[INFO] cloning repository https://github.com/clinico-omics/preqc-pack
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clinico-omics/preqc-pack" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 96f423d5c14ff72193b09d0de4711f0ab48de373
[INFO] checking clinico-omics/preqc-pack against 1.95.0 for pr-155915
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/clinico-omics/preqc-pack
[INFO] finished tweaking git repo https://github.com/clinico-omics/preqc-pack
[INFO] tweaked toml for git repo https://github.com/clinico-omics/preqc-pack written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/clinico-omics/preqc-pack on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/clinico-omics/preqc-pack already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/yjcyxky/rust-bwa`
[INFO] [stderr]     Updating git submodule `https://github.com/10XGenomics/bwa.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ad8652326cb4e674aae7a5214ce0b45ec44cb19787a55c505fef720d269aa596
[INFO] running `Command { std: "docker" "start" "-a" "ad8652326cb4e674aae7a5214ce0b45ec44cb19787a55c505fef720d269aa596", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ad8652326cb4e674aae7a5214ce0b45ec44cb19787a55c505fef720d269aa596", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ad8652326cb4e674aae7a5214ce0b45ec44cb19787a55c505fef720d269aa596", kill_on_drop: false }`
[INFO] [stdout] ad8652326cb4e674aae7a5214ce0b45ec44cb19787a55c505fef720d269aa596
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c83afb6abd428a2dd8d918122f4e1684ac94131bcb7cf94abcdd9ce7c12e3875
[INFO] running `Command { std: "docker" "start" "-a" "c83afb6abd428a2dd8d918122f4e1684ac94131bcb7cf94abcdd9ce7c12e3875", kill_on_drop: false }`
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[INFO] [stderr]    Compiling bwa-sys v0.1.0 (https://github.com/yjcyxky/rust-bwa?rev=360ff84#360ff84c)
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]     Checking regex v1.6.0
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[INFO] [stderr]    Compiling proc-macro-error v1.0.4
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[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling futures-macro v0.3.24
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]     Checking structopt v0.3.26
[INFO] [stderr]     Checking futures-executor v0.3.24
[INFO] [stderr]     Checking futures v0.3.24
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking serde_bytes v0.11.7
[INFO] [stderr]     Checking lz4 v1.24.0
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[INFO] [stderr]     Checking fastq v0.6.0
[INFO] [stderr]     Checking rust-htslib v0.40.2
[INFO] [stderr]     Checking bwa v0.1.1 (https://github.com/yjcyxky/rust-bwa?rev=360ff84#360ff84c)
[INFO] [stderr]     Checking preqc-pack v0.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize`
[INFO] [stdout]  --> src/qc/util.rs:1:13
[INFO] [stdout]   |
[INFO] [stdout] 1 | use serde::{Deserialize, Serialize};
[INFO] [stdout]   |             ^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize`
[INFO] [stdout]  --> src/qc/util.rs:1:13
[INFO] [stdout]   |
[INFO] [stdout] 1 | use serde::{Deserialize, Serialize};
[INFO] [stdout]   |             ^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `g_count` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:866:27
[INFO] [stdout]     |
[INFO] [stdout] 866 |         let mut g_count = 0;
[INFO] [stdout]     |                           ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `a_count` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:867:27
[INFO] [stdout]     |
[INFO] [stdout] 867 |         let mut a_count = 0;
[INFO] [stdout]     |                           ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `t_count` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:868:27
[INFO] [stdout]     |
[INFO] [stdout] 868 |         let mut t_count = 0;
[INFO] [stdout]     |                           ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `c_count` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:869:27
[INFO] [stdout]     |
[INFO] [stdout] 869 |         let mut c_count = 0;
[INFO] [stdout]     |                           ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `total` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:870:25
[INFO] [stdout]     |
[INFO] [stdout] 870 |         let mut total = 0;
[INFO] [stdout]     |                         ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]     --> src/qc/fastqc.rs:1360:17
[INFO] [stdout]      |
[INFO] [stdout] 1360 |             for i in this_len..other_len {
[INFO] [stdout]      |                 ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `interval` is never read
[INFO] [stdout]     --> src/qc/fastqc.rs:1412:35
[INFO] [stdout]      |
[INFO] [stdout] 1412 |         let mut interval: usize = 1;
[INFO] [stdout]      |                                   ^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `g_count` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:866:27
[INFO] [stdout]     |
[INFO] [stdout] 866 |         let mut g_count = 0;
[INFO] [stdout]     |                           ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `a_count` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:867:27
[INFO] [stdout]     |
[INFO] [stdout] 867 |         let mut a_count = 0;
[INFO] [stdout]     |                           ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `t_count` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:868:27
[INFO] [stdout]     |
[INFO] [stdout] 868 |         let mut t_count = 0;
[INFO] [stdout]     |                           ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `c_count` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:869:27
[INFO] [stdout]     |
[INFO] [stdout] 869 |         let mut c_count = 0;
[INFO] [stdout]     |                           ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `total` is never read
[INFO] [stdout]    --> src/qc/fastqc.rs:870:25
[INFO] [stdout]     |
[INFO] [stdout] 870 |         let mut total = 0;
[INFO] [stdout]     |                         ^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/qc/fastqc.rs:2114:17
[INFO] [stdout]      |
[INFO] [stdout] 2114 |             let mut corrected_count = corrected_counts[dup_level];
[INFO] [stdout]      |                 ----^^^^^^^^^^^^^^^
[INFO] [stdout]      |                 |
[INFO] [stdout]      |                 help: remove this `mut`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `record`
[INFO] [stdout]     --> src/qc/fastqc.rs:2173:40
[INFO] [stdout]      |
[INFO] [stdout] 2173 |     pub fn process_sequence(&mut self, record: &impl Record) {
[INFO] [stdout]      |                                        ^^^^^^ help: if this is intentional, prefix it with an underscore: `_record`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `other`
[INFO] [stdout]     --> src/qc/fastqc.rs:2184:29
[INFO] [stdout]      |
[INFO] [stdout] 2184 |     pub fn merge(&mut self, other: &SeqDuplicationLevel) {
[INFO] [stdout]      |                             ^^^^^ help: if this is intentional, prefix it with an underscore: `_other`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]     --> src/qc/fastqc.rs:1360:17
[INFO] [stdout]      |
[INFO] [stdout] 1360 |             for i in this_len..other_len {
[INFO] [stdout]      |                 ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `interval` is never read
[INFO] [stdout]     --> src/qc/fastqc.rs:1412:35
[INFO] [stdout]      |
[INFO] [stdout] 1412 |         let mut interval: usize = 1;
[INFO] [stdout]      |                                   ^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `tile` is never read
[INFO] [stdout]     --> src/qc/fastqc.rs:2932:31
[INFO] [stdout]      |
[INFO] [stdout] 2932 |         let mut tile: usize = 0;
[INFO] [stdout]      |                               ^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/qc/fastqc.rs:2114:17
[INFO] [stdout]      |
[INFO] [stdout] 2114 |             let mut corrected_count = corrected_counts[dup_level];
[INFO] [stdout]      |                 ----^^^^^^^^^^^^^^^
[INFO] [stdout]      |                 |
[INFO] [stdout]      |                 help: remove this `mut`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `record`
[INFO] [stdout]     --> src/qc/fastqc.rs:2173:40
[INFO] [stdout]      |
[INFO] [stdout] 2173 |     pub fn process_sequence(&mut self, record: &impl Record) {
[INFO] [stdout]      |                                        ^^^^^^ help: if this is intentional, prefix it with an underscore: `_record`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `other`
[INFO] [stdout]     --> src/qc/fastqc.rs:2184:29
[INFO] [stdout]      |
[INFO] [stdout] 2184 |     pub fn merge(&mut self, other: &SeqDuplicationLevel) {
[INFO] [stdout]      |                             ^^^^^ help: if this is intentional, prefix it with an underscore: `_other`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/qc/fastqc.rs:3211:13
[INFO] [stdout]      |
[INFO] [stdout] 3211 |         let mut seq_duplication_level = *self
[INFO] [stdout]      |             ----^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `tile` is never read
[INFO] [stdout]     --> src/qc/fastqc.rs:2932:31
[INFO] [stdout]      |
[INFO] [stdout] 2932 |         let mut tile: usize = 0;
[INFO] [stdout]      |                               ^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/qc/fastqc.rs:3211:13
[INFO] [stdout]      |
[INFO] [stdout] 3211 |         let mut seq_duplication_level = *self
[INFO] [stdout]      |             ----^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple methods are never used
[INFO] [stdout]    --> src/qc/fastqc.rs:643:8
[INFO] [stdout]     |
[INFO] [stdout] 543 | impl BasicStats {
[INFO] [stdout]     | --------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 643 |     fn add_total_reads(&mut self, total_reads: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 647 |     fn add_total_bases(&mut self, total_bases: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 651 |     fn add_to_count(
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 666 |     fn set_lowest_char(&mut self, c: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 670 |     fn set_highest_char(&mut self, c: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 674 |     fn set_min_len(&mut self, seq_len: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 680 |     fn set_max_len(&mut self, seq_len: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `max_count` is never read
[INFO] [stdout]     --> src/qc/fastqc.rs:2027:5
[INFO] [stdout]      |
[INFO] [stdout] 2021 | pub struct SeqDuplicationLevel {
[INFO] [stdout]      |            ------------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 2027 |     max_count: f64,
[INFO] [stdout]      |     ^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `SeqDuplicationLevel` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `finish` is never used
[INFO] [stdout]     --> src/qc/fastqc.rs:2180:8
[INFO] [stdout]      |
[INFO] [stdout] 2032 | impl SeqDuplicationLevel {
[INFO] [stdout]      | ------------------------ method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 2180 |     fn finish(&mut self) {
[INFO] [stdout]      |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `length` is never read
[INFO] [stdout]   --> src/qc/mislabeling.rs:24:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | pub struct VAFMatrix {
[INFO] [stdout]    |            --------- field in this struct
[INFO] [stdout] 23 |     #[serde(skip_serializing)]
[INFO] [stdout] 24 |     length: usize,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `VAFMatrix` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: eliding a lifetime that's named elsewhere is confusing
[INFO] [stdout]     --> src/qc/fastqc.rs:1165:72
[INFO] [stdout]      |
[INFO] [stdout] 1165 |     fn truncate_sequence<'a>(&'a mut self, record: &'a impl Record) -> &[u8] {
[INFO] [stdout]      |                               --                    --                 ^^^^^ the same lifetime is elided here
[INFO] [stdout]      |                               |                     |
[INFO] [stdout]      |                               |                     the lifetime is named here
[INFO] [stdout]      |                               the lifetime is named here
[INFO] [stdout]      |
[INFO] [stdout]      = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]      = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: consistently use `'a`
[INFO] [stdout]      |
[INFO] [stdout] 1165 |     fn truncate_sequence<'a>(&'a mut self, record: &'a impl Record) -> &'a [u8] {
[INFO] [stdout]      |                                                                         ++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple methods are never used
[INFO] [stdout]    --> src/qc/fastqc.rs:643:8
[INFO] [stdout]     |
[INFO] [stdout] 543 | impl BasicStats {
[INFO] [stdout]     | --------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 643 |     fn add_total_reads(&mut self, total_reads: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 647 |     fn add_total_bases(&mut self, total_bases: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 651 |     fn add_to_count(
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 666 |     fn set_lowest_char(&mut self, c: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 670 |     fn set_highest_char(&mut self, c: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 674 |     fn set_min_len(&mut self, seq_len: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 680 |     fn set_max_len(&mut self, seq_len: usize) {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `max_count` is never read
[INFO] [stdout]     --> src/qc/fastqc.rs:2027:5
[INFO] [stdout]      |
[INFO] [stdout] 2021 | pub struct SeqDuplicationLevel {
[INFO] [stdout]      |            ------------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 2027 |     max_count: f64,
[INFO] [stdout]      |     ^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `SeqDuplicationLevel` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `finish` is never used
[INFO] [stdout]     --> src/qc/fastqc.rs:2180:8
[INFO] [stdout]      |
[INFO] [stdout] 2032 | impl SeqDuplicationLevel {
[INFO] [stdout]      | ------------------------ method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 2180 |     fn finish(&mut self) {
[INFO] [stdout]      |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `length` is never read
[INFO] [stdout]   --> src/qc/mislabeling.rs:24:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | pub struct VAFMatrix {
[INFO] [stdout]    |            --------- field in this struct
[INFO] [stdout] 23 |     #[serde(skip_serializing)]
[INFO] [stdout] 24 |     length: usize,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `VAFMatrix` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: eliding a lifetime that's named elsewhere is confusing
[INFO] [stdout]     --> src/qc/fastqc.rs:1165:72
[INFO] [stdout]      |
[INFO] [stdout] 1165 |     fn truncate_sequence<'a>(&'a mut self, record: &'a impl Record) -> &[u8] {
[INFO] [stdout]      |                               --                    --                 ^^^^^ the same lifetime is elided here
[INFO] [stdout]      |                               |                     |
[INFO] [stdout]      |                               |                     the lifetime is named here
[INFO] [stdout]      |                               the lifetime is named here
[INFO] [stdout]      |
[INFO] [stdout]      = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]      = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: consistently use `'a`
[INFO] [stdout]      |
[INFO] [stdout] 1165 |     fn truncate_sequence<'a>(&'a mut self, record: &'a impl Record) -> &'a [u8] {
[INFO] [stdout]      |                                                                         ++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `result`
[INFO] [stdout]  --> examples/test_bwa.rs:9:13
[INFO] [stdout]   |
[INFO] [stdout] 9 |         let result: Result<Vec<_>, Error> = parser.parallel_each(3, |record_sets| {
[INFO] [stdout]   |             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `test_basic_statistics` is never used
[INFO] [stdout]   --> examples/fastqc_parallel.rs:77:4
[INFO] [stdout]    |
[INFO] [stdout] 77 | fn test_basic_statistics() {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 44.25s
[INFO] running `Command { std: "docker" "inspect" "c83afb6abd428a2dd8d918122f4e1684ac94131bcb7cf94abcdd9ce7c12e3875", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c83afb6abd428a2dd8d918122f4e1684ac94131bcb7cf94abcdd9ce7c12e3875", kill_on_drop: false }`
[INFO] [stdout] c83afb6abd428a2dd8d918122f4e1684ac94131bcb7cf94abcdd9ce7c12e3875
