[INFO] cloning repository https://github.com/kgori/gentools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/kgori/gentools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Fgentools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Fgentools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e0a83eec1f1d35bb11ccb0f152e855719c7a40f5
[INFO] checking kgori/gentools against 1.95.0 for pr-155915
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Fgentools" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/kgori/gentools
[INFO] finished tweaking git repo https://github.com/kgori/gentools
[INFO] tweaked toml for git repo https://github.com/kgori/gentools written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/kgori/gentools on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/kgori/gentools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr]   |
[INFO] [stderr]   = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr]   = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr]   = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded quote v1.0.17
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded bytecount v0.6.2
[INFO] [stderr]   Downloaded clap_derive v4.0.21
[INFO] [stderr]   Downloaded clap_derive v3.1.4
[INFO] [stderr]   Downloaded bio-types v0.12.1
[INFO] [stderr]   Downloaded io-lifetimes v1.0.3
[INFO] [stderr]   Downloaded anyhow v1.0.56
[INFO] [stderr]   Downloaded rust-htslib v0.40.2
[INFO] [stderr]   Downloaded rust-htslib v0.38.2
[INFO] [stderr]   Downloaded syn v1.0.90
[INFO] [stderr]   Downloaded clap v4.0.32
[INFO] [stderr]   Downloaded bio v0.40.0
[INFO] [stderr]   Downloaded regex v1.5.5
[INFO] [stderr]   Downloaded clap v3.1.6
[INFO] [stderr]   Downloaded ndarray v0.15.4
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] [stderr]   Downloaded libz-sys v1.1.5
[INFO] [stderr]   Downloaded curl-sys v0.4.53+curl-7.82.0
[INFO] [stderr]   Downloaded openssl-src v111.18.0+1.1.1n
[INFO] [stderr]   Downloaded hts-sys v2.0.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 45ad334bdc60d5be882c9b8b1910fdf117731bbe777edfb1a80dec96e780acf4
[INFO] running `Command { std: "docker" "start" "-a" "45ad334bdc60d5be882c9b8b1910fdf117731bbe777edfb1a80dec96e780acf4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "45ad334bdc60d5be882c9b8b1910fdf117731bbe777edfb1a80dec96e780acf4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "45ad334bdc60d5be882c9b8b1910fdf117731bbe777edfb1a80dec96e780acf4", kill_on_drop: false }`
[INFO] [stdout] 45ad334bdc60d5be882c9b8b1910fdf117731bbe777edfb1a80dec96e780acf4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b946ca2193b7468d6b7d8a15b374006e1a6a6e86fff4232c549eee3c68465df6
[INFO] running `Command { std: "docker" "start" "-a" "b946ca2193b7468d6b7d8a15b374006e1a6a6e86fff4232c549eee3c68465df6", kill_on_drop: false }`
[INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"`
[INFO] [stderr]   |
[INFO] [stderr]   = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest
[INFO] [stderr]   = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest
[INFO] [stderr]   = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling proc-macro2 v1.0.49
[INFO] [stderr]    Compiling syn v1.0.90
[INFO] [stderr]    Compiling pkg-config v0.3.25
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking tinyvec v1.5.1
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking unicode-bidi v0.3.7
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking os_str_bytes v6.0.0
[INFO] [stderr]    Compiling indexmap v1.8.1
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling io-lifetimes v1.0.3
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]    Compiling paste v1.0.7
[INFO] [stderr]    Compiling rustix v0.36.6
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]    Compiling anyhow v1.0.56
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling quote v1.0.17
[INFO] [stderr]     Checking linux-raw-sys v0.1.4
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking fixedbitset v0.4.1
[INFO] [stderr]     Checking ryu v1.0.9
[INFO] [stderr]     Checking itertools v0.10.3
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking clap_lex v0.3.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]     Checking once_cell v1.17.0
[INFO] [stderr]     Checking getrandom v0.2.6
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking strum v0.23.0
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking textwrap v0.15.0
[INFO] [stderr]     Checking regex v1.5.5
[INFO] [stderr]     Checking petgraph v0.6.0
[INFO] [stderr]     Checking ndarray v0.15.4
[INFO] [stderr]    Compiling openssl-src v111.18.0+1.1.1n
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking unicode-normalization v0.1.19
[INFO] [stderr]     Checking num_cpus v1.15.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling openssl-sys v0.9.72
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.53+curl-7.82.0
[INFO] [stderr]    Compiling hts-sys v2.0.3
[INFO] [stderr]    Compiling libz-sys v1.1.5
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking idna v0.2.3
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]     Checking is-terminal v0.4.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]    Compiling clap_derive v3.1.4
[INFO] [stderr]    Compiling clap_derive v4.0.21
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking thiserror v1.0.30
[INFO] [stderr]     Checking bio-types v0.12.1
[INFO] [stderr]     Checking clap v3.1.6
[INFO] [stderr]     Checking clap v4.0.32
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking bio v0.40.0
[INFO] [stderr]     Checking rust-htslib v0.40.2
[INFO] [stderr]     Checking rust-htslib v0.38.2
[INFO] [stderr]     Checking extract_unaligned v0.1.0 (/opt/rustwide/workdir/tools/extract_unaligned)
[INFO] [stderr]     Checking window_counter v0.1.0 (/opt/rustwide/workdir/tools/window_counter)
[INFO] [stdout] warning: method `print` is never used
[INFO] [stdout]   --> tools/window_counter/src/main.rs:27:8
[INFO] [stdout]    |
[INFO] [stdout] 17 | impl Region {
[INFO] [stdout]    | ----------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 27 |     fn print(&self) {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `print` is never used
[INFO] [stdout]   --> tools/window_counter/src/main.rs:27:8
[INFO] [stdout]    |
[INFO] [stdout] 17 | impl Region {
[INFO] [stdout]    | ----------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 27 |     fn print(&self) {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 31s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 6`
[INFO] running `Command { std: "docker" "inspect" "b946ca2193b7468d6b7d8a15b374006e1a6a6e86fff4232c549eee3c68465df6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b946ca2193b7468d6b7d8a15b374006e1a6a6e86fff4232c549eee3c68465df6", kill_on_drop: false }`
[INFO] [stdout] b946ca2193b7468d6b7d8a15b374006e1a6a6e86fff4232c549eee3c68465df6
