[INFO] cloning repository https://github.com/frubino/pnps-utils
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/frubino/pnps-utils" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffrubino%2Fpnps-utils", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffrubino%2Fpnps-utils'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6109bf6b7227095d5ad4f4dfa5f4bbf444a556e7
[INFO] checking frubino/pnps-utils against 1.95.0 for pr-155915
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffrubino%2Fpnps-utils" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/frubino/pnps-utils
[INFO] finished tweaking git repo https://github.com/frubino/pnps-utils
[INFO] tweaked toml for git repo https://github.com/frubino/pnps-utils written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/frubino/pnps-utils on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/frubino/pnps-utils already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/frubino/bio-rascal.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded hermit-abi v0.3.0
[INFO] [stderr]   Downloaded uuid-macro-internal v1.3.0
[INFO] [stderr]   Downloaded clap_complete v4.1.1
[INFO] [stderr]   Downloaded is-terminal v0.4.3
[INFO] [stderr]   Downloaded portable-atomic v0.3.19
[INFO] [stderr]   Downloaded indicatif v0.17.3
[INFO] [stderr]   Downloaded serde_json v1.0.92
[INFO] [stderr]   Downloaded clap v4.1.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0c92f8e569b074ea330481b349fa9278ed38f5c7a95b36856dcbe8fd6c378428
[INFO] running `Command { std: "docker" "start" "-a" "0c92f8e569b074ea330481b349fa9278ed38f5c7a95b36856dcbe8fd6c378428", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0c92f8e569b074ea330481b349fa9278ed38f5c7a95b36856dcbe8fd6c378428", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0c92f8e569b074ea330481b349fa9278ed38f5c7a95b36856dcbe8fd6c378428", kill_on_drop: false }`
[INFO] [stdout] 0c92f8e569b074ea330481b349fa9278ed38f5c7a95b36856dcbe8fd6c378428
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9d4952fb387ca2537e1c88ad687e63db1ed8c67ae397f4b095610d0eb8dc4c61
[INFO] running `Command { std: "docker" "start" "-a" "9d4952fb387ca2537e1c88ad687e63db1ed8c67ae397f4b095610d0eb8dc4c61", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.51
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling serde_derive v1.0.152
[INFO] [stderr]    Compiling serde v1.0.152
[INFO] [stderr]    Compiling io-lifetimes v1.0.5
[INFO] [stderr]    Compiling rustix v0.36.8
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling phf_shared v0.11.1
[INFO] [stderr]    Compiling anyhow v1.0.69
[INFO] [stderr]     Checking siphasher v0.3.10
[INFO] [stderr]    Compiling serde_json v1.0.92
[INFO] [stderr]    Compiling portable-atomic v0.3.19
[INFO] [stderr]     Checking clap_lex v0.3.1
[INFO] [stderr]     Checking miniz_oxide v0.6.2
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]     Checking regex-syntax v0.6.28
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking urlencoding v2.1.2
[INFO] [stderr]    Compiling phf_generator v0.11.1
[INFO] [stderr]     Checking flate2 v1.0.25
[INFO] [stderr]    Compiling quote v1.0.23
[INFO] [stderr]    Compiling syn v1.0.107
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking regex v1.7.1
[INFO] [stderr]     Checking getrandom v0.2.8
[INFO] [stderr]     Checking console v0.15.5
[INFO] [stderr]     Checking indicatif v0.17.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking is-terminal v0.4.3
[INFO] [stderr]     Checking env_logger v0.10.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling clap_derive v4.1.0
[INFO] [stderr]    Compiling phf_macros v0.11.1
[INFO] [stderr]    Compiling uuid-macro-internal v1.3.0
[INFO] [stderr]     Checking phf v0.11.1
[INFO] [stderr]     Checking clap v4.1.4
[INFO] [stderr]     Checking clap_complete v4.1.1
[INFO] [stderr]     Checking time v0.3.17
[INFO] [stderr]     Checking uuid v1.3.0
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking bio_rascal v0.1.1 (https://github.com/frubino/bio-rascal.git?branch=dev-0.1.1#cebc10e3)
[INFO] [stderr]     Checking pnps-utils v0.1.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/parse.rs:219:37
[INFO] [stdout]     |
[INFO] [stdout] 219 |                         if let Some(mut sample_pnps) = sample_pnps_map.get_mut(&a.uid) {
[INFO] [stdout]     |                                     ----^^^^^^^^^^^
[INFO] [stdout]     |                                     |
[INFO] [stdout]     |                                     help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `file_or_stdin` is never used
[INFO] [stdout]   --> src/utils.rs:31:8
[INFO] [stdout]    |
[INFO] [stdout] 31 | pub fn file_or_stdin<P: AsRef<Path>>(input_file: &Option<P>) -> Result<Box<dyn Read>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/parse.rs:219:37
[INFO] [stdout]     |
[INFO] [stdout] 219 |                         if let Some(mut sample_pnps) = sample_pnps_map.get_mut(&a.uid) {
[INFO] [stdout]     |                                     ----^^^^^^^^^^^
[INFO] [stdout]     |                                     |
[INFO] [stdout]     |                                     help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `file_or_stdin` is never used
[INFO] [stdout]   --> src/utils.rs:31:8
[INFO] [stdout]    |
[INFO] [stdout] 31 | pub fn file_or_stdin<P: AsRef<Path>>(input_file: &Option<P>) -> Result<Box<dyn Read>> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.78s
[INFO] running `Command { std: "docker" "inspect" "9d4952fb387ca2537e1c88ad687e63db1ed8c67ae397f4b095610d0eb8dc4c61", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9d4952fb387ca2537e1c88ad687e63db1ed8c67ae397f4b095610d0eb8dc4c61", kill_on_drop: false }`
[INFO] [stdout] 9d4952fb387ca2537e1c88ad687e63db1ed8c67ae397f4b095610d0eb8dc4c61
