[INFO] fetching crate mm2 0.25.6...
[INFO] checking mm2-0.25.6 against 1.95.0 for pr-155915
[INFO] extracting crate mm2 0.25.6 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate mm2 0.25.6
[INFO] finished tweaking crates.io crate mm2 0.25.6
[INFO] tweaked toml for crates.io crate mm2 0.25.6 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate mm2 0.25.6 on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate mm2 0.25.6 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded log v0.4.25
[INFO] [stderr]   Downloaded sha1_smol v1.0.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded zerofrom-derive v0.1.5
[INFO] [stderr]   Downloaded serde v1.0.217
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded uuid v1.12.1
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded zerofrom v0.1.5
[INFO] [stderr]   Downloaded time-macros v0.2.19
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded intervaltree v0.2.7
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded unicode-ident v1.0.15
[INFO] [stderr]   Downloaded clap_derive v4.5.24
[INFO] [stderr]   Downloaded thiserror v2.0.11
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded console v0.15.10
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded gskits v0.15.12
[INFO] [stderr]   Downloaded rustversion v1.0.19
[INFO] [stderr]   Downloaded anyhow v1.0.95
[INFO] [stderr]   Downloaded serde_derive v1.0.217
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded clap v4.5.27
[INFO] [stderr]   Downloaded minimap2 v0.1.23+minimap2.2.28
[INFO] [stderr]   Downloaded openssl-sys v0.9.104
[INFO] [stderr]   Downloaded matrixmultiply v0.3.9
[INFO] [stderr]   Downloaded bytemuck v1.21.0
[INFO] [stderr]   Downloaded cc v1.2.10
[INFO] [stderr]   Downloaded time v0.3.37
[INFO] [stderr]   Downloaded indicatif v0.17.9
[INFO] [stderr]   Downloaded ntapi v0.4.1
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded clap_builder v4.5.27
[INFO] [stderr]   Downloaded serde_json v1.0.137
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded hp_tr_finder v0.2.3
[INFO] [stderr]   Downloaded syn v2.0.96
[INFO] [stderr]   Downloaded bio v2.0.3
[INFO] [stderr]   Downloaded chrono v0.4.39
[INFO] [stderr]   Downloaded portable-atomic v1.10.0
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded cmake v0.1.52
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded minimap2-sys v0.1.21+minimap2.2.28
[INFO] [stderr]   Downloaded thiserror-impl v2.0.11
[INFO] [stderr]   Downloaded needletail v0.6.1
[INFO] [stderr]   Downloaded litemap v0.7.4
[INFO] [stderr]   Downloaded libz-sys v1.1.21
[INFO] [stderr]   Downloaded curl-sys v0.4.78+curl-8.11.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.4.1+3.4.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a16a9e588621dc6677ea0ebaa9b6700fd1d8a968baffe6f43b3be1ec5531191a
[INFO] running `Command { std: "docker" "start" "-a" "a16a9e588621dc6677ea0ebaa9b6700fd1d8a968baffe6f43b3be1ec5531191a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a16a9e588621dc6677ea0ebaa9b6700fd1d8a968baffe6f43b3be1ec5531191a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a16a9e588621dc6677ea0ebaa9b6700fd1d8a968baffe6f43b3be1ec5531191a", kill_on_drop: false }`
[INFO] [stdout] a16a9e588621dc6677ea0ebaa9b6700fd1d8a968baffe6f43b3be1ec5531191a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 51766120f67d420ba2b943e33f19bd0db619a2037f8f1a8cef2daddb33e6dfde
[INFO] running `Command { std: "docker" "start" "-a" "51766120f67d420ba2b943e33f19bd0db619a2037f8f1a8cef2daddb33e6dfde", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling unicode-ident v1.0.15
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling serde v1.0.217
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking bytemuck v1.21.0
[INFO] [stderr]     Checking litemap v0.7.4
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]     Checking once_cell v1.20.2
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]    Compiling rustversion v1.0.19
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]     Checking itoa v1.0.14
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking wide v0.7.32
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling bitflags v2.8.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking tracing-core v0.1.33
[INFO] [stderr]    Compiling anyhow v1.0.95
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking hashbrown v0.15.2
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]    Compiling portable-atomic v1.10.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]     Checking regex-syntax v0.6.29
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]    Compiling syn v2.0.96
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]    Compiling cc v1.2.10
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling serde_json v1.0.137
[INFO] [stderr]     Checking deranged v0.3.11
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking indexmap v2.7.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v4.6.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling cmake v0.1.52
[INFO] [stderr]    Compiling openssl-src v300.4.1+3.4.0
[INFO] [stderr]     Checking simba v0.8.1
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking console v0.15.10
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking log v0.4.25
[INFO] [stderr]     Checking num_threads v0.1.7
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking time-core v0.1.2
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking sha1_smol v1.0.1
[INFO] [stderr]     Checking time v0.3.37
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]    Compiling libz-sys v1.1.21
[INFO] [stderr]    Compiling openssl-sys v0.9.104
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling curl-sys v0.4.78+curl-8.11.0
[INFO] [stderr]    Compiling minimap2-sys v0.1.21+minimap2.2.28
[INFO] [stderr]     Checking matchers v0.1.0
[INFO] [stderr]     Checking uuid v1.12.1
[INFO] [stderr]     Checking indicatif v0.17.9
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking needletail v0.6.1
[INFO] [stderr]     Checking chrono v0.4.39
[INFO] [stderr]     Checking clap_builder v4.5.27
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]     Checking sysinfo v0.34.2
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking intervaltree v0.2.7
[INFO] [stderr]     Checking crossbeam-queue v0.3.12
[INFO] [stderr]     Checking crossbeam-channel v0.5.14
[INFO] [stderr]     Checking thread_local v1.1.8
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking hp_tr_finder v0.2.3
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking crossbeam v0.8.4
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.5
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.217
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling thiserror-impl v2.0.11
[INFO] [stderr]    Compiling tracing-attributes v0.1.28
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]     Checking zerofrom v0.1.5
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]    Compiling clap_derive v4.5.24
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking minimap2 v0.1.23+minimap2.2.28
[INFO] [stderr]     Checking zerovec v0.10.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking tracing v0.1.41
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking tinystr v0.7.6
[INFO] [stderr]     Checking icu_collections v1.5.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking icu_locid v1.5.0
[INFO] [stderr]     Checking clap v4.5.27
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking icu_provider v1.5.0
[INFO] [stderr]     Checking nalgebra v0.32.6
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking icu_locid_transform v1.5.0
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking icu_properties v1.5.1
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.10.0
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking tracing-serde v0.2.0
[INFO] [stderr]     Checking tracing-subscriber v0.3.19
[INFO] [stderr]     Checking icu_normalizer v1.5.0
[INFO] [stderr]     Checking idna_adapter v1.2.0
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]     Checking url v2.5.4
[INFO] [stderr]     Checking statrs v0.17.1
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v2.0.3
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking rust-htslib v0.49.0
[INFO] [stderr]     Checking gskits v0.15.12
[INFO] [stderr]     Checking mm2 v0.25.6 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `clap::builder::Str`
[INFO] [stdout]  --> src/align_processor/hp_tr_metric.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use clap::builder::Str;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ext::BamRecordExtensions` and `self`
[INFO] [stdout]  --> src/bam_writer.rs:9:24
[INFO] [stdout]   |
[INFO] [stdout] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header};
[INFO] [stdout]   |                        ^^^^^^^^^^^^^^^^^^^^^^^^                                 ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `clap::builder::Str`
[INFO] [stdout]  --> src/align_processor/hp_tr_metric.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use clap::builder::Str;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ext::BamRecordExtensions` and `self`
[INFO] [stdout]  --> src/bam_writer.rs:9:24
[INFO] [stdout]   |
[INFO] [stdout] 9 | use rust_htslib::bam::{ext::BamRecordExtensions, header::HeaderRecord, record::{self, Aux}, Header};
[INFO] [stdout]   |                        ^^^^^^^^^^^^^^^^^^^^^^^^                                 ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/lib.rs:687:13
[INFO] [stdout]     |
[INFO] [stdout] 687 |         let mut records = vec![r1, r2, r3];
[INFO] [stdout]     |             ----^^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `records`
[INFO] [stdout]    --> src/lib.rs:687:13
[INFO] [stdout]     |
[INFO] [stdout] 687 |         let mut records = vec![r1, r2, r3];
[INFO] [stdout]     |             ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_records`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `aligner`
[INFO] [stdout]    --> src/lib.rs:708:17
[INFO] [stdout]     |
[INFO] [stdout] 708 |             let aligner = NoMemLeakAligner(aligner);
[INFO] [stdout]     |                 ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aligner`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seq`
[INFO] [stdout]     --> src/lib.rs:1057:13
[INFO] [stdout]      |
[INFO] [stdout] 1057 |         let seq = b"AANNNNNNNNNNNNNAAAAAAAAANNNNCCCGTTT";
[INFO] [stdout]      |             ^^^ help: if this is intentional, prefix it with an underscore: `_seq`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `index_params` is assigned to, but never used
[INFO] [stdout]     --> src/lib.rs:1257:13
[INFO] [stdout]      |
[INFO] [stdout] 1257 |         let mut index_params = IndexParams::default();
[INFO] [stdout]      |             ^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: consider using `_index_params` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `index_params` is never read
[INFO] [stdout]     --> src/lib.rs:1258:9
[INFO] [stdout]      |
[INFO] [stdout] 1258 |         index_params.kmer = Some(11);
[INFO] [stdout]      |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout]      = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `index_params` is never read
[INFO] [stdout]     --> src/lib.rs:1259:9
[INFO] [stdout]      |
[INFO] [stdout] 1259 |         index_params.wins = Some(1);
[INFO] [stdout]      |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `dump_smc_input_bam` is never used
[INFO] [stdout]  --> src/bin/bam-rw.rs:5:4
[INFO] [stdout]   |
[INFO] [stdout] 5 | fn dump_smc_input_bam(subreads_bam_path: &str, o_filepath: &str, bam_threads: Option<usize>) {
[INFO] [stdout]   |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `intervaltree`
[INFO] [stdout]    --> src/bin/gsmm2-hp-tr-metric.rs:518:46
[INFO] [stdout]     |
[INFO] [stdout] 518 |     use hp_tr_finder::{all_seq_hp_tr_finder, intervaltree, UnitAndRepeats};
[INFO] [stdout]     |                                              ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `dump_smc_input_bam` is never used
[INFO] [stdout]  --> src/bin/bam-rw.rs:5:4
[INFO] [stdout]   |
[INFO] [stdout] 5 | fn dump_smc_input_bam(subreads_bam_path: &str, o_filepath: &str, bam_threads: Option<usize>) {
[INFO] [stdout]   |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seq`
[INFO] [stdout]    --> src/bin/gsmm2-time-err.rs:547:13
[INFO] [stdout]     |
[INFO] [stdout] 547 | ...   let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAAC...
[INFO] [stdout]     |           ^^^ help: if this is intentional, prefix it with an underscore: `_seq`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seq`
[INFO] [stdout]    --> src/bin/gsmm2-aligned-metric.rs:499:13
[INFO] [stdout]     |
[INFO] [stdout] 499 | ...   let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAAC...
[INFO] [stdout]     |           ^^^ help: if this is intentional, prefix it with an underscore: `_seq`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `seq`
[INFO] [stdout]    --> src/bin/gsmm2-hp-tr-metric.rs:567:13
[INFO] [stdout]     |
[INFO] [stdout] 567 | ...   let seq = b"GAGAGAAGAGATGTTCTACTGGTGTGCCGATGGTGGCGGATTAGTCCTCGCTCAATCTGGGGTCAGGCGGTGATGGTCTATTGCTATCAATTATACAACAATTAAACAACAAC...
[INFO] [stdout]     |           ^^^ help: if this is intentional, prefix it with an underscore: `_seq`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 23s
[INFO] running `Command { std: "docker" "inspect" "51766120f67d420ba2b943e33f19bd0db619a2037f8f1a8cef2daddb33e6dfde", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "51766120f67d420ba2b943e33f19bd0db619a2037f8f1a8cef2daddb33e6dfde", kill_on_drop: false }`
[INFO] [stdout] 51766120f67d420ba2b943e33f19bd0db619a2037f8f1a8cef2daddb33e6dfde
