[INFO] cloning repository https://github.com/bluenote-1577/sce-aligner
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bluenote-1577/sce-aligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fsce-aligner", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fsce-aligner'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 626fc3bdaf20d8a570e63fdbd80e3eabe0baf698
[INFO] checking bluenote-1577/sce-aligner against 1.95.0 for pr-155915
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fsce-aligner" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/bluenote-1577/sce-aligner
[INFO] finished tweaking git repo https://github.com/bluenote-1577/sce-aligner
[INFO] tweaked toml for git repo https://github.com/bluenote-1577/sce-aligner written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/bluenote-1577/sce-aligner on toolchain 1.95.0
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/bluenote-1577/sce-aligner already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.95.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bytemuck v1.12.3
[INFO] [stderr]   Downloaded proc-macro2 v1.0.48
[INFO] [stderr]   Downloaded wyhash v0.5.0
[INFO] [stderr]   Downloaded paste v1.0.11
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded quote v1.0.22
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded simple-logging v2.0.2
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded boomphf v0.5.9
[INFO] [stderr]   Downloaded num_cpus v1.14.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded getset v0.1.2
[INFO] [stderr]   Downloaded trilean v1.1.0
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded bytecount v0.6.3
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded thread-id v3.3.0
[INFO] [stderr]   Downloaded gcollections v1.5.0
[INFO] [stderr]   Downloaded buf_redux v0.8.4
[INFO] [stderr]   Downloaded num-complex v0.4.2
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded rustversion v1.0.11
[INFO] [stderr]   Downloaded ordered-float v3.4.0
[INFO] [stderr]   Downloaded bit-vec v0.5.1
[INFO] [stderr]   Downloaded wide v0.7.5
[INFO] [stderr]   Downloaded anyhow v1.0.67
[INFO] [stderr]   Downloaded libwfa v0.1.2
[INFO] [stderr]   Downloaded rayon-core v1.10.1
[INFO] [stderr]   Downloaded serde v1.0.151
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded serde_json v1.0.90
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded petgraph v0.6.2
[INFO] [stderr]   Downloaded bio v1.1.0
[INFO] [stderr]   Downloaded rayon v1.6.1
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded syn v1.0.106
[INFO] [stderr]   Downloaded bzip2 v0.4.3
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.13
[INFO] [stderr]   Downloaded rust-lapper v1.1.0
[INFO] [stderr]   Downloaded serde_derive v1.0.151
[INFO] [stderr]   Downloaded debruijn v0.3.4
[INFO] [stderr]   Downloaded needletail v0.4.1
[INFO] [stderr]   Downloaded partitions v0.2.4
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.14
[INFO] [stderr]   Downloaded intervallum v1.4.0
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d69eae433f1fe453ebdabe454e1b00ab7f5a2f5648fad452e0a3fb662b56930a
[INFO] running `Command { std: "docker" "start" "-a" "d69eae433f1fe453ebdabe454e1b00ab7f5a2f5648fad452e0a3fb662b56930a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d69eae433f1fe453ebdabe454e1b00ab7f5a2f5648fad452e0a3fb662b56930a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d69eae433f1fe453ebdabe454e1b00ab7f5a2f5648fad452e0a3fb662b56930a", kill_on_drop: false }`
[INFO] [stdout] d69eae433f1fe453ebdabe454e1b00ab7f5a2f5648fad452e0a3fb662b56930a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+1.95.0" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 39472609706dde41fa9ed633c7d1b092e5be167311bca0b44f417b729873de5c
[INFO] running `Command { std: "docker" "start" "-a" "39472609706dde41fa9ed633c7d1b092e5be167311bca0b44f417b729873de5c", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.138
[INFO] [stderr]    Compiling proc-macro2 v1.0.48
[INFO] [stderr]    Compiling quote v1.0.22
[INFO] [stderr]    Compiling unicode-ident v1.0.6
[INFO] [stderr]    Compiling syn v1.0.106
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling cc v1.0.78
[INFO] [stderr]    Compiling serde_derive v1.0.151
[INFO] [stderr]    Compiling serde v1.0.151
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.14
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling memoffset v0.7.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.13
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]     Checking ppv-lite86 v0.2.17
[INFO] [stderr]     Checking bytemuck v1.12.3
[INFO] [stderr]    Compiling rayon-core v1.10.1
[INFO] [stderr]     Checking either v1.8.0
[INFO] [stderr]    Compiling paste v1.0.11
[INFO] [stderr]    Compiling unicode-width v0.1.10
[INFO] [stderr]    Compiling regex-syntax v0.6.28
[INFO] [stderr]     Checking safe_arch v0.6.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling rustversion v1.0.11
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling aho-corasick v0.7.20
[INFO] [stderr]     Checking crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking getrandom v0.2.8
[INFO] [stderr]     Checking num_cpus v1.14.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.2
[INFO] [stderr]     Checking wide v0.7.5
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling typenum v1.16.0
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking ryu v1.0.12
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling thiserror v1.0.38
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling clang-sys v0.29.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]    Compiling serde_json v1.0.90
[INFO] [stderr]     Checking num-complex v0.4.2
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking rayon v1.6.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling anyhow v1.0.67
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking miniz_oxide v0.6.2
[INFO] [stderr]     Checking wyhash v0.5.0
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking itoa v1.0.5
[INFO] [stderr]     Checking os_str_bytes v6.4.1
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking trilean v1.1.0
[INFO] [stderr]     Checking safemem v0.3.3
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]     Checking buf_redux v0.8.4
[INFO] [stderr]     Checking gcollections v1.5.0
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking flate2 v1.0.25
[INFO] [stderr]     Checking petgraph v0.6.2
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.4.0
[INFO] [stderr]     Checking thread-id v3.3.0
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking textwrap v0.16.0
[INFO] [stderr]     Checking simple-logging v2.0.2
[INFO] [stderr]    Compiling regex v1.7.0
[INFO] [stderr]     Checking intervallum v1.4.0
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]     Checking clap v3.2.23
[INFO] [stderr]     Checking partitions v0.2.4
[INFO] [stderr]     Checking rust-lapper v1.1.0
[INFO] [stderr]     Checking nohash-hasher v0.2.0
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling bindgen v0.53.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.38
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking bzip2 v0.4.3
[INFO] [stderr]     Checking needletail v0.4.1
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]    Compiling libwfa v0.1.2
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking smallvec v1.10.0
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking boomphf v0.5.9
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking debruijn v0.3.4
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.1.0
[INFO] [stderr]     Checking sce_aligner v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `fxhash::FxHashMap`
[INFO] [stdout]  --> src/file_io.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use fxhash::FxHashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/file_io.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufReader`, `BufWriter`, `Write`, and `self`
[INFO] [stdout]   --> src/file_io.rs:10:15
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::{self, BufReader, BufWriter, Write};
[INFO] [stdout]    |               ^^^^  ^^^^^^^^^  ^^^^^^^^^  ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::time::Instant`
[INFO] [stdout]  --> src/seeding.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::time::Instant;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Interval` and `Lapper`
[INFO] [stdout]  --> src/seeding.rs:6:19
[INFO] [stdout]   |
[INFO] [stdout] 6 | use rust_lapper::{Interval, Lapper};
[INFO] [stdout]   |                   ^^^^^^^^  ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `smallvec::SmallVec`
[INFO] [stdout]  --> src/seeding.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use smallvec::SmallVec;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `fxhash::FxHashMap`
[INFO] [stdout]  --> src/file_io.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use fxhash::FxHashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/file_io.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufReader`, `BufWriter`, `Write`, and `self`
[INFO] [stdout]   --> src/file_io.rs:10:15
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::{self, BufReader, BufWriter, Write};
[INFO] [stdout]    |               ^^^^  ^^^^^^^^^  ^^^^^^^^^  ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::time::Instant`
[INFO] [stdout]  --> src/seeding.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::time::Instant;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Interval` and `Lapper`
[INFO] [stdout]  --> src/seeding.rs:6:19
[INFO] [stdout]   |
[INFO] [stdout] 6 | use rust_lapper::{Interval, Lapper};
[INFO] [stdout]   |                   ^^^^^^^^  ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `smallvec::SmallVec`
[INFO] [stdout]  --> src/seeding.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use smallvec::SmallVec;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `SubCommand`
[INFO] [stdout]  --> src/main.rs:2:22
[INFO] [stdout]   |
[INFO] [stdout] 2 | use clap::{App, Arg, SubCommand};
[INFO] [stdout]   |                      ^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `fxhash::FxHashSet`
[INFO] [stdout]  --> src/main.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use fxhash::FxHashSet;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Write` and `self`
[INFO] [stdout]   --> src/main.rs:12:15
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::{self, BufReader, BufWriter, Write};
[INFO] [stdout]    |               ^^^^                        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/main.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/main.rs:81:22
[INFO] [stdout]    |
[INFO] [stdout] 81 |             .map(|x| (*x as usize))
[INFO] [stdout]    |                      ^           ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 81 -             .map(|x| (*x as usize))
[INFO] [stdout] 81 +             .map(|x| *x as usize )
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `SubCommand`
[INFO] [stdout]  --> src/main.rs:2:22
[INFO] [stdout]   |
[INFO] [stdout] 2 | use clap::{App, Arg, SubCommand};
[INFO] [stdout]   |                      ^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `fxhash::FxHashSet`
[INFO] [stdout]  --> src/main.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use fxhash::FxHashSet;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Write` and `self`
[INFO] [stdout]   --> src/main.rs:12:15
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::{self, BufReader, BufWriter, Write};
[INFO] [stdout]    |               ^^^^                        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/main.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/main.rs:81:22
[INFO] [stdout]    |
[INFO] [stdout] 81 |             .map(|x| (*x as usize))
[INFO] [stdout]    |                      ^           ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 81 -             .map(|x| (*x as usize))
[INFO] [stdout] 81 +             .map(|x| *x as usize )
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `print_all_debug`
[INFO] [stdout]   --> src/main.rs:57:9
[INFO] [stdout]    |
[INFO] [stdout] 57 |     let print_all_debug = false;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_print_all_debug`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `use_minimizers`
[INFO] [stdout]   --> src/main.rs:58:9
[INFO] [stdout]    |
[INFO] [stdout] 58 |     let use_minimizers = matches.is_present("minimizer");
[INFO] [stdout]    |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_use_minimizers`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `use_wfa`
[INFO] [stdout]   --> src/main.rs:59:9
[INFO] [stdout]    |
[INFO] [stdout] 59 |     let use_wfa = matches.is_present("wfa");
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_use_wfa`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `sketch`
[INFO] [stdout]   --> src/main.rs:60:9
[INFO] [stdout]    |
[INFO] [stdout] 60 |     let sketch = matches.is_present("sketch");
[INFO] [stdout]    |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_sketch`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `window`
[INFO] [stdout]   --> src/main.rs:98:9
[INFO] [stdout]    |
[INFO] [stdout] 98 |     let window = 2 * c - 1;
[INFO] [stdout]    |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_window`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `t`
[INFO] [stdout]   --> src/main.rs:99:9
[INFO] [stdout]    |
[INFO] [stdout] 99 |     let t = (k - s + 1) / 2 + 1;
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `range`
[INFO] [stdout]    --> src/main.rs:342:17
[INFO] [stdout]     |
[INFO] [stdout] 342 |             let range = best_chain[0].ref_pos - best_chain[best_chain.len() - 1].ref_pos;
[INFO] [stdout]     |                 ^^^^^ help: if this is intentional, prefix it with an underscore: `_range`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `alignment`
[INFO] [stdout]    --> src/main.rs:430:21
[INFO] [stdout]     |
[INFO] [stdout] 430 |                 let alignment = aligner.global(&ref_slice, query_slice);
[INFO] [stdout]     |                     ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `print_all_debug`
[INFO] [stdout]   --> src/main.rs:57:9
[INFO] [stdout]    |
[INFO] [stdout] 57 |     let print_all_debug = false;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_print_all_debug`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `use_minimizers`
[INFO] [stdout]   --> src/main.rs:58:9
[INFO] [stdout]    |
[INFO] [stdout] 58 |     let use_minimizers = matches.is_present("minimizer");
[INFO] [stdout]    |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_use_minimizers`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `use_wfa`
[INFO] [stdout]   --> src/main.rs:59:9
[INFO] [stdout]    |
[INFO] [stdout] 59 |     let use_wfa = matches.is_present("wfa");
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_use_wfa`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `sketch`
[INFO] [stdout]   --> src/main.rs:60:9
[INFO] [stdout]    |
[INFO] [stdout] 60 |     let sketch = matches.is_present("sketch");
[INFO] [stdout]    |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_sketch`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `window`
[INFO] [stdout]   --> src/main.rs:98:9
[INFO] [stdout]    |
[INFO] [stdout] 98 |     let window = 2 * c - 1;
[INFO] [stdout]    |         ^^^^^^ help: if this is intentional, prefix it with an underscore: `_window`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `t`
[INFO] [stdout]   --> src/main.rs:99:9
[INFO] [stdout]    |
[INFO] [stdout] 99 |     let t = (k - s + 1) / 2 + 1;
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `range`
[INFO] [stdout]    --> src/main.rs:342:17
[INFO] [stdout]     |
[INFO] [stdout] 342 |             let range = best_chain[0].ref_pos - best_chain[best_chain.len() - 1].ref_pos;
[INFO] [stdout]     |                 ^^^^^ help: if this is intentional, prefix it with an underscore: `_range`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `alignment`
[INFO] [stdout]    --> src/main.rs:430:21
[INFO] [stdout]     |
[INFO] [stdout] 430 |                 let alignment = aligner.global(&ref_slice, query_slice);
[INFO] [stdout]     |                     ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_alignment`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 58.65s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, nom v5.1.2, partitions v0.2.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "39472609706dde41fa9ed633c7d1b092e5be167311bca0b44f417b729873de5c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "39472609706dde41fa9ed633c7d1b092e5be167311bca0b44f417b729873de5c", kill_on_drop: false }`
[INFO] [stdout] 39472609706dde41fa9ed633c7d1b092e5be167311bca0b44f417b729873de5c
