[INFO] cloning repository https://github.com/IMTMarburg/mbf_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/IMTMarburg/mbf_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 906a4ccff4ac21ca2ed097e42c89b1df983bae0e
[INFO] testing IMTMarburg/mbf_bam against master#ec6f9a5b4413f74386267ef8efc93712c2ce6db6 for pr-155739
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/IMTMarburg/mbf_bam
[INFO] finished tweaking git repo https://github.com/IMTMarburg/mbf_bam
[INFO] tweaked toml for git repo https://github.com/IMTMarburg/mbf_bam written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/IMTMarburg/mbf_bam on toolchain ec6f9a5b4413f74386267ef8efc93712c2ce6db6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/IMTMarburg/mbf_bam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ca3e33aaaaa14c179b091cf76be7f4a10474d6f57618f41ecc519475e7f0bc06
[INFO] running `Command { std: "docker" "start" "-a" "ca3e33aaaaa14c179b091cf76be7f4a10474d6f57618f41ecc519475e7f0bc06", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ca3e33aaaaa14c179b091cf76be7f4a10474d6f57618f41ecc519475e7f0bc06", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ca3e33aaaaa14c179b091cf76be7f4a10474d6f57618f41ecc519475e7f0bc06", kill_on_drop: false }`
[INFO] [stdout] ca3e33aaaaa14c179b091cf76be7f4a10474d6f57618f41ecc519475e7f0bc06
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0f092ece5788aacbcf07e26a1475e93779b76f807df8c4fc391f7d15f7413445
[INFO] running `Command { std: "docker" "start" "-a" "0f092ece5788aacbcf07e26a1475e93779b76f807df8c4fc391f7d15f7413445", kill_on_drop: false }`
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[INFO] [stderr]    Compiling bio v2.0.3
[INFO] [stderr]    Compiling rust-htslib v0.46.0
[INFO] [stderr]    Compiling mbf_bam v0.6.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/count_reads/by_barcode.rs:95:25
[INFO] [stdout]    |
[INFO] [stdout] 95 |     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stdout]    |                         ^             ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 95 -     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stdout] 95 +     flat.sort_by(|a, b| a.1.cmp(&b.1));
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/lib.rs:20:17
[INFO] [stdout]    |
[INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stdout]    |                 ^---
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Fail` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_DERIVE_failure_Fail_FOR_BamError`
[INFO] [stdout] 21 | pub enum BamError {
[INFO] [stdout]    |          -------- `BamError` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/lib.rs:20:17
[INFO] [stdout]    |
[INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stdout]    |                 ^---
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Display` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_DERIVE_failure_core_fmt_Display_FOR_BamError`
[INFO] [stdout] 21 | pub enum BamError {
[INFO] [stdout]    |          -------- `BamError` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/count_reads/chunked_genome.rs:45:17
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator {
[INFO] [stdout]    |                 ^^^^^     ^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator<'_> {
[INFO] [stdout]    |                                                ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 8m 10s
[INFO] running `Command { std: "docker" "inspect" "0f092ece5788aacbcf07e26a1475e93779b76f807df8c4fc391f7d15f7413445", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0f092ece5788aacbcf07e26a1475e93779b76f807df8c4fc391f7d15f7413445", kill_on_drop: false }`
[INFO] [stdout] 0f092ece5788aacbcf07e26a1475e93779b76f807df8c4fc391f7d15f7413445
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 19860a2b31dd3171d0796d966b6282eca2f5727e88ee3324c2764bf9eb0de0e8
[INFO] running `Command { std: "docker" "start" "-a" "19860a2b31dd3171d0796d966b6282eca2f5727e88ee3324c2764bf9eb0de0e8", kill_on_drop: false }`
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling rustix v0.38.37
[INFO] [stderr]    Compiling linux-raw-sys v0.4.14
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling fastrand v2.1.1
[INFO] [stderr]    Compiling pyo3-build-config v0.20.3
[INFO] [stderr]    Compiling pyo3-macros-backend v0.20.3
[INFO] [stderr]    Compiling pyo3-ffi v0.20.3
[INFO] [stderr]    Compiling pyo3 v0.20.3
[INFO] [stderr]    Compiling tempfile v3.13.0
[INFO] [stderr]    Compiling pyo3-macros v0.20.3
[INFO] [stderr]    Compiling mbf_bam v0.6.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]   --> src/count_reads/by_barcode.rs:95:25
[INFO] [stdout]    |
[INFO] [stdout] 95 |     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stdout]    |                         ^             ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 95 -     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stdout] 95 +     flat.sort_by(|a, b| a.1.cmp(&b.1));
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/lib.rs:20:17
[INFO] [stdout]    |
[INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stdout]    |                 ^---
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Fail` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_DERIVE_failure_Fail_FOR_BamError`
[INFO] [stdout] 21 | pub enum BamError {
[INFO] [stdout]    |          -------- `BamError` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/lib.rs:20:17
[INFO] [stdout]    |
[INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stdout]    |                 ^---
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 `Display` is not local
[INFO] [stdout]    |                 move the `impl` block outside of this constant `_DERIVE_failure_core_fmt_Display_FOR_BamError`
[INFO] [stdout] 21 | pub enum BamError {
[INFO] [stdout]    |          -------- `BamError` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/count_reads/chunked_genome.rs:45:17
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator {
[INFO] [stdout]    |                 ^^^^^     ^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                 |
[INFO] [stdout]    |                 the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator<'_> {
[INFO] [stdout]    |                                                ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 33.42s
[INFO] running `Command { std: "docker" "inspect" "19860a2b31dd3171d0796d966b6282eca2f5727e88ee3324c2764bf9eb0de0e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "19860a2b31dd3171d0796d966b6282eca2f5727e88ee3324c2764bf9eb0de0e8", kill_on_drop: false }`
[INFO] [stdout] 19860a2b31dd3171d0796d966b6282eca2f5727e88ee3324c2764bf9eb0de0e8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] f2f3ae25d8382fbeb8daa223a76657e7792078811b6a64ccc025f0e653881502
[INFO] running `Command { std: "docker" "start" "-a" "f2f3ae25d8382fbeb8daa223a76657e7792078811b6a64ccc025f0e653881502", kill_on_drop: false }`
[INFO] [stderr] warning: unnecessary parentheses around closure body
[INFO] [stderr]   --> src/count_reads/by_barcode.rs:95:25
[INFO] [stderr]    |
[INFO] [stderr] 95 |     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stderr]    |                         ^             ^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 95 -     flat.sort_by(|a, b| (a.1.cmp(&b.1)));
[INFO] [stderr] 95 +     flat.sort_by(|a, b| a.1.cmp(&b.1));
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stderr]   --> src/lib.rs:20:17
[INFO] [stderr]    |
[INFO] [stderr] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stderr]    |                 ^---
[INFO] [stderr]    |                 |
[INFO] [stderr]    |                 `Fail` is not local
[INFO] [stderr]    |                 move the `impl` block outside of this constant `_DERIVE_failure_Fail_FOR_BamError`
[INFO] [stderr] 21 | pub enum BamError {
[INFO] [stderr]    |          -------- `BamError` is not local
[INFO] [stderr]    |
[INFO] [stderr]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stderr]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stderr]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stderr]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stderr]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stderr]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stderr]   --> src/lib.rs:20:17
[INFO] [stderr]    |
[INFO] [stderr] 20 | #[derive(Debug, Fail, Clone)]
[INFO] [stderr]    |                 ^---
[INFO] [stderr]    |                 |
[INFO] [stderr]    |                 `Display` is not local
[INFO] [stderr]    |                 move the `impl` block outside of this constant `_DERIVE_failure_core_fmt_Display_FOR_BamError`
[INFO] [stderr] 21 | pub enum BamError {
[INFO] [stderr]    |          -------- `BamError` is not local
[INFO] [stderr]    |
[INFO] [stderr]    = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed
[INFO] [stderr]    = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive`
[INFO] [stderr]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stderr]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stderr]    = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stderr]   --> src/count_reads/chunked_genome.rs:45:17
[INFO] [stderr]    |
[INFO] [stderr] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator {
[INFO] [stderr]    |                 ^^^^^     ^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stderr]    |                 |
[INFO] [stderr]    |                 the lifetime is elided here
[INFO] [stderr]    |
[INFO] [stderr]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stderr]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stderr] help: use `'_` for type paths
[INFO] [stderr]    |
[INFO] [stderr] 45 |     pub fn iter(&self) -> ChunkedGenomeIterator<'_> {
[INFO] [stderr]    |                                                ++++
[INFO] [stderr] 
[INFO] [stderr] warning: `mbf_bam` (lib test) generated 4 warnings (run `cargo fix --lib -p mbf_bam --tests` to apply 2 suggestions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.42s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mbf_bam-d4481f673c29a14e)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stderr] [E::hts_open_format] Failed to open file "test.bam" : Read-only file system
[INFO] [stdout] test bam_ext::tests::test_introns ... ok
[INFO] [stdout] test bam_manipulation::tests::test_filter_and_rename_none ... ok
[INFO] [stdout] test bam_ext::tests::spliced_reads ... ok
[INFO] [stdout] test bam_manipulation::tests::test_filter_and_rename_noop ... ok
[INFO] [stdout] test bam_manipulation::tests::test_filter_and_rename ... ok
[INFO] [stdout] test bam_manipulation::tests::test_filter_and_rename2 ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- bam_manipulation::tests::test_filter_and_rename2 stdout ----
[INFO] [stdout] [src/bam_manipulation.rs:172:5] &new_header.clone().to_hashmap() = {
[INFO] [stdout]     "RG": [
[INFO] [stdout]         {
[INFO] [stdout]             "ID": "L1",
[INFO] [stdout]             "PU": "SC_1_10",
[INFO] [stdout]             "LB": "SC_1",
[INFO] [stdout]             "SM": "NA12891",
[INFO] [stdout]             "CN": "name:with:colon",
[INFO] [stdout]         },
[INFO] [stdout]         {
[INFO] [stdout]             "ID": "L2",
[INFO] [stdout]             "PU": "SC_2_12",
[INFO] [stdout]             "LB": "SC_2",
[INFO] [stdout]             "SM": "NA12891",
[INFO] [stdout]             "CN": "name:with:colon",
[INFO] [stdout]         },
[INFO] [stdout]     ],
[INFO] [stdout]     "SQ": [
[INFO] [stdout]         {
[INFO] [stdout]             "SN": "2",
[INFO] [stdout]             "LN": "1584",
[INFO] [stdout]         },
[INFO] [stdout]     ],
[INFO] [stdout]     "PG": [
[INFO] [stdout]         {
[INFO] [stdout]             "ID": "P1",
[INFO] [stdout]             "VN": "1.0",
[INFO] [stdout]         },
[INFO] [stdout]         {
[INFO] [stdout]             "ID": "P2",
[INFO] [stdout]             "VN": "1.1",
[INFO] [stdout]         },
[INFO] [stdout]         {
[INFO] [stdout]             "ID": "mbf_bam.filter_and_rename_references",
[INFO] [stdout]         },
[INFO] [stdout]     ],
[INFO] [stdout]     "HD": [
[INFO] [stdout]         {
[INFO] [stdout]             "VN": "1.0",
[INFO] [stdout]         },
[INFO] [stdout]     ],
[INFO] [stdout] }
[INFO] [stdout] 
[INFO] [stdout] thread 'bam_manipulation::tests::test_filter_and_rename2' (21) panicked at src/bam_manipulation.rs:338:92:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: UnknownError { msg: "BamOpen { target: \"test.bam\" }" }
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x647c69bec08a - std[29689e6404d28ef9]::backtrace_rs::backtrace::libunwind::trace
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x647c69bec08a - std[29689e6404d28ef9]::backtrace_rs::backtrace::trace_unsynchronized::<std[29689e6404d28ef9]::sys::backtrace::_print_fmt::{closure#1}>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x647c69bec08a - std[29689e6404d28ef9]::sys::backtrace::_print_fmt
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/sys/backtrace.rs:74:9
[INFO] [stdout]    3:     0x647c69bec08a - <<std[29689e6404d28ef9]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[e929cb53b82a81ca]::fmt::Display>::fmt
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/sys/backtrace.rs:44:26
[INFO] [stdout]    4:     0x647c69c0165a - <core[e929cb53b82a81ca]::fmt::rt::Argument>::fmt
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x647c69c0165a - core[e929cb53b82a81ca]::fmt::write
[INFO] [stdout]    6:     0x647c69bf0a52 - std[29689e6404d28ef9]::io::default_write_fmt::<alloc[9d7caffeb3b5d2c6]::vec::Vec<u8>>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/io/mod.rs:621:11
[INFO] [stdout]    7:     0x647c69bf0a52 - <alloc[9d7caffeb3b5d2c6]::vec::Vec<u8> as std[29689e6404d28ef9]::io::Write>::write_fmt
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/io/mod.rs:1976:13
[INFO] [stdout]    8:     0x647c69bc9b3f - <std[29689e6404d28ef9]::sys::backtrace::BacktraceLock>::print
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/sys/backtrace.rs:47:9
[INFO] [stdout]    9:     0x647c69bc9b3f - std[29689e6404d28ef9]::panicking::default_hook::{closure#0}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x647c69be3eb9 - std[29689e6404d28ef9]::panicking::default_hook
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x647c694733cc - <alloc[9d7caffeb3b5d2c6]::boxed::Box<dyn for<'a, 'b> core[e929cb53b82a81ca]::ops::function::Fn<(&'a std[29689e6404d28ef9]::panic::PanicHookInfo<'b>,), Output = ()> + core[e929cb53b82a81ca]::marker::Send + core[e929cb53b82a81ca]::marker::Sync> as core[e929cb53b82a81ca]::ops::function::Fn<(&std[29689e6404d28ef9]::panic::PanicHookInfo,)>>::call
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/alloc/src/boxed.rs:2285:9
[INFO] [stdout]   12:     0x647c694733cc - test[a24b3028667022f7]::test_main_inner::<test[a24b3028667022f7]::test_main_static::{closure#0}>::{closure#0}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/test/src/lib.rs:155:21
[INFO] [stdout]   13:     0x647c69be4072 - <alloc[9d7caffeb3b5d2c6]::boxed::Box<dyn for<'a, 'b> core[e929cb53b82a81ca]::ops::function::Fn<(&'a std[29689e6404d28ef9]::panic::PanicHookInfo<'b>,), Output = ()> + core[e929cb53b82a81ca]::marker::Send + core[e929cb53b82a81ca]::marker::Sync> as core[e929cb53b82a81ca]::ops::function::Fn<(&std[29689e6404d28ef9]::panic::PanicHookInfo,)>>::call
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/alloc/src/boxed.rs:2285:9
[INFO] [stdout]   14:     0x647c69be4072 - std[29689e6404d28ef9]::panicking::panic_with_hook
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x647c69bc9bf8 - std[29689e6404d28ef9]::panicking::panic_handler::{closure#0}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:698:13
[INFO] [stdout]   16:     0x647c69bbecf9 - std[29689e6404d28ef9]::sys::backtrace::__rust_end_short_backtrace::<std[29689e6404d28ef9]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/sys/backtrace.rs:182:18
[INFO] [stdout]   17:     0x647c69bca90d - __rustc[3aed6af316653e63]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x647c69c01e9c - core[e929cb53b82a81ca]::panicking::panic_fmt
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x647c69c01c12 - core[e929cb53b82a81ca]::result::unwrap_failed
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/result.rs:1867:5
[INFO] [stdout]   20:     0x647c6943d6a5 - <core[e929cb53b82a81ca]::result::Result<(), mbf_bam[afec6892c14df707]::BamError>>::unwrap
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/result.rs:1233:23
[INFO] [stdout]   21:     0x647c6943d6a5 - mbf_bam[afec6892c14df707]::bam_manipulation::tests::test_filter_and_rename2
[INFO] [stdout]                                at /opt/rustwide/workdir/src/bam_manipulation.rs:338:92
[INFO] [stdout]   22:     0x647c6943bd17 - mbf_bam[afec6892c14df707]::bam_manipulation::tests::test_filter_and_rename2::{closure#0}
[INFO] [stdout]                                at /opt/rustwide/workdir/src/bam_manipulation.rs:324:33
[INFO] [stdout]   23:     0x647c6945a8a6 - <mbf_bam[afec6892c14df707]::bam_manipulation::tests::test_filter_and_rename2::{closure#0} as core[e929cb53b82a81ca]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x647c694666ab - <fn() -> core[e929cb53b82a81ca]::result::Result<(), alloc[9d7caffeb3b5d2c6]::string::String> as core[e929cb53b82a81ca]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x647c694666ab - test[a24b3028667022f7]::__rust_begin_short_backtrace::<core[e929cb53b82a81ca]::result::Result<(), alloc[9d7caffeb3b5d2c6]::string::String>, fn() -> core[e929cb53b82a81ca]::result::Result<(), alloc[9d7caffeb3b5d2c6]::string::String>>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/test/src/lib.rs:724:18
[INFO] [stdout]   26:     0x647c69473e9b - test[a24b3028667022f7]::run_test_in_process::{closure#0}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/test/src/lib.rs:747:74
[INFO] [stdout]   27:     0x647c69473e9b - <core[e929cb53b82a81ca]::panic::unwind_safe::AssertUnwindSafe<test[a24b3028667022f7]::run_test_in_process::{closure#0}> as core[e929cb53b82a81ca]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/panic/unwind_safe.rs:275:9
[INFO] [stdout]   28:     0x647c69473e9b - std[29689e6404d28ef9]::panicking::catch_unwind::do_call::<core[e929cb53b82a81ca]::panic::unwind_safe::AssertUnwindSafe<test[a24b3028667022f7]::run_test_in_process::{closure#0}>, core[e929cb53b82a81ca]::result::Result<(), alloc[9d7caffeb3b5d2c6]::string::String>>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:581:40
[INFO] [stdout]   29:     0x647c69473e9b - std[29689e6404d28ef9]::panicking::catch_unwind::<core[e929cb53b82a81ca]::result::Result<(), alloc[9d7caffeb3b5d2c6]::string::String>, core[e929cb53b82a81ca]::panic::unwind_safe::AssertUnwindSafe<test[a24b3028667022f7]::run_test_in_process::{closure#0}>>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:544:19
[INFO] [stdout]   30:     0x647c69473e9b - std[29689e6404d28ef9]::panic::catch_unwind::<core[e929cb53b82a81ca]::panic::unwind_safe::AssertUnwindSafe<test[a24b3028667022f7]::run_test_in_process::{closure#0}>, core[e929cb53b82a81ca]::result::Result<(), alloc[9d7caffeb3b5d2c6]::string::String>>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x647c69473e9b - test[a24b3028667022f7]::run_test_in_process
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/test/src/lib.rs:747:27
[INFO] [stdout]   32:     0x647c69473e9b - test[a24b3028667022f7]::run_test::{closure#0}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/test/src/lib.rs:668:43
[INFO] [stdout]   33:     0x647c6946d5b4 - test[a24b3028667022f7]::run_test::{closure#1}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/test/src/lib.rs:698:41
[INFO] [stdout]   34:     0x647c6946d5b4 - std[29689e6404d28ef9]::sys::backtrace::__rust_begin_short_backtrace::<test[a24b3028667022f7]::run_test::{closure#1}, ()>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/sys/backtrace.rs:166:18
[INFO] [stdout]   35:     0x647c69476aa2 - std[29689e6404d28ef9]::thread::lifecycle::spawn_unchecked::<test[a24b3028667022f7]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/thread/lifecycle.rs:70:13
[INFO] [stdout]   36:     0x647c69476aa2 - <core[e929cb53b82a81ca]::panic::unwind_safe::AssertUnwindSafe<std[29689e6404d28ef9]::thread::lifecycle::spawn_unchecked<test[a24b3028667022f7]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}> as core[e929cb53b82a81ca]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/panic/unwind_safe.rs:275:9
[INFO] [stdout]   37:     0x647c69476aa2 - std[29689e6404d28ef9]::panicking::catch_unwind::do_call::<core[e929cb53b82a81ca]::panic::unwind_safe::AssertUnwindSafe<std[29689e6404d28ef9]::thread::lifecycle::spawn_unchecked<test[a24b3028667022f7]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>, ()>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:581:40
[INFO] [stdout]   38:     0x647c69476aa2 - std[29689e6404d28ef9]::panicking::catch_unwind::<(), core[e929cb53b82a81ca]::panic::unwind_safe::AssertUnwindSafe<std[29689e6404d28ef9]::thread::lifecycle::spawn_unchecked<test[a24b3028667022f7]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panicking.rs:544:19
[INFO] [stdout]   39:     0x647c69476aa2 - std[29689e6404d28ef9]::panic::catch_unwind::<core[e929cb53b82a81ca]::panic::unwind_safe::AssertUnwindSafe<std[29689e6404d28ef9]::thread::lifecycle::spawn_unchecked<test[a24b3028667022f7]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>, ()>
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x647c69476aa2 - std[29689e6404d28ef9]::thread::lifecycle::spawn_unchecked::<test[a24b3028667022f7]::run_test::{closure#1}, ()>::{closure#1}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/thread/lifecycle.rs:68:26
[INFO] [stdout]   41:     0x647c69476aa2 - <std[29689e6404d28ef9]::thread::lifecycle::spawn_unchecked<test[a24b3028667022f7]::run_test::{closure#1}, ()>::{closure#1} as core[e929cb53b82a81ca]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x647c69beb99f - <alloc[9d7caffeb3b5d2c6]::boxed::Box<dyn core[e929cb53b82a81ca]::ops::function::FnOnce<(), Output = ()> + core[e929cb53b82a81ca]::marker::Send> as core[e929cb53b82a81ca]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/alloc/src/boxed.rs:2271:9
[INFO] [stdout]   43:     0x647c69beb99f - <std[29689e6404d28ef9]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]                                at /rustc/ec6f9a5b4413f74386267ef8efc93712c2ce6db6/library/std/src/sys/thread/unix.rs:118:17
[INFO] [stdout]   44:     0x7ed75e8e3aa4 - <unknown>
[INFO] [stdout]   45:     0x7ed75e970a64 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     bam_manipulation::tests::test_filter_and_rename2
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 5 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.22s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "f2f3ae25d8382fbeb8daa223a76657e7792078811b6a64ccc025f0e653881502", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f2f3ae25d8382fbeb8daa223a76657e7792078811b6a64ccc025f0e653881502", kill_on_drop: false }`
[INFO] [stdout] f2f3ae25d8382fbeb8daa223a76657e7792078811b6a64ccc025f0e653881502
