[INFO] cloning repository https://github.com/BioInfo/dendrite
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/BioInfo/dendrite" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 42d0df68b36f8c316d9de560bb56e35c30b3693c
[INFO] checking BioInfo/dendrite/42d0df68b36f8c316d9de560bb56e35c30b3693c against master#03c609abb6638f9d7f49f34326d4137d07f5cd61 for pr-155945
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBioInfo%2Fdendrite" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/BioInfo/dendrite
[INFO] finished tweaking git repo https://github.com/BioInfo/dendrite
[INFO] tweaked toml for git repo https://github.com/BioInfo/dendrite written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/BioInfo/dendrite on toolchain 03c609abb6638f9d7f49f34326d4137d07f5cd61
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+03c609abb6638f9d7f49f34326d4137d07f5cd61" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/BioInfo/dendrite already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+03c609abb6638f9d7f49f34326d4137d07f5cd61" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/huggingface/candle`
[INFO] [stderr]     Updating git submodule `https://github.com/NVIDIA/cutlass.git`
[INFO] [stderr]     Updating git submodule `https://github.com/NVIDIA/cutlass`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/guoqingbao/bindgen_cuda.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded relative-path v1.9.3
[INFO] [stderr]   Downloaded rstest v0.23.0
[INFO] [stderr]   Downloaded rstest_macros v0.23.0
[INFO] [stderr]   Downloaded reborrow v0.5.5
[INFO] [stderr]   Downloaded dyn-stack-macros v0.1.3
[INFO] [stderr]   Downloaded gemm-f32 v0.18.2
[INFO] [stderr]   Downloaded gemm-c64 v0.18.2
[INFO] [stderr]   Downloaded gemm-c32 v0.18.2
[INFO] [stderr]   Downloaded gemm-f64 v0.18.2
[INFO] [stderr]   Downloaded gemm-f16 v0.18.2
[INFO] [stderr]   Downloaded referencing v0.29.1
[INFO] [stderr]   Downloaded bindgen_cuda v0.1.5
[INFO] [stderr]   Downloaded safetensors v0.5.3
[INFO] [stderr]   Downloaded gemm v0.18.2
[INFO] [stderr]   Downloaded toktrie v1.4.0
[INFO] [stderr]   Downloaded safetensors v0.6.2
[INFO] [stderr]   Downloaded gemm-common v0.18.2
[INFO] [stderr]   Downloaded dyn-stack v0.13.2
[INFO] [stderr]   Downloaded sysctl v0.6.0
[INFO] [stderr]   Downloaded derivre v0.3.8
[INFO] [stderr]   Downloaded zmij v0.1.8
[INFO] [stderr]   Downloaded float8 v0.5.0
[INFO] [stderr]   Downloaded ug-cuda v0.5.0
[INFO] [stderr]   Downloaded ug v0.5.0
[INFO] [stderr]   Downloaded serde_json v1.0.147
[INFO] [stderr]   Downloaded pulp v0.21.5
[INFO] [stderr]   Downloaded llguidance v1.4.0
[INFO] [stderr]   Downloaded proptest v1.9.0
[INFO] [stderr]   Downloaded cudarc v0.17.8
[INFO] [stderr]   Downloaded cudarc v0.18.2
[INFO] [stderr]   Downloaded float8 v0.3.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+03c609abb6638f9d7f49f34326d4137d07f5cd61" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 57d1f51e389a7b67f75f33abf7502ed320c13c479e48644837ddf034b782ae1a
[INFO] running `Command { std: "docker" "start" "-a" "57d1f51e389a7b67f75f33abf7502ed320c13c479e48644837ddf034b782ae1a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "57d1f51e389a7b67f75f33abf7502ed320c13c479e48644837ddf034b782ae1a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "57d1f51e389a7b67f75f33abf7502ed320c13c479e48644837ddf034b782ae1a", kill_on_drop: false }`
[INFO] [stdout] 57d1f51e389a7b67f75f33abf7502ed320c13c479e48644837ddf034b782ae1a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+03c609abb6638f9d7f49f34326d4137d07f5cd61" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 39504c27886fa3e3f2c207e6b68f3466e64f8f2b5372a0d1b6522a3f93d104a0
[INFO] running `Command { std: "docker" "start" "-a" "39504c27886fa3e3f2c207e6b68f3466e64f8f2b5372a0d1b6522a3f93d104a0", kill_on_drop: false }`
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling libc v0.2.178
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking bitflags v2.10.0
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling serde_json v1.0.147
[INFO] [stderr]     Checking itoa v1.0.16
[INFO] [stderr]     Checking indexmap v2.12.1
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking zmij v0.1.8
[INFO] [stderr]    Compiling syn v2.0.111
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling cc v1.2.50
[INFO] [stderr]    Compiling toml_parser v1.0.6+spec-1.1.0
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling toml_datetime v0.7.5+spec-1.1.0
[INFO] [stderr]     Checking reborrow v0.5.5
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]    Compiling toml_edit v0.23.10+spec-1.0.0
[INFO] [stderr]     Checking tracing-core v0.1.36
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling proc-macro-crate v3.4.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking futures-core v0.3.31
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]     Checking futures-sink v0.3.31
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]    Compiling bindgen v0.71.1
[INFO] [stderr]     Checking futures-channel v0.3.31
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking futures-io v0.3.31
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]     Checking pin-utils v0.1.0
[INFO] [stderr]     Checking futures-task v0.3.31
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]    Compiling ref-cast v1.0.25
[INFO] [stderr]    Compiling semver v1.0.27
[INFO] [stderr]     Checking lock_api v0.4.14
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling rustc_version v0.4.1
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]    Compiling portable-atomic v1.12.0
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking unicode-width v0.2.2
[INFO] [stderr]     Checking borrow-or-share v0.2.4
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking console v0.15.11
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]     Checking castaway v0.2.4
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking unicode-segmentation v1.12.0
[INFO] [stderr]     Checking ryu v1.0.21
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling macro_rules_attribute-proc_macro v0.2.2
[INFO] [stderr]    Compiling rstest_macros v0.23.0
[INFO] [stderr]    Compiling relative-path v1.9.3
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking colorchoice v1.0.4
[INFO] [stderr]    Compiling llguidance v1.4.0
[INFO] [stderr]     Checking base64 v0.13.1
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking anstyle-query v1.1.5
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking fancy-regex v0.13.0
[INFO] [stderr]     Checking rayon-cond v0.4.0
[INFO] [stderr]     Checking unicode-normalization-alignments v0.1.12
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking signal-hook-registry v1.4.7
[INFO] [stderr]     Checking mio v1.1.1
[INFO] [stderr]     Checking socket2 v0.6.1
[INFO] [stderr]     Checking unicode_categories v0.1.1
[INFO] [stderr]     Checking macro_rules_attribute v0.2.2
[INFO] [stderr]     Checking ciborium-io v0.2.2
[INFO] [stderr]     Checking clap_lex v0.7.6
[INFO] [stderr]     Checking bytes v1.11.0
[INFO] [stderr]     Checking plotters-backend v0.3.7
[INFO] [stderr]     Checking indicatif v0.17.11
[INFO] [stderr]     Checking futures-timer v3.0.3
[INFO] [stderr]     Checking clap_builder v4.5.53
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking plotters-svg v0.3.7
[INFO] [stderr]     Checking cast v0.3.0
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking is-terminal v0.4.17
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]     Checking plotters v0.3.7
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/03c609abb6638f9d7f49f34326d4137d07f5cd61/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.111/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C debug-assertions=on --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=584ebd6e79d048e5 -C extra-filename=-da024a0123ad847b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-24df2ac9e31e90a4.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-78faf78392e75a4c.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-2d5420bcc007beb0.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `clang-sys` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/03c609abb6638f9d7f49f34326d4137d07f5cd61/bin/rustc --crate-name clang_sys --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/clang-sys-1.8.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=3 -C embed-bitcode=no -C debug-assertions=on --cfg 'feature="clang_10_0"' --cfg 'feature="clang_11_0"' --cfg 'feature="clang_3_5"' --cfg 'feature="clang_3_6"' --cfg 'feature="clang_3_7"' --cfg 'feature="clang_3_8"' --cfg 'feature="clang_3_9"' --cfg 'feature="clang_4_0"' --cfg 'feature="clang_5_0"' --cfg 'feature="clang_6_0"' --cfg 'feature="clang_7_0"' --cfg 'feature="clang_8_0"' --cfg 'feature="clang_9_0"' --cfg 'feature="libloading"' --cfg 'feature="runtime"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clang_10_0", "clang_11_0", "clang_12_0", "clang_13_0", "clang_14_0", "clang_15_0", "clang_16_0", "clang_17_0", "clang_18_0", "clang_3_5", "clang_3_6", "clang_3_7", "clang_3_8", "clang_3_9", "clang_4_0", "clang_5_0", "clang_6_0", "clang_7_0", "clang_8_0", "clang_9_0", "libcpp", "libloading", "runtime", "static"))' -C metadata=57fb5121786a53ee -C extra-filename=-ec619b9075e1c0be --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern glob=/opt/rustwide/target/debug/deps/libglob-10be2c65f12fa63f.rmeta --extern libc=/opt/rustwide/target/debug/deps/liblibc-aaff64bf393c3935.rmeta --extern libloading=/opt/rustwide/target/debug/deps/liblibloading-b863d3106f857298.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "39504c27886fa3e3f2c207e6b68f3466e64f8f2b5372a0d1b6522a3f93d104a0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "39504c27886fa3e3f2c207e6b68f3466e64f8f2b5372a0d1b6522a3f93d104a0", kill_on_drop: false }`
[INFO] [stdout] 39504c27886fa3e3f2c207e6b68f3466e64f8f2b5372a0d1b6522a3f93d104a0
