[INFO] cloning repository https://github.com/sriram98v/Generalized-PD
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sriram98v/Generalized-PD" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2FGeneralized-PD", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2FGeneralized-PD'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 400b9400b1413382c4297ac7065137ed9d614f6f
[INFO] testing sriram98v/Generalized-PD against master#ec6f9a5b4413f74386267ef8efc93712c2ce6db6 for pr-155739-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2FGeneralized-PD" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/sriram98v/Generalized-PD
[INFO] finished tweaking git repo https://github.com/sriram98v/Generalized-PD
[INFO] tweaked toml for git repo https://github.com/sriram98v/Generalized-PD written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sriram98v/Generalized-PD on toolchain ec6f9a5b4413f74386267ef8efc93712c2ce6db6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sriram98v/Generalized-PD already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded divan-macros v0.1.14
[INFO] [stderr]   Downloaded divan v0.1.14
[INFO] [stderr]   Downloaded condtype v1.3.0
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[INFO] [stderr]   Downloaded syn v2.0.99
[INFO] [stderr]   Downloaded vers-vecs v1.6.0
[INFO] [stderr]   Downloaded phylo v2.0.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2b5a2cd44818395859a85b200a78c40a7a37dfece44d213f63afe59148cd5191
[INFO] running `Command { std: "docker" "start" "-a" "2b5a2cd44818395859a85b200a78c40a7a37dfece44d213f63afe59148cd5191", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2b5a2cd44818395859a85b200a78c40a7a37dfece44d213f63afe59148cd5191", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2b5a2cd44818395859a85b200a78c40a7a37dfece44d213f63afe59148cd5191", kill_on_drop: false }`
[INFO] [stdout] 2b5a2cd44818395859a85b200a78c40a7a37dfece44d213f63afe59148cd5191
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d8ed43271fc9eb4302246aa6dd2a5e84486ce47c14d44ddddbc958dbc51727a3
[INFO] running `Command { std: "docker" "start" "-a" "d8ed43271fc9eb4302246aa6dd2a5e84486ce47c14d44ddddbc958dbc51727a3", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling proc-macro2 v1.0.94
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling unicode-width v0.2.0
[INFO] [stderr]    Compiling portable-atomic v1.6.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling clap_builder v4.5.8
[INFO] [stderr]    Compiling vers-vecs v1.6.0
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling papergrid v0.17.0
[INFO] [stderr]    Compiling testing_table v0.3.0
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling syn v2.0.99
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling console v0.15.8
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]    Compiling num-iter v0.1.45
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rand_core v0.9.3
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[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling clap v4.5.8
[INFO] [stderr]    Compiling num v0.4.3
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling tabled_derive v0.11.0
[INFO] [stderr]    Compiling tabled v0.20.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling phylo v2.0.1
[INFO] [stderr]    Compiling PD v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: field `beta` is never read
[INFO] [stdout]    --> src/pd.rs:282:5
[INFO] [stdout]     |
[INFO] [stdout] 280 | pub struct AvgNormalizedPD<'a,T:NodeTaxa,W:EdgeWeight,Z:NodeWeight> {
[INFO] [stdout]     |            --------------- field in this struct
[INFO] [stdout] 281 |     tree: &'a SimpleRootedTree<T,W,Z>,
[INFO] [stdout] 282 |     beta: Vec<Vec<Vec<W>>>,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: crate `PD` should have a snake case name
[INFO] [stdout]   |
[INFO] [stdout]   = help: convert the identifier to snake case: `pd`
[INFO] [stdout]   = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 15 |     fn get_minPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD_node` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:20:8
[INFO] [stdout]    |
[INFO] [stdout] 20 |     fn get_minPD_node(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_node`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_minPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:26:8
[INFO] [stdout]    |
[INFO] [stdout] 26 |     fn get_norm_minPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:32:8
[INFO] [stdout]    |
[INFO] [stdout] 32 |     fn get_minPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_minPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:37:8
[INFO] [stdout]    |
[INFO] [stdout] 37 |     fn get_norm_minPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_min_genPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:42:8
[INFO] [stdout]    |
[INFO] [stdout] 42 |     fn get_min_genPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_min_genPD_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:46:8
[INFO] [stdout]    |
[INFO] [stdout] 46 |     fn get_min_genPD_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 |     fn get_maxPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD_node` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:55:8
[INFO] [stdout]    |
[INFO] [stdout] 55 |     fn get_maxPD_node(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_node`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_maxPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:61:8
[INFO] [stdout]    |
[INFO] [stdout] 61 |     fn get_norm_maxPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:66:8
[INFO] [stdout]    |
[INFO] [stdout] 66 |     fn get_maxPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_maxPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:71:8
[INFO] [stdout]    |
[INFO] [stdout] 71 |     fn get_norm_maxPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_max_genPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:76:8
[INFO] [stdout]    |
[INFO] [stdout] 76 |     fn get_max_genPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_max_genPD_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:80:8
[INFO] [stdout]    |
[INFO] [stdout] 80 |     fn get_max_genPD_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_avgPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 84 |     fn get_avgPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_avg_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 18.31s
[INFO] running `Command { std: "docker" "inspect" "d8ed43271fc9eb4302246aa6dd2a5e84486ce47c14d44ddddbc958dbc51727a3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d8ed43271fc9eb4302246aa6dd2a5e84486ce47c14d44ddddbc958dbc51727a3", kill_on_drop: false }`
[INFO] [stdout] d8ed43271fc9eb4302246aa6dd2a5e84486ce47c14d44ddddbc958dbc51727a3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dfd404fff7cf631840c3791e4b2058f3cf07d5c32326fb871e15d8e829f1b44f
[INFO] running `Command { std: "docker" "start" "-a" "dfd404fff7cf631840c3791e4b2058f3cf07d5c32326fb871e15d8e829f1b44f", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling condtype v1.3.0
[INFO] [stderr]    Compiling regex-lite v0.1.6
[INFO] [stderr]    Compiling divan-macros v0.1.14
[INFO] [stderr]    Compiling terminal_size v0.3.0
[INFO] [stderr]    Compiling clap_builder v4.5.8
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling rand_distr v0.5.1
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]    Compiling num-iter v0.1.45
[INFO] [stderr]    Compiling clap v4.5.8
[INFO] [stderr]    Compiling divan v0.1.14
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling num v0.4.3
[INFO] [stderr]    Compiling phylo v2.0.1
[INFO] [stderr]    Compiling PD v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: field `beta` is never read
[INFO] [stdout]    --> src/pd.rs:282:5
[INFO] [stdout]     |
[INFO] [stdout] 280 | pub struct AvgNormalizedPD<'a,T:NodeTaxa,W:EdgeWeight,Z:NodeWeight> {
[INFO] [stdout]     |            --------------- field in this struct
[INFO] [stdout] 281 |     tree: &'a SimpleRootedTree<T,W,Z>,
[INFO] [stdout] 282 |     beta: Vec<Vec<Vec<W>>>,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 15 |     fn get_minPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD_node` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:20:8
[INFO] [stdout]    |
[INFO] [stdout] 20 |     fn get_minPD_node(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_node`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_minPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:26:8
[INFO] [stdout]    |
[INFO] [stdout] 26 |     fn get_norm_minPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:32:8
[INFO] [stdout]    |
[INFO] [stdout] 32 |     fn get_minPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_minPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:37:8
[INFO] [stdout]    |
[INFO] [stdout] 37 |     fn get_norm_minPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_min_genPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:42:8
[INFO] [stdout]    |
[INFO] [stdout] 42 |     fn get_min_genPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_min_genPD_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:46:8
[INFO] [stdout]    |
[INFO] [stdout] 46 |     fn get_min_genPD_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 |     fn get_maxPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD_node` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:55:8
[INFO] [stdout]    |
[INFO] [stdout] 55 |     fn get_maxPD_node(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_node`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_maxPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:61:8
[INFO] [stdout]    |
[INFO] [stdout] 61 |     fn get_norm_maxPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:66:8
[INFO] [stdout]    |
[INFO] [stdout] 66 |     fn get_maxPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_maxPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:71:8
[INFO] [stdout]    |
[INFO] [stdout] 71 |     fn get_norm_maxPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_max_genPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:76:8
[INFO] [stdout]    |
[INFO] [stdout] 76 |     fn get_max_genPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_max_genPD_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:80:8
[INFO] [stdout]    |
[INFO] [stdout] 80 |     fn get_max_genPD_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_avgPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 84 |     fn get_avgPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_avg_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `beta` is never read
[INFO] [stdout]    --> src/pd.rs:282:5
[INFO] [stdout]     |
[INFO] [stdout] 280 | pub struct AvgNormalizedPD<'a,T:NodeTaxa,W:EdgeWeight,Z:NodeWeight> {
[INFO] [stdout]     |            --------------- field in this struct
[INFO] [stdout] 281 |     tree: &'a SimpleRootedTree<T,W,Z>,
[INFO] [stdout] 282 |     beta: Vec<Vec<Vec<W>>>,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: crate `PD` should have a snake case name
[INFO] [stdout]   |
[INFO] [stdout]   = help: convert the identifier to snake case: `pd`
[INFO] [stdout]   = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:15:8
[INFO] [stdout]    |
[INFO] [stdout] 15 |     fn get_minPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD_node` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:20:8
[INFO] [stdout]    |
[INFO] [stdout] 20 |     fn get_minPD_node(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_node`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_minPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:26:8
[INFO] [stdout]    |
[INFO] [stdout] 26 |     fn get_norm_minPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_minPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:32:8
[INFO] [stdout]    |
[INFO] [stdout] 32 |     fn get_minPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_minPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:37:8
[INFO] [stdout]    |
[INFO] [stdout] 37 |     fn get_norm_minPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_min_genPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:42:8
[INFO] [stdout]    |
[INFO] [stdout] 42 |     fn get_min_genPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_min_genPD_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:46:8
[INFO] [stdout]    |
[INFO] [stdout] 46 |     fn get_min_genPD_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:50:8
[INFO] [stdout]    |
[INFO] [stdout] 50 |     fn get_maxPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD_node` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:55:8
[INFO] [stdout]    |
[INFO] [stdout] 55 |     fn get_maxPD_node(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_node`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_maxPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:61:8
[INFO] [stdout]    |
[INFO] [stdout] 61 |     fn get_norm_maxPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_maxPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:66:8
[INFO] [stdout]    |
[INFO] [stdout] 66 |     fn get_maxPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_norm_maxPD_taxa_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:71:8
[INFO] [stdout]    |
[INFO] [stdout] 71 |     fn get_norm_maxPD_taxa_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd_taxa_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_max_genPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:76:8
[INFO] [stdout]    |
[INFO] [stdout] 76 |     fn get_max_genPD(
[INFO] [stdout]    |        ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_max_genPD_set` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:80:8
[INFO] [stdout]    |
[INFO] [stdout] 80 |     fn get_max_genPD_set(
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait method `get_avgPD` should have a snake case name
[INFO] [stdout]   --> src/pd/phylogenetic_diversity.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 84 |     fn get_avgPD(
[INFO] [stdout]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_avg_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `AvgNormalizedPD`
[INFO] [stdout]  --> tests/main.rs:3:133
[INFO] [stdout]   |
[INFO] [stdout] 3 | ..._pd, phylogenetic_diversity::{binarize_tree, TreePDMap}, AvgNormalizedPD, MinMaxNormalizedPD, TreePD};
[INFO] [stdout]   |                                                             ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `AvgNormalizedPD`
[INFO] [stdout]  --> examples/tree-prop.rs:4:53
[INFO] [stdout]   |
[INFO] [stdout] 4 | use PD::pd::{phylogenetic_diversity::binarize_tree, AvgNormalizedPD, MinMaxNormalizedPD};
[INFO] [stdout]   |                                                     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `bf_min_norm_pd`
[INFO] [stdout]   --> tests/main.rs:59:9
[INFO] [stdout]    |
[INFO] [stdout] 59 |     let bf_min_norm_pd = brute_force_min_pd(&tree);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bf_min_norm_pd`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `bf_avg_norm_pd`
[INFO] [stdout]   --> tests/main.rs:60:9
[INFO] [stdout]    |
[INFO] [stdout] 60 |     let bf_avg_norm_pd = brute_force_avg_pd_global(&tree);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bf_avg_norm_pd`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `sync::Mutex`
[INFO] [stdout]  --> examples/cli.rs:1:42
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::{collections::HashMap, env, fs, sync::Mutex};
[INFO] [stdout]   |                                          ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `ParallelProgressIterator` and `ProgressStyle`
[INFO] [stdout]  --> examples/cli.rs:2:17
[INFO] [stdout]   |
[INFO] [stdout] 2 | use indicatif::{ParallelProgressIterator, ProgressStyle};
[INFO] [stdout]   |                 ^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `AvgNormalizedPD` and `MinMaxNormalizedPD`
[INFO] [stdout]  --> examples/cli.rs:5:53
[INFO] [stdout]   |
[INFO] [stdout] 5 | use PD::pd::{phylogenetic_diversity::binarize_tree, AvgNormalizedPD, MinMaxNormalizedPD};
[INFO] [stdout]   |                                                     ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rand::seq::IteratorRandom`
[INFO] [stdout]  --> examples/cli.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use rand::seq::IteratorRandom;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `IntoParallelRefIterator` and `ParallelBridge`
[INFO] [stdout]  --> examples/cli.rs:7:19
[INFO] [stdout]   |
[INFO] [stdout] 7 | use rayon::iter::{IntoParallelRefIterator, ParallelBridge, ParallelIterator};
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Table`
[INFO] [stdout]   --> examples/cli.rs:11:22
[INFO] [stdout]    |
[INFO] [stdout] 11 | use tabled::{Tabled, Table};
[INFO] [stdout]    |                      ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `ParallelIterator`
[INFO] [stdout]  --> examples/cli.rs:7:60
[INFO] [stdout]   |
[INFO] [stdout] 7 | use rayon::iter::{IntoParallelRefIterator, ParallelBridge, ParallelIterator};
[INFO] [stdout]   |                                                            ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `num_taxa`
[INFO] [stdout]   --> examples/cli.rs:56:9
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let num_taxa = tree.num_taxa();
[INFO] [stdout]    |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_taxa`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `leaf_node_ids`
[INFO] [stdout]   --> examples/cli.rs:60:9
[INFO] [stdout]    |
[INFO] [stdout] 60 |     let leaf_node_ids = tree.get_leaf_ids().collect_vec();
[INFO] [stdout]    |         ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_leaf_node_ids`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Normpd` is never constructed
[INFO] [stdout]   --> examples/cli.rs:14:8
[INFO] [stdout]    |
[INFO] [stdout] 14 | struct Normpd {
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `AvgNormalizedPD`, `TreePDMap`, `TreePD`, `binarize_tree`, `brute_force_avg_pd_global`, `brute_force_max_pd`, and `brute_force_min_pd`
[INFO] [stdout]  --> examples/distributions.rs:3:14
[INFO] [stdout]   |
[INFO] [stdout] 3 | ...::{brute_force_avg_pd_global, brute_force_max_pd, brute_force_min_pd, phylogenetic_diversity::{binarize_tree, TreePDMap}, AvgNormalizedPD, MinMaxNormalizedPD, TreePD};
[INFO] [stdout]   |       ^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^                           ^^^^^^^^^^^^^  ^^^^^^^^^   ^^^^^^^^^^^^^^^                      ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `collections::HashMap`
[INFO] [stdout]  --> examples/distributions.rs:6:11
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::{collections::HashMap, error::Error};
[INFO] [stdout]   |           ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 13.99s
[INFO] running `Command { std: "docker" "inspect" "dfd404fff7cf631840c3791e4b2058f3cf07d5c32326fb871e15d8e829f1b44f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dfd404fff7cf631840c3791e4b2058f3cf07d5c32326fb871e15d8e829f1b44f", kill_on_drop: false }`
[INFO] [stdout] dfd404fff7cf631840c3791e4b2058f3cf07d5c32326fb871e15d8e829f1b44f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8ef9e60cf3a17b3dd8d3675c1f4bf745ab89a9a66d8b90054082564dbb1c74b1
[INFO] running `Command { std: "docker" "start" "-a" "8ef9e60cf3a17b3dd8d3675c1f4bf745ab89a9a66d8b90054082564dbb1c74b1", kill_on_drop: false }`
[INFO] [stderr] warning: field `beta` is never read
[INFO] [stderr]    --> src/pd.rs:282:5
[INFO] [stderr]     |
[INFO] [stderr] 280 | pub struct AvgNormalizedPD<'a,T:NodeTaxa,W:EdgeWeight,Z:NodeWeight> {
[INFO] [stderr]     |            --------------- field in this struct
[INFO] [stderr] 281 |     tree: &'a SimpleRootedTree<T,W,Z>,
[INFO] [stderr] 282 |     beta: Vec<Vec<Vec<W>>>,
[INFO] [stderr]     |     ^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: crate `PD` should have a snake case name
[INFO] [stderr]   |
[INFO] [stderr]   = help: convert the identifier to snake case: `pd`
[INFO] [stderr]   = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_minPD` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:15:8
[INFO] [stderr]    |
[INFO] [stderr] 15 |     fn get_minPD(
[INFO] [stderr]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_minPD_node` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:20:8
[INFO] [stderr]    |
[INFO] [stderr] 20 |     fn get_minPD_node(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_node`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_norm_minPD` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:26:8
[INFO] [stderr]    |
[INFO] [stderr] 26 |     fn get_norm_minPD(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_minPD_taxa_set` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:32:8
[INFO] [stderr]    |
[INFO] [stderr] 32 |     fn get_minPD_taxa_set(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd_taxa_set`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_norm_minPD_taxa_set` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:37:8
[INFO] [stderr]    |
[INFO] [stderr] 37 |     fn get_norm_minPD_taxa_set(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_min_pd_taxa_set`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_min_genPD` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:42:8
[INFO] [stderr]    |
[INFO] [stderr] 42 |     fn get_min_genPD(
[INFO] [stderr]    |        ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_min_genPD_set` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:46:8
[INFO] [stderr]    |
[INFO] [stderr] 46 |     fn get_min_genPD_set(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_min_gen_pd_set`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_maxPD` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:50:8
[INFO] [stderr]    |
[INFO] [stderr] 50 |     fn get_maxPD(
[INFO] [stderr]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_maxPD_node` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:55:8
[INFO] [stderr]    |
[INFO] [stderr] 55 |     fn get_maxPD_node(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_node`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_norm_maxPD` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:61:8
[INFO] [stderr]    |
[INFO] [stderr] 61 |     fn get_norm_maxPD(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_maxPD_taxa_set` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:66:8
[INFO] [stderr]    |
[INFO] [stderr] 66 |     fn get_maxPD_taxa_set(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_pd_taxa_set`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_norm_maxPD_taxa_set` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:71:8
[INFO] [stderr]    |
[INFO] [stderr] 71 |     fn get_norm_maxPD_taxa_set(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_norm_max_pd_taxa_set`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_max_genPD` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:76:8
[INFO] [stderr]    |
[INFO] [stderr] 76 |     fn get_max_genPD(
[INFO] [stderr]    |        ^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_max_genPD_set` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:80:8
[INFO] [stderr]    |
[INFO] [stderr] 80 |     fn get_max_genPD_set(
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `get_max_gen_pd_set`
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_avgPD` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:84:8
[INFO] [stderr]    |
[INFO] [stderr] 84 |     fn get_avgPD(
[INFO] [stderr]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_avg_pd`
[INFO] [stderr] 
[INFO] [stderr] warning: `PD` (lib) generated 17 warnings
[INFO] [stderr] warning: unused import: `AvgNormalizedPD`
[INFO] [stderr]  --> tests/main.rs:3:133
[INFO] [stderr]   |
[INFO] [stderr] 3 | ..._pd, phylogenetic_diversity::{binarize_tree, TreePDMap}, AvgNormalizedPD, MinMaxNormalizedPD, TreePD};
[INFO] [stderr]   |                                                             ^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `bf_min_norm_pd`
[INFO] [stderr]   --> tests/main.rs:59:9
[INFO] [stderr]    |
[INFO] [stderr] 59 |     let bf_min_norm_pd = brute_force_min_pd(&tree);
[INFO] [stderr]    |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bf_min_norm_pd`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `bf_avg_norm_pd`
[INFO] [stderr]   --> tests/main.rs:60:9
[INFO] [stderr]    |
[INFO] [stderr] 60 |     let bf_avg_norm_pd = brute_force_avg_pd_global(&tree);
[INFO] [stderr]    |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bf_avg_norm_pd`
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `sync::Mutex`
[INFO] [stderr]  --> examples/cli.rs:1:42
[INFO] [stderr]   |
[INFO] [stderr] 1 | use std::{collections::HashMap, env, fs, sync::Mutex};
[INFO] [stderr]   |                                          ^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `ParallelProgressIterator` and `ProgressStyle`
[INFO] [stderr]  --> examples/cli.rs:2:17
[INFO] [stderr]   |
[INFO] [stderr] 2 | use indicatif::{ParallelProgressIterator, ProgressStyle};
[INFO] [stderr]   |                 ^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `AvgNormalizedPD` and `MinMaxNormalizedPD`
[INFO] [stderr]  --> examples/cli.rs:5:53
[INFO] [stderr]   |
[INFO] [stderr] 5 | use PD::pd::{phylogenetic_diversity::binarize_tree, AvgNormalizedPD, MinMaxNormalizedPD};
[INFO] [stderr]   |                                                     ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `rand::seq::IteratorRandom`
[INFO] [stderr]  --> examples/cli.rs:6:5
[INFO] [stderr]   |
[INFO] [stderr] 6 | use rand::seq::IteratorRandom;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `IntoParallelRefIterator` and `ParallelBridge`
[INFO] [stderr]  --> examples/cli.rs:7:19
[INFO] [stderr]   |
[INFO] [stderr] 7 | use rayon::iter::{IntoParallelRefIterator, ParallelBridge, ParallelIterator};
[INFO] [stderr]   |                   ^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `Table`
[INFO] [stderr]   --> examples/cli.rs:11:22
[INFO] [stderr]    |
[INFO] [stderr] 11 | use tabled::{Tabled, Table};
[INFO] [stderr]    |                      ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `ParallelIterator`
[INFO] [stderr]  --> examples/cli.rs:7:60
[INFO] [stderr]   |
[INFO] [stderr] 7 | use rayon::iter::{IntoParallelRefIterator, ParallelBridge, ParallelIterator};
[INFO] [stderr]   |                                                            ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `num_taxa`
[INFO] [stderr]   --> examples/cli.rs:56:9
[INFO] [stderr]    |
[INFO] [stderr] 56 |     let num_taxa = tree.num_taxa();
[INFO] [stderr]    |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_taxa`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `leaf_node_ids`
[INFO] [stderr]   --> examples/cli.rs:60:9
[INFO] [stderr]    |
[INFO] [stderr] 60 |     let leaf_node_ids = tree.get_leaf_ids().collect_vec();
[INFO] [stderr]    |         ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_leaf_node_ids`
[INFO] [stderr] 
[INFO] [stderr] warning: struct `Normpd` is never constructed
[INFO] [stderr]   --> examples/cli.rs:14:8
[INFO] [stderr]    |
[INFO] [stderr] 14 | struct Normpd {
[INFO] [stderr]    |        ^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `AvgNormalizedPD`, `TreePDMap`, `TreePD`, `binarize_tree`, `brute_force_avg_pd_global`, `brute_force_max_pd`, and `brute_force_min_pd`
[INFO] [stderr]  --> examples/distributions.rs:3:14
[INFO] [stderr]   |
[INFO] [stderr] 3 | ...::{brute_force_avg_pd_global, brute_force_max_pd, brute_force_min_pd, phylogenetic_diversity::{binarize_tree, TreePDMap}, AvgNormalizedPD, MinMaxNormalizedPD, TreePD};
[INFO] [stderr]   |       ^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^                           ^^^^^^^^^^^^^  ^^^^^^^^^   ^^^^^^^^^^^^^^^                      ^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `collections::HashMap`
[INFO] [stderr]  --> examples/distributions.rs:6:11
[INFO] [stderr]   |
[INFO] [stderr] 6 | use std::{collections::HashMap, error::Error};
[INFO] [stderr]   |           ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `AvgNormalizedPD`
[INFO] [stderr]  --> examples/tree-prop.rs:4:53
[INFO] [stderr]   |
[INFO] [stderr] 4 | use PD::pd::{phylogenetic_diversity::binarize_tree, AvgNormalizedPD, MinMaxNormalizedPD};
[INFO] [stderr]   |                                                     ^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait method `get_minPD` should have a snake case name
[INFO] [stderr]   --> src/pd/phylogenetic_diversity.rs:15:8
[INFO] [stderr]    |
[INFO] [stderr] 15 |     fn get_minPD(
[INFO] [stderr]    |        ^^^^^^^^^ help: convert the identifier to snake case: `get_min_pd`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `PD` (test "main") generated 3 warnings (run `cargo fix --test "main" -p PD` to apply 3 suggestions)
[INFO] [stderr] warning: `PD` (example "cli") generated 10 warnings (run `cargo fix --example "cli" -p PD` to apply 8 suggestions)
[INFO] [stderr] warning: `PD` (example "distributions") generated 2 warnings (run `cargo fix --example "distributions" -p PD` to apply 2 suggestions)
[INFO] [stderr] warning: `PD` (example "tree-prop") generated 1 warning (run `cargo fix --example "tree-prop" -p PD` to apply 1 suggestion)
[INFO] [stderr] warning: `PD` (lib test) generated 16 warnings (15 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.16s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/PD-5cb5cab64c384960)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/genpd.rs (/opt/rustwide/target/debug/deps/genpd-76c40f589b29f36e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/main.rs (/opt/rustwide/target/debug/deps/main-5aa1da73fff8eebb)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test max_norm_pd_tree_a ... ok
[INFO] [stdout] test min_norm_pd_tree_a ... ok
[INFO] [stdout] test binarize ... ok
[INFO] [stdout] test random_tree ... ok
[INFO] [stdout] test pd ... ok
[INFO] [stdout] test vanilla ... ok
[INFO] [stdout] test normpd ... ok
[INFO] [stdout] test print_testcases ... ok
[INFO] [stdout] test min_norm_pd_matches_brute_force_random ... ok
[INFO] [stdout] test max_norm_pd_matches_brute_force_random ... ok
[INFO] [stderr]    Doc-tests PD
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.27s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "8ef9e60cf3a17b3dd8d3675c1f4bf745ab89a9a66d8b90054082564dbb1c74b1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8ef9e60cf3a17b3dd8d3675c1f4bf745ab89a9a66d8b90054082564dbb1c74b1", kill_on_drop: false }`
[INFO] [stdout] 8ef9e60cf3a17b3dd8d3675c1f4bf745ab89a9a66d8b90054082564dbb1c74b1
