[INFO] cloning repository https://github.com/tneely/bio-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tneely/bio-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftneely%2Fbio-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftneely%2Fbio-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 2fabbed7b2ec40dd5e24fd50223a8f5b306b3567
[INFO] checking tneely/bio-rs against 1.95.0 for pr-155915
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftneely%2Fbio-rs" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/tneely/bio-rs
[INFO] finished tweaking git repo https://github.com/tneely/bio-rs
[INFO] tweaked toml for git repo https://github.com/tneely/bio-rs written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/tneely/bio-rs on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/tneely/bio-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded err-derive v0.3.1
[INFO] [stderr]   Downloaded circular v0.3.0
[INFO] [stderr]   Downloaded serde_bytes v0.11.8
[INFO] [stderr]   Downloaded is-terminal v0.4.1
[INFO] [stderr]   Downloaded parking_lot_core v0.9.6
[INFO] [stderr]   Downloaded ordered-float v3.4.0
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded bytemuck v1.13.0
[INFO] [stderr]   Downloaded cc v1.0.77
[INFO] [stderr]   Downloaded wide v0.7.6
[INFO] [stderr]   Downloaded regex v1.7.0
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded bio v1.1.0
[INFO] [stderr]   Downloaded clap v4.0.29
[INFO] [stderr]   Downloaded syn v1.0.105
[INFO] [stderr]   Downloaded rustix v0.36.4
[INFO] [stderr]   Downloaded libc v0.2.138
[INFO] [stderr]   Downloaded linux-raw-sys v0.1.3
[INFO] [stderr]   Downloaded gb-io v0.7.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 73fc388439a7568136ac87a144f773f93213a101cbd483933c8defba0b77b550
[INFO] running `Command { std: "docker" "start" "-a" "73fc388439a7568136ac87a144f773f93213a101cbd483933c8defba0b77b550", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "73fc388439a7568136ac87a144f773f93213a101cbd483933c8defba0b77b550", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "73fc388439a7568136ac87a144f773f93213a101cbd483933c8defba0b77b550", kill_on_drop: false }`
[INFO] [stdout] 73fc388439a7568136ac87a144f773f93213a101cbd483933c8defba0b77b550
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fc49d742cb95cdb58c9eca8cbdb1fa6945c761a10fa7e6e5c82b8555aab6fab6
[INFO] running `Command { std: "docker" "start" "-a" "fc49d742cb95cdb58c9eca8cbdb1fa6945c761a10fa7e6e5c82b8555aab6fab6", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.47
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling unicode-ident v1.0.5
[INFO] [stderr]    Compiling syn v1.0.105
[INFO] [stderr]    Compiling libc v0.2.138
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling serde v1.0.152
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]     Checking bytemuck v1.13.0
[INFO] [stderr]    Compiling phf_shared v0.10.0
[INFO] [stderr]    Compiling parking_lot_core v0.9.6
[INFO] [stderr]    Compiling io-lifetimes v1.0.3
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]    Compiling rustix v0.36.4
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]    Compiling err-derive v0.3.1
[INFO] [stderr]    Compiling unicode-xid v0.2.4
[INFO] [stderr]     Checking safe_arch v0.6.0
[INFO] [stderr]     Checking once_cell v1.16.0
[INFO] [stderr]    Compiling anyhow v1.0.69
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]     Checking either v1.8.0
[INFO] [stderr]     Checking linux-raw-sys v0.1.3
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking clap_lex v0.3.0
[INFO] [stderr]     Checking circular v0.3.0
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking aho-corasick v0.7.20
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking wide v0.7.6
[INFO] [stderr]    Compiling getrandom v0.2.8
[INFO] [stderr]     Checking num-traits v0.2.15
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]     Checking regex v1.7.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking num-complex v0.4.3
[INFO] [stderr]     Checking num-integer v0.1.45
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.4.0
[INFO] [stderr]     Checking petgraph v0.6.2
[INFO] [stderr]     Checking num-rational v0.4.1
[INFO] [stderr]    Compiling phf_generator v0.10.0
[INFO] [stderr]    Compiling string_cache_codegen v0.5.2
[INFO] [stderr]     Checking parking_lot v0.12.1
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]    Compiling gb-io v0.7.1
[INFO] [stderr]     Checking is-terminal v0.4.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]    Compiling serde_derive v1.0.152
[INFO] [stderr]    Compiling thiserror-impl v1.0.38
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling clap_derive v4.0.21
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking thiserror v1.0.38
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking clap v4.0.29
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking serde_bytes v0.11.8
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking string_cache v0.8.4
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.1.0
[INFO] [stderr]     Checking bio-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> src/hw/hw8.rs:135:48
[INFO] [stdout]     |
[INFO] [stdout] 135 |     let values: Vec<f64> = (0..states).map(|i| (start_probs[i] + emission_probs[i][&first_c])).collect();
[INFO] [stdout]     |                                                ^                                            ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 135 -     let values: Vec<f64> = (0..states).map(|i| (start_probs[i] + emission_probs[i][&first_c])).collect();
[INFO] [stdout] 135 +     let values: Vec<f64> = (0..states).map(|i| start_probs[i] + emission_probs[i][&first_c] ).collect();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> src/hw/hw8.rs:135:48
[INFO] [stdout]     |
[INFO] [stdout] 135 |     let values: Vec<f64> = (0..states).map(|i| (start_probs[i] + emission_probs[i][&first_c])).collect();
[INFO] [stdout]     |                                                ^                                            ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 135 -     let values: Vec<f64> = (0..states).map(|i| (start_probs[i] + emission_probs[i][&first_c])).collect();
[INFO] [stdout] 135 +     let values: Vec<f64> = (0..states).map(|i| start_probs[i] + emission_probs[i][&first_c] ).collect();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/hw/hw1.rs:152:36
[INFO] [stdout]     |
[INFO] [stdout] 152 | fn build_suffix_array(strings: Vec<&str>) -> Vec<SuffixPointer> {
[INFO] [stdout]     |                                    ^^^^          ^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                                    |
[INFO] [stdout]     |                                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 152 | fn build_suffix_array(strings: Vec<&str>) -> Vec<SuffixPointer<'_>> {
[INFO] [stdout]     |                                                               ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> src/hw/hw1.rs:152:36
[INFO] [stdout]     |
[INFO] [stdout] 152 | fn build_suffix_array(strings: Vec<&str>) -> Vec<SuffixPointer> {
[INFO] [stdout]     |                                    ^^^^          ^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                                    |
[INFO] [stdout]     |                                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 152 | fn build_suffix_array(strings: Vec<&str>) -> Vec<SuffixPointer<'_>> {
[INFO] [stdout]     |                                                               ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 36.80s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nom v4.2.3
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "fc49d742cb95cdb58c9eca8cbdb1fa6945c761a10fa7e6e5c82b8555aab6fab6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fc49d742cb95cdb58c9eca8cbdb1fa6945c761a10fa7e6e5c82b8555aab6fab6", kill_on_drop: false }`
[INFO] [stdout] fc49d742cb95cdb58c9eca8cbdb1fa6945c761a10fa7e6e5c82b8555aab6fab6
