[INFO] cloning repository https://github.com/martinappberg/nnnBLAST
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/martinappberg/nnnBLAST" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmartinappberg%2FnnnBLAST", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmartinappberg%2FnnnBLAST'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 998175ada661aa5ed6e0065560bc53b006d2e867
[INFO] testing martinappberg/nnnBLAST against try#33835004928d3bf65db4d4712e1330766263b0bd for pr-155739
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmartinappberg%2FnnnBLAST" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/martinappberg/nnnBLAST
[INFO] finished tweaking git repo https://github.com/martinappberg/nnnBLAST
[INFO] tweaked toml for git repo https://github.com/martinappberg/nnnBLAST written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/martinappberg/nnnBLAST on toolchain 33835004928d3bf65db4d4712e1330766263b0bd
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+33835004928d3bf65db4d4712e1330766263b0bd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/martinappberg/nnnBLAST already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+33835004928d3bf65db4d4712e1330766263b0bd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
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[INFO] [stdout] f6252a0e1073a9a347f849173bea8462aa26bd5dfaa03161ad566059cc052d3f
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[INFO] running `Command { std: "docker" "inspect" "f6252a0e1073a9a347f849173bea8462aa26bd5dfaa03161ad566059cc052d3f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f6252a0e1073a9a347f849173bea8462aa26bd5dfaa03161ad566059cc052d3f", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+33835004928d3bf65db4d4712e1330766263b0bd" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 81b12008e3679d1b72605c7779ae3b306eaf4b1e67b5819d2bba4fc52fe2d65e
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[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling nnnblast-core v0.1.0 (/opt/rustwide/workdir/crates/nnnblast-core)
[INFO] [stdout] warning: field `anchor_idx` is never read
[INFO] [stdout]   --> crates/nnnblast-core/src/search.rs:39:20
[INFO] [stdout]    |
[INFO] [stdout] 39 |     SingleAnchor { anchor_idx: usize, sequence: String },
[INFO] [stdout]    |     ------------   ^^^^^^^^^^
[INFO] [stdout]    |     |
[INFO] [stdout]    |     field in this variant
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `anchor_idx` is never read
[INFO] [stdout]   --> crates/nnnblast-core/src/search.rs:41:35
[INFO] [stdout]    |
[INFO] [stdout] 41 |     Composite { sequence: String, anchor_idx: usize },
[INFO] [stdout]    |     ---------                     ^^^^^^^^^^
[INFO] [stdout]    |     |
[INFO] [stdout]    |     field in this variant
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling nnnblast-wasm v0.1.0 (/opt/rustwide/workdir/crates/nnnblast-wasm)
[INFO] [stderr]    Compiling nnnblast-server v0.1.0 (/opt/rustwide/workdir/crates/nnnblast-server)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 31s
[INFO] running `Command { std: "docker" "inspect" "81b12008e3679d1b72605c7779ae3b306eaf4b1e67b5819d2bba4fc52fe2d65e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "81b12008e3679d1b72605c7779ae3b306eaf4b1e67b5819d2bba4fc52fe2d65e", kill_on_drop: false }`
[INFO] [stdout] 81b12008e3679d1b72605c7779ae3b306eaf4b1e67b5819d2bba4fc52fe2d65e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+33835004928d3bf65db4d4712e1330766263b0bd" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ca84afb3e264dc9d4a1de8d1baf8defeb9d0520a85d8d6abb830c32bf5377136
[INFO] running `Command { std: "docker" "start" "-a" "ca84afb3e264dc9d4a1de8d1baf8defeb9d0520a85d8d6abb830c32bf5377136", kill_on_drop: false }`
[INFO] [stdout] warning: field `anchor_idx` is never read
[INFO] [stdout]   --> crates/nnnblast-core/src/search.rs:39:20
[INFO] [stdout]    |
[INFO] [stdout] 39 |     SingleAnchor { anchor_idx: usize, sequence: String },
[INFO] [stdout]    |     ------------   ^^^^^^^^^^
[INFO] [stdout]    |     |
[INFO] [stdout]    |     field in this variant
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `anchor_idx` is never read
[INFO] [stdout]   --> crates/nnnblast-core/src/search.rs:41:35
[INFO] [stdout]    |
[INFO] [stdout] 41 |     Composite { sequence: String, anchor_idx: usize },
[INFO] [stdout]    |     ---------                     ^^^^^^^^^^
[INFO] [stdout]    |     |
[INFO] [stdout]    |     field in this variant
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling nnnblast-core v0.1.0 (/opt/rustwide/workdir/crates/nnnblast-core)
[INFO] [stderr]    Compiling nnnblast-server v0.1.0 (/opt/rustwide/workdir/crates/nnnblast-server)
[INFO] [stderr]    Compiling nnnblast-wasm v0.1.0 (/opt/rustwide/workdir/crates/nnnblast-wasm)
[INFO] [stdout] warning: field `anchor_idx` is never read
[INFO] [stdout]   --> crates/nnnblast-core/src/search.rs:39:20
[INFO] [stdout]    |
[INFO] [stdout] 39 |     SingleAnchor { anchor_idx: usize, sequence: String },
[INFO] [stdout]    |     ------------   ^^^^^^^^^^
[INFO] [stdout]    |     |
[INFO] [stdout]    |     field in this variant
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `anchor_idx` is never read
[INFO] [stdout]   --> crates/nnnblast-core/src/search.rs:41:35
[INFO] [stdout]    |
[INFO] [stdout] 41 |     Composite { sequence: String, anchor_idx: usize },
[INFO] [stdout]    |     ---------                     ^^^^^^^^^^
[INFO] [stdout]    |     |
[INFO] [stdout]    |     field in this variant
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 4.93s
[INFO] running `Command { std: "docker" "inspect" "ca84afb3e264dc9d4a1de8d1baf8defeb9d0520a85d8d6abb830c32bf5377136", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ca84afb3e264dc9d4a1de8d1baf8defeb9d0520a85d8d6abb830c32bf5377136", kill_on_drop: false }`
[INFO] [stdout] ca84afb3e264dc9d4a1de8d1baf8defeb9d0520a85d8d6abb830c32bf5377136
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+33835004928d3bf65db4d4712e1330766263b0bd" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 7741bc0bad1b1a5004801b8abff3d107cd29a66e345f07b09e9107731c8b91ef
[INFO] running `Command { std: "docker" "start" "-a" "7741bc0bad1b1a5004801b8abff3d107cd29a66e345f07b09e9107731c8b91ef", kill_on_drop: false }`
[INFO] [stderr] warning: field `anchor_idx` is never read
[INFO] [stderr]   --> crates/nnnblast-core/src/search.rs:39:20
[INFO] [stderr]    |
[INFO] [stderr] 39 |     SingleAnchor { anchor_idx: usize, sequence: String },
[INFO] [stderr]    |     ------------   ^^^^^^^^^^
[INFO] [stderr]    |     |
[INFO] [stderr]    |     field in this variant
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: field `anchor_idx` is never read
[INFO] [stderr]   --> crates/nnnblast-core/src/search.rs:41:35
[INFO] [stderr]    |
[INFO] [stderr] 41 |     Composite { sequence: String, anchor_idx: usize },
[INFO] [stderr]    |     ---------                     ^^^^^^^^^^
[INFO] [stderr]    |     |
[INFO] [stderr]    |     field in this variant
[INFO] [stderr] 
[INFO] [stderr] warning: `nnnblast-core` (lib) generated 2 warnings
[INFO] [stderr] warning: `nnnblast-core` (lib test) generated 2 warnings (2 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.31s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nnnblast_core-a84989d96318e9cc)
[INFO] [stdout] 
[INFO] [stdout] running 46 tests
[INFO] [stdout] test align::tests::exact_match ... ok
[INFO] [stdout] test align::tests::iupac_motif ... ok
[INFO] [stdout] test index::tests::empty_fasta ... ok
[INFO] [stdout] test index::tests::parse_simple_fasta ... ok
[INFO] [stdout] test query::tests::motif_to_blast_replaces_x ... ok
[INFO] [stdout] test query::tests::parse_exact_gap ... ok
[INFO] [stdout] test query::tests::nn_creates_gap_2 ... ok
[INFO] [stdout] test ncbi::tests::test_extract_value ... ok
[INFO] [stdout] test ncbi::tests::test_minus_strand_detection ... ok
[INFO] [stdout] test query::tests::parse_iupac_no_n ... ok
[INFO] [stdout] test query::tests::n_creates_gap ... ok
[INFO] [stdout] test align::tests::sliding_window ... ok
[INFO] [stdout] test ncbi::tests::test_parse_fasta_sequence ... ok
[INFO] [stdout] test query::tests::parse_three_motifs ... ok
[INFO] [stdout] test query::tests::reject_gap_min_exceeds_max ... ok
[INFO] [stdout] test query::tests::x_and_n_mixed ... ok
[INFO] [stdout] test query::tests::x_stays_in_motif ... ok
[INFO] [stdout] test query::tests::nnnnn_creates_gap_5 ... ok
[INFO] [stdout] test ncbi::tests::test_parse_blast_xml_real_format ... ok
[INFO] [stdout] test align::tests::too_many_mismatches ... ok
[INFO] [stdout] test query::tests::parse_simple_two_motifs ... ok
[INFO] [stdout] test query::tests::parse_with_mismatches ... ok
[INFO] [stdout] test query::tests::parse_single_motif ... ok
[INFO] [stdout] test query::tests::rna_with_x_and_n ... ok
[INFO] [stdout] test query::tests::x_does_not_match_in_iupac ... ok
[INFO] [stdout] test stats::tests::allow_one_mismatch ... ok
[INFO] [stdout] test stats::tests::uniform_exact_match_probability ... ok
[INFO] [stdout] test types::tests::adaptive_merge_reduces_regions ... ok
[INFO] [stdout] test stats::tests::x_wildcard_motif_probability ... ok
[INFO] [stdout] test stats::tests::bit_score_positive ... ok
[INFO] [stdout] test stats::tests::evalue_decreases_with_more_motifs ... ok
[INFO] [stdout] test search::tests::rna_query_works ... ok
[INFO] [stdout] test search::tests::reverse_complement_hit ... ok
[INFO] [stdout] test search::tests::no_hit_outside_gap_range ... ok
[INFO] [stdout] test stats::tests::evalue_with_large_db_size ... ok
[INFO] [stdout] test search::tests::find_with_mismatches ... ok
[INFO] [stdout] test stats::tests::evalue_single_motif ... ok
[INFO] [stdout] test search::tests::find_exact_structured_hit ... ok
[INFO] [stdout] test types::tests::empty_hits ... ok
[INFO] [stdout] test types::tests::max_accessions_caps ... ok
[INFO] [stdout] test types::tests::distant_hits_separate ... ok
[INFO] [stdout] test stats::tests::x_wildcard_never_matches ... ok
[INFO] [stdout] test types::tests::nearby_hits_merge ... ok
[INFO] [stdout] test types::tests::single_hit_one_region ... ok
[INFO] [stdout] test align::tests::one_mismatch ... ok
[INFO] [stdout] test query::tests::reject_empty ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 46 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/ncbi_integration.rs (/opt/rustwide/target/debug/deps/ncbi_integration-15d723b592146ae1)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test blast_submit_and_poll ... ignored
[INFO] [stdout] test efetch_batch_timing_regression ... ignored
[INFO] [stdout] test efetch_returns_valid_fasta ... ignored
[INFO] [stdout] test full_pipeline_16s_v4_region ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 4 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/nnnblast_server-43105e47f4bec43d)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nnnblast_wasm-ba19730d453e0606)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests nnnblast_core
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests nnnblast_wasm
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "7741bc0bad1b1a5004801b8abff3d107cd29a66e345f07b09e9107731c8b91ef", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7741bc0bad1b1a5004801b8abff3d107cd29a66e345f07b09e9107731c8b91ef", kill_on_drop: false }`
[INFO] [stdout] 7741bc0bad1b1a5004801b8abff3d107cd29a66e345f07b09e9107731c8b91ef
