[INFO] fetching crate bio-jtools 0.2.0...
[INFO] checking bio-jtools-0.2.0 against 1.95.0 for pr-155915
[INFO] extracting crate bio-jtools 0.2.0 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate bio-jtools 0.2.0
[INFO] finished tweaking crates.io crate bio-jtools 0.2.0
[INFO] tweaked toml for crates.io crate bio-jtools 0.2.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate bio-jtools 0.2.0 on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate bio-jtools 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 48f2af8eaa02ba42adf3c22208a1752df2aa566573deb766d38989c91664ee6d
[INFO] running `Command { std: "docker" "start" "-a" "48f2af8eaa02ba42adf3c22208a1752df2aa566573deb766d38989c91664ee6d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "48f2af8eaa02ba42adf3c22208a1752df2aa566573deb766d38989c91664ee6d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "48f2af8eaa02ba42adf3c22208a1752df2aa566573deb766d38989c91664ee6d", kill_on_drop: false }`
[INFO] [stdout] 48f2af8eaa02ba42adf3c22208a1752df2aa566573deb766d38989c91664ee6d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1c8e7c48c1f2ffd7505c4d0baf3504a0f5310171a8809f2dfabc310b6de71994
[INFO] running `Command { std: "docker" "start" "-a" "1c8e7c48c1f2ffd7505c4d0baf3504a0f5310171a8809f2dfabc310b6de71994", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling proc-macro2 v1.0.51
[INFO] [stderr]    Compiling unicode-ident v1.0.6
[INFO] [stderr]    Compiling quote v1.0.23
[INFO] [stderr]    Compiling syn v1.0.107
[INFO] [stderr]    Compiling memchr v2.5.0
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[INFO] [stdout] warning: function `filter` is never used
[INFO] [stdout]   --> src/align/filter.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub fn filter<T: RecordReader, S: RecordWriter>(
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `genome_depth` and `genome_support` are never read
[INFO] [stdout]    --> src/align/info_stats.rs:130:5
[INFO] [stdout]     |
[INFO] [stdout] 110 | pub struct SamBamCramStats {
[INFO] [stdout]     |            --------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 130 |     genome_depth: (),
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 133 |     genome_support: (),
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `SamBamCramStats` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `Cram` is never constructed
[INFO] [stdout]  --> src/align/reader.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub enum SamBamCramReader<R1: BufRead, R2: Read> {
[INFO] [stdout]   |          ---------------- variant in this enum
[INFO] [stdout] ...
[INFO] [stdout] 9 |     Cram,
[INFO] [stdout]   |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias `Date` is never used
[INFO] [stdout]   --> src/data/mod.rs:16:6
[INFO] [stdout]    |
[INFO] [stdout] 16 | type Date = chrono::NaiveDate;
[INFO] [stdout]    |      ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `RESERVED_DIRNAMES` is never used
[INFO] [stdout]   --> src/data/mod.rs:18:7
[INFO] [stdout]    |
[INFO] [stdout] 18 | const RESERVED_DIRNAMES: [&'static str; 7] = [
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `RESERVED_FILENAMES` is never used
[INFO] [stdout]   --> src/data/mod.rs:21:7
[INFO] [stdout]    |
[INFO] [stdout] 21 | const RESERVED_FILENAMES: [&'static str; 5] = [
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SeqDir` is never constructed
[INFO] [stdout]   --> src/data/mod.rs:30:8
[INFO] [stdout]    |
[INFO] [stdout] 30 | struct SeqDir {
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]    --> src/data/mod.rs:42:12
[INFO] [stdout]     |
[INFO] [stdout]  40 | impl SeqDir {
[INFO] [stdout]     | ----------- associated items in this implementation
[INFO] [stdout]  41 |     /// Construct a new SeqDir object from a path
[INFO] [stdout]  42 |     pub fn new(path: &Path) -> SeqDir {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 104 |     pub fn path(&self) -> &Path {
[INFO] [stdout]     |            ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 109 |     pub fn date(&self) -> Date {
[INFO] [stdout]     |            ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 114 |     pub fn instrument(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 119 |     pub fn run(&self) -> u16 {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 124 |     pub fn position(&self) -> char {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 129 |     pub fn flowcell(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 134 |     pub fn description(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 139 |     pub fn create_reserved_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 158 |     pub fn create_reserved_dirs(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 177 |     pub fn relocate_hts_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SeqSample` is never constructed
[INFO] [stdout]    --> src/data/mod.rs:229:8
[INFO] [stdout]     |
[INFO] [stdout] 229 | struct SeqSample {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_reserved_file` is never used
[INFO] [stdout]    --> src/data/mod.rs:248:4
[INFO] [stdout]     |
[INFO] [stdout] 248 | fn create_reserved_file(seq: &SeqDir, file: &str) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_reserved_dir` is never used
[INFO] [stdout]    --> src/data/mod.rs:258:4
[INFO] [stdout]     |
[INFO] [stdout] 258 | fn create_reserved_dir(p: PathBuf) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_readme` is never used
[INFO] [stdout]    --> src/data/mod.rs:263:4
[INFO] [stdout]     |
[INFO] [stdout] 263 | fn create_readme(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_cluster_yaml` is never used
[INFO] [stdout]    --> src/data/mod.rs:284:4
[INFO] [stdout]     |
[INFO] [stdout] 284 | fn create_cluster_yaml(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_snakefile` is never used
[INFO] [stdout]    --> src/data/mod.rs:302:4
[INFO] [stdout]     |
[INFO] [stdout] 302 | fn create_snakefile(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `update_sample` is never used
[INFO] [stdout]    --> src/data/mod.rs:407:4
[INFO] [stdout]     |
[INFO] [stdout] 407 | fn update_sample(s: &mut SeqSample, mate: String, lane: String) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_config` is never used
[INFO] [stdout]    --> src/data/mod.rs:416:4
[INFO] [stdout]     |
[INFO] [stdout] 416 | fn create_config(sd: &SeqDir, dryrun: bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `mv_to_dir` is never used
[INFO] [stdout]    --> src/data/mod.rs:505:4
[INFO] [stdout]     |
[INFO] [stdout] 505 | fn mv_to_dir(file: &Path, dir: &Path) {
[INFO] [stdout]     |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `organize` is never used
[INFO] [stdout]    --> src/data/mod.rs:510:8
[INFO] [stdout]     |
[INFO] [stdout] 510 | pub fn organize(indir: &Path, dryrun: bool, verbose: bool) {
[INFO] [stdout]     |        ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait `RecordFilter` is never used
[INFO] [stdout]  --> src/record/filter.rs:9:11
[INFO] [stdout]   |
[INFO] [stdout] 9 | pub trait RecordFilter {
[INFO] [stdout]   |           ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `CasavaV1_8Name` is never constructed
[INFO] [stdout]   --> src/record/header.rs:43:19
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub(crate) struct CasavaV1_8Name {
[INFO] [stdout]    |                   ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SraName` is never constructed
[INFO] [stdout]   --> src/record/header.rs:69:19
[INFO] [stdout]    |
[INFO] [stdout] 69 | pub(crate) struct SraName<'id> {
[INFO] [stdout]    |                   ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `process_illumina_pre_v1_8_split_record` is never used
[INFO] [stdout]    --> src/record/stats.rs:104:8
[INFO] [stdout]     |
[INFO] [stdout]   5 | pub trait RecordStats<'a> {
[INFO] [stdout]     |           ----------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 104 |     fn process_illumina_pre_v1_8_split_record(&mut self) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking zstd v0.12.3+zstd.1.5.2
[INFO] [stderr]     Checking cargo-nextest v0.9.49
[INFO] [stdout] warning: function `filter` is never used
[INFO] [stdout]   --> src/align/filter.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub fn filter<T: RecordReader, S: RecordWriter>(
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `genome_depth` and `genome_support` are never read
[INFO] [stdout]    --> src/align/info_stats.rs:130:5
[INFO] [stdout]     |
[INFO] [stdout] 110 | pub struct SamBamCramStats {
[INFO] [stdout]     |            --------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 130 |     genome_depth: (),
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 133 |     genome_support: (),
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `SamBamCramStats` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `Cram` is never constructed
[INFO] [stdout]  --> src/align/reader.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub enum SamBamCramReader<R1: BufRead, R2: Read> {
[INFO] [stdout]   |          ---------------- variant in this enum
[INFO] [stdout] ...
[INFO] [stdout] 9 |     Cram,
[INFO] [stdout]   |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: type alias `Date` is never used
[INFO] [stdout]   --> src/data/mod.rs:16:6
[INFO] [stdout]    |
[INFO] [stdout] 16 | type Date = chrono::NaiveDate;
[INFO] [stdout]    |      ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `RESERVED_DIRNAMES` is never used
[INFO] [stdout]   --> src/data/mod.rs:18:7
[INFO] [stdout]    |
[INFO] [stdout] 18 | const RESERVED_DIRNAMES: [&'static str; 7] = [
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `RESERVED_FILENAMES` is never used
[INFO] [stdout]   --> src/data/mod.rs:21:7
[INFO] [stdout]    |
[INFO] [stdout] 21 | const RESERVED_FILENAMES: [&'static str; 5] = [
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SeqDir` is never constructed
[INFO] [stdout]   --> src/data/mod.rs:30:8
[INFO] [stdout]    |
[INFO] [stdout] 30 | struct SeqDir {
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]    --> src/data/mod.rs:42:12
[INFO] [stdout]     |
[INFO] [stdout]  40 | impl SeqDir {
[INFO] [stdout]     | ----------- associated items in this implementation
[INFO] [stdout]  41 |     /// Construct a new SeqDir object from a path
[INFO] [stdout]  42 |     pub fn new(path: &Path) -> SeqDir {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 104 |     pub fn path(&self) -> &Path {
[INFO] [stdout]     |            ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 109 |     pub fn date(&self) -> Date {
[INFO] [stdout]     |            ^^^^
[INFO] [stdout] ...
[INFO] [stdout] 114 |     pub fn instrument(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 119 |     pub fn run(&self) -> u16 {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 124 |     pub fn position(&self) -> char {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 129 |     pub fn flowcell(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 134 |     pub fn description(&self) -> &str {
[INFO] [stdout]     |            ^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 139 |     pub fn create_reserved_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 158 |     pub fn create_reserved_dirs(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 177 |     pub fn relocate_hts_files(&self, verbose: bool, dryrun: bool) {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SeqSample` is never constructed
[INFO] [stdout]    --> src/data/mod.rs:229:8
[INFO] [stdout]     |
[INFO] [stdout] 229 | struct SeqSample {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_reserved_file` is never used
[INFO] [stdout]    --> src/data/mod.rs:248:4
[INFO] [stdout]     |
[INFO] [stdout] 248 | fn create_reserved_file(seq: &SeqDir, file: &str) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_reserved_dir` is never used
[INFO] [stdout]    --> src/data/mod.rs:258:4
[INFO] [stdout]     |
[INFO] [stdout] 258 | fn create_reserved_dir(p: PathBuf) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_readme` is never used
[INFO] [stdout]    --> src/data/mod.rs:263:4
[INFO] [stdout]     |
[INFO] [stdout] 263 | fn create_readme(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_cluster_yaml` is never used
[INFO] [stdout]    --> src/data/mod.rs:284:4
[INFO] [stdout]     |
[INFO] [stdout] 284 | fn create_cluster_yaml(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_snakefile` is never used
[INFO] [stdout]    --> src/data/mod.rs:302:4
[INFO] [stdout]     |
[INFO] [stdout] 302 | fn create_snakefile(seq: &SeqDir) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `update_sample` is never used
[INFO] [stdout]    --> src/data/mod.rs:407:4
[INFO] [stdout]     |
[INFO] [stdout] 407 | fn update_sample(s: &mut SeqSample, mate: String, lane: String) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `create_config` is never used
[INFO] [stdout]    --> src/data/mod.rs:416:4
[INFO] [stdout]     |
[INFO] [stdout] 416 | fn create_config(sd: &SeqDir, dryrun: bool) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `mv_to_dir` is never used
[INFO] [stdout]    --> src/data/mod.rs:505:4
[INFO] [stdout]     |
[INFO] [stdout] 505 | fn mv_to_dir(file: &Path, dir: &Path) {
[INFO] [stdout]     |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `organize` is never used
[INFO] [stdout]    --> src/data/mod.rs:510:8
[INFO] [stdout]     |
[INFO] [stdout] 510 | pub fn organize(indir: &Path, dryrun: bool, verbose: bool) {
[INFO] [stdout]     |        ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait `RecordFilter` is never used
[INFO] [stdout]  --> src/record/filter.rs:9:11
[INFO] [stdout]   |
[INFO] [stdout] 9 | pub trait RecordFilter {
[INFO] [stdout]   |           ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `CasavaV1_8Name` is never constructed
[INFO] [stdout]   --> src/record/header.rs:43:19
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub(crate) struct CasavaV1_8Name {
[INFO] [stdout]    |                   ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `SraName` is never constructed
[INFO] [stdout]   --> src/record/header.rs:69:19
[INFO] [stdout]    |
[INFO] [stdout] 69 | pub(crate) struct SraName<'id> {
[INFO] [stdout]    |                   ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `process_illumina_pre_v1_8_split_record` is never used
[INFO] [stdout]    --> src/record/stats.rs:104:8
[INFO] [stdout]     |
[INFO] [stdout]   5 | pub trait RecordStats<'a> {
[INFO] [stdout]     |           ----------- method in this trait
[INFO] [stdout] ...
[INFO] [stdout] 104 |     fn process_illumina_pre_v1_8_split_record(&mut self) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 03s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, nom v5.1.2, quick-xml v0.22.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "1c8e7c48c1f2ffd7505c4d0baf3504a0f5310171a8809f2dfabc310b6de71994", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1c8e7c48c1f2ffd7505c4d0baf3504a0f5310171a8809f2dfabc310b6de71994", kill_on_drop: false }`
[INFO] [stdout] 1c8e7c48c1f2ffd7505c4d0baf3504a0f5310171a8809f2dfabc310b6de71994
