFO] [stdout] 379 |         let rev_part = &seq[1074..1074 + 100];
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rev_part`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `target_seq`
[INFO] [stdout]    --> src/metrics/hp_metric_v2.rs:286:13
[INFO] [stdout]     |
[INFO] [stdout] 286 |         let target_seq = targetname2seq
[INFO] [stdout]     |             ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_target_seq`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `rev_part`
[INFO] [stdout]    --> src/metrics/hp_metric_v2.rs:427:13
[INFO] [stdout]     |
[INFO] [stdout] 427 |         let rev_part = &seq[1074..1074 + 100];
[INFO] [stdout]     |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rev_part`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 48s
[INFO] running `Command { std: "docker" "inspect" "c2aeb6cedcf2f9e3d5c2ee5002ebcd2a35587518bbbeac728951a8bc4ee333d6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c2aeb6cedcf2f9e3d5c2ee5002ebcd2a35587518bbbeac728951a8bc4ee333d6", kill_on_drop: false }`
[INFO] [stdout] c2aeb6cedcf2f9e3d5c2ee5002ebcd2a35587518bbbeac728951a8bc4ee333d6