[INFO] cloning repository https://github.com/MiguelAMeloM/rustnome
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MiguelAMeloM/rustnome" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMiguelAMeloM%2Frustnome", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMiguelAMeloM%2Frustnome'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 82286a1b94e122f3f7a4934fd09541af4dc13480
[INFO] testing MiguelAMeloM/rustnome against master#ec6f9a5b4413f74386267ef8efc93712c2ce6db6 for pr-155739
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMiguelAMeloM%2Frustnome" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/MiguelAMeloM/rustnome
[INFO] finished tweaking git repo https://github.com/MiguelAMeloM/rustnome
[INFO] tweaked toml for git repo https://github.com/MiguelAMeloM/rustnome written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/MiguelAMeloM/rustnome on toolchain ec6f9a5b4413f74386267ef8efc93712c2ce6db6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/MiguelAMeloM/rustnome already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9a6da094faeb23a0fae9f9d8bc31c4c261ff8e5cc3ab154eeacc44130571f9be
[INFO] running `Command { std: "docker" "start" "-a" "9a6da094faeb23a0fae9f9d8bc31c4c261ff8e5cc3ab154eeacc44130571f9be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9a6da094faeb23a0fae9f9d8bc31c4c261ff8e5cc3ab154eeacc44130571f9be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9a6da094faeb23a0fae9f9d8bc31c4c261ff8e5cc3ab154eeacc44130571f9be", kill_on_drop: false }`
[INFO] [stdout] 9a6da094faeb23a0fae9f9d8bc31c4c261ff8e5cc3ab154eeacc44130571f9be
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c481197e6938be08b14671e047f66b2e0cc3a8cc7bd1e15bc62d1c6d30497486
[INFO] running `Command { std: "docker" "start" "-a" "c481197e6938be08b14671e047f66b2e0cc3a8cc7bd1e15bc62d1c6d30497486", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustome v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.39s
[INFO] running `Command { std: "docker" "inspect" "c481197e6938be08b14671e047f66b2e0cc3a8cc7bd1e15bc62d1c6d30497486", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c481197e6938be08b14671e047f66b2e0cc3a8cc7bd1e15bc62d1c6d30497486", kill_on_drop: false }`
[INFO] [stdout] c481197e6938be08b14671e047f66b2e0cc3a8cc7bd1e15bc62d1c6d30497486
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 877d0bb4a5805f662ae946edc5d2395650cdcbc5910afe2a4eebac60b6d2dcc5
[INFO] running `Command { std: "docker" "start" "-a" "877d0bb4a5805f662ae946edc5d2395650cdcbc5910afe2a4eebac60b6d2dcc5", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustome v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.26s
[INFO] running `Command { std: "docker" "inspect" "877d0bb4a5805f662ae946edc5d2395650cdcbc5910afe2a4eebac60b6d2dcc5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "877d0bb4a5805f662ae946edc5d2395650cdcbc5910afe2a4eebac60b6d2dcc5", kill_on_drop: false }`
[INFO] [stdout] 877d0bb4a5805f662ae946edc5d2395650cdcbc5910afe2a4eebac60b6d2dcc5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 532cd33f7012064802ed16887d3ec7856e19b1aabe5878b795d41ebda435beb2
[INFO] running `Command { std: "docker" "start" "-a" "532cd33f7012064802ed16887d3ec7856e19b1aabe5878b795d41ebda435beb2", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.01s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rustome-f050c3fb9b85f41c)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests rustome
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/upgma/algorithm.rs - upgma::algorithm::create_tree (line 73) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/upgma/algorithm.rs - upgma::algorithm::create_tree (line 73) stdout ----
[INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope
[INFO] [stdout]   --> src/upgma/algorithm.rs:75:31
[INFO] [stdout]    |
[INFO] [stdout] 75 |     ("seq1".to_string(), vec![DNuc::A, DNuc::C, DNuc::G]),
[INFO] [stdout]    |                               ^^^^ use of undeclared type `DNuc`
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]    |
[INFO] [stdout] 73 + use rustome::sequences::DNuc;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope
[INFO] [stdout]   --> src/upgma/algorithm.rs:75:40
[INFO] [stdout]    |
[INFO] [stdout] 75 |     ("seq1".to_string(), vec![DNuc::A, DNuc::C, DNuc::G]),
[INFO] [stdout]    |                                        ^^^^ use of undeclared type `DNuc`
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]    |
[INFO] [stdout] 73 + use rustome::sequences::DNuc;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope
[INFO] [stdout]   --> src/upgma/algorithm.rs:75:49
[INFO] [stdout]    |
[INFO] [stdout] 75 |     ("seq1".to_string(), vec![DNuc::A, DNuc::C, DNuc::G]),
[INFO] [stdout]    |                                                 ^^^^ use of undeclared type `DNuc`
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]    |
[INFO] [stdout] 73 + use rustome::sequences::DNuc;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope
[INFO] [stdout]   --> src/upgma/algorithm.rs:76:31
[INFO] [stdout]    |
[INFO] [stdout] 76 |     ("seq2".to_string(), vec![DNuc::A, DNuc::G, DNuc::G]),
[INFO] [stdout]    |                               ^^^^ use of undeclared type `DNuc`
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]    |
[INFO] [stdout] 73 + use rustome::sequences::DNuc;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope
[INFO] [stdout]   --> src/upgma/algorithm.rs:76:40
[INFO] [stdout]    |
[INFO] [stdout] 76 |     ("seq2".to_string(), vec![DNuc::A, DNuc::G, DNuc::G]),
[INFO] [stdout]    |                                        ^^^^ use of undeclared type `DNuc`
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]    |
[INFO] [stdout] 73 + use rustome::sequences::DNuc;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find type `DNuc` in this scope
[INFO] [stdout]   --> src/upgma/algorithm.rs:76:49
[INFO] [stdout]    |
[INFO] [stdout] 76 |     ("seq2".to_string(), vec![DNuc::A, DNuc::G, DNuc::G]),
[INFO] [stdout]    |                                                 ^^^^ use of undeclared type `DNuc`
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this enum
[INFO] [stdout]    |
[INFO] [stdout] 73 + use rustome::sequences::DNuc;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find type `Scoring` in this scope
[INFO] [stdout]   --> src/upgma/algorithm.rs:78:15
[INFO] [stdout]    |
[INFO] [stdout] 78 | let scoring = Scoring::default();
[INFO] [stdout]    |               ^^^^^^^ use of undeclared type `Scoring`
[INFO] [stdout]    |
[INFO] [stdout] help: a struct with a similar name exists
[INFO] [stdout]    |
[INFO] [stdout] 78 - let scoring = Scoring::default();
[INFO] [stdout] 78 + let scoring = String::default();
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this struct
[INFO] [stdout]    |
[INFO] [stdout] 73 + use rustome::alignment::Scoring;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `create_tree` in this scope
[INFO] [stdout]   --> src/upgma/algorithm.rs:79:12
[INFO] [stdout]    |
[INFO] [stdout] 79 | let tree = create_tree(sequences, scoring);
[INFO] [stdout]    |            ^^^^^^^^^^^ not found in this scope
[INFO] [stdout]    |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]    |
[INFO] [stdout] 73 + use rustome::upgma::algorithm::create_tree;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 8 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0433.
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/upgma/algorithm.rs - upgma::algorithm::create_tree (line 73)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stdout] all doctests ran in 0.17s; merged doctests compilation took 0.09s
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "532cd33f7012064802ed16887d3ec7856e19b1aabe5878b795d41ebda435beb2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "532cd33f7012064802ed16887d3ec7856e19b1aabe5878b795d41ebda435beb2", kill_on_drop: false }`
[INFO] [stdout] 532cd33f7012064802ed16887d3ec7856e19b1aabe5878b795d41ebda435beb2
