[INFO] cloning repository https://github.com/briannadon/bsa-gprime
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/briannadon/bsa-gprime" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbriannadon%2Fbsa-gprime", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7c3d0e62e51b3ec079c5bc1b16c89e4dee5ae812
[INFO] testing briannadon/bsa-gprime against master#ec6f9a5b4413f74386267ef8efc93712c2ce6db6 for pr-155739-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbriannadon%2Fbsa-gprime" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
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[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/briannadon/bsa-gprime
[INFO] finished tweaking git repo https://github.com/briannadon/bsa-gprime
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[INFO] validating manifest of git repo https://github.com/briannadon/bsa-gprime on toolchain ec6f9a5b4413f74386267ef8efc93712c2ce6db6
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[INFO] crate git repo https://github.com/briannadon/bsa-gprime already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stderr]    Compiling bsa-gprime v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 29s
[INFO] running `Command { std: "docker" "inspect" "ba133c292223954fe8f9464d9a3d45023132a0f860ea9fdd9c80c7b59a010efa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ba133c292223954fe8f9464d9a3d45023132a0f860ea9fdd9c80c7b59a010efa", kill_on_drop: false }`
[INFO] [stdout] ba133c292223954fe8f9464d9a3d45023132a0f860ea9fdd9c80c7b59a010efa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3e92dbdc1070de05e714d6a60b4b6b20c2367db042fd3313f9c97ab06ce99adc
[INFO] running `Command { std: "docker" "start" "-a" "3e92dbdc1070de05e714d6a60b4b6b20c2367db042fd3313f9c97ab06ce99adc", kill_on_drop: false }`
[INFO] [stderr]    Compiling bsa-gprime v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated function `significance::estimate_null_nonparametric`: Use estimate_null_robust instead for full paper compliance
[INFO] [stdout]    --> src/significance.rs:489:22
[INFO] [stdout]     |
[INFO] [stdout] 489 |         let params = estimate_null_nonparametric(&values);
[INFO] [stdout]     |                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `significance::estimate_null_nonparametric`: Use estimate_null_robust instead for full paper compliance
[INFO] [stdout]    --> src/significance.rs:500:22
[INFO] [stdout]     |
[INFO] [stdout] 500 |         let params = estimate_null_nonparametric(&values);
[INFO] [stdout]     |                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated function `significance::estimate_null_nonparametric`: Use estimate_null_robust instead for full paper compliance
[INFO] [stdout]    --> src/significance.rs:668:22
[INFO] [stdout]     |
[INFO] [stdout] 668 |         let legacy = estimate_null_nonparametric(&values);
[INFO] [stdout]     |                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.68s
[INFO] running `Command { std: "docker" "inspect" "3e92dbdc1070de05e714d6a60b4b6b20c2367db042fd3313f9c97ab06ce99adc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3e92dbdc1070de05e714d6a60b4b6b20c2367db042fd3313f9c97ab06ce99adc", kill_on_drop: false }`
[INFO] [stdout] 3e92dbdc1070de05e714d6a60b4b6b20c2367db042fd3313f9c97ab06ce99adc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+ec6f9a5b4413f74386267ef8efc93712c2ce6db6" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 28829b80fd707cb325c977f28d212a3a7ee814b685109f10a8e6643470d0a7a7
[INFO] running `Command { std: "docker" "start" "-a" "28829b80fd707cb325c977f28d212a3a7ee814b685109f10a8e6643470d0a7a7", kill_on_drop: false }`
[INFO] [stderr] warning: use of deprecated function `significance::estimate_null_nonparametric`: Use estimate_null_robust instead for full paper compliance
[INFO] [stderr]    --> src/significance.rs:489:22
[INFO] [stderr]     |
[INFO] [stderr] 489 |         let params = estimate_null_nonparametric(&values);
[INFO] [stderr]     |                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated function `significance::estimate_null_nonparametric`: Use estimate_null_robust instead for full paper compliance
[INFO] [stderr]    --> src/significance.rs:500:22
[INFO] [stderr]     |
[INFO] [stderr] 500 |         let params = estimate_null_nonparametric(&values);
[INFO] [stderr]     |                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated function `significance::estimate_null_nonparametric`: Use estimate_null_robust instead for full paper compliance
[INFO] [stderr]    --> src/significance.rs:668:22
[INFO] [stderr]     |
[INFO] [stderr] 668 |         let legacy = estimate_null_nonparametric(&values);
[INFO] [stderr]     |                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `bsa-gprime` (lib test) generated 3 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.22s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bsa_gprime-fb5a640c5d2b8899)
[INFO] [stdout] 
[INFO] [stdout] running 43 tests
[INFO] [stdout] test peaks::tests::test_identify_peaks_basic ... ok
[INFO] [stdout] test peaks::tests::test_identify_peaks_merging ... ok
[INFO] [stdout] test peaks::tests::test_natural_chrom_cmp ... ok
[INFO] [stdout] test plotting::downsample::tests::panel_pixel_width_basic ... ok
[INFO] [stdout] test peaks::tests::test_identify_peaks_empty ... ok
[INFO] [stdout] test significance::tests::test_bh_fdr_basic ... ok
[INFO] [stdout] test significance::tests::test_bh_fdr_preserves_order ... ok
[INFO] [stdout] test plotting::downsample::tests::preserves_extremes ... ok
[INFO] [stdout] test plotting::downsample::tests::large_input_downsamples ... ok
[INFO] [stdout] test significance::tests::test_compute_median ... ok
[INFO] [stdout] test significance::tests::test_bh_fdr_empty ... ok
[INFO] [stdout] test significance::tests::test_estimate_null_robust_empty ... ok
[INFO] [stdout] test plotting::downsample::tests::small_input_returns_none ... ok
[INFO] [stdout] test smoothing::tests::test_compute_smoothing_factors ... ok
[INFO] [stdout] test significance::tests::test_hampel_threshold_applied ... ok
[INFO] [stdout] test significance::tests::test_nonparametric_null_with_outliers ... ok
[INFO] [stdout] test significance::tests::test_nonparametric_null_uniform ... ok
[INFO] [stdout] test significance::tests::test_estimate_mode_robust_constant ... ok
[INFO] [stdout] test smoothing::tests::test_compute_smoothing_factors_with_recombination ... ok
[INFO] [stdout] test smoothing::tests::test_compute_smoothing_factors_sparse ... ok
[INFO] [stdout] test significance::tests::test_parametric_null_basic ... ok
[INFO] [stdout] test significance::tests::test_parametric_null_gprime ... ok
[INFO] [stdout] test significance::tests::test_parametric_null_gprime_with_covariance ... ok
[INFO] [stdout] test significance::tests::test_parametric_null_gprime_default ... ok
[INFO] [stdout] test significance::tests::test_estimate_null_robust_basic ... ok
[INFO] [stdout] test significance::tests::test_robust_vs_legacy ... ok
[INFO] [stdout] test smoothing::tests::test_smoothing_reduces_spike ... ok
[INFO] [stdout] test significance::tests::test_p_values_in_range ... ok
[INFO] [stdout] test smoothing::tests::test_tricube_at_boundary ... ok
[INFO] [stdout] test smoothing::tests::test_single_snp ... ok
[INFO] [stdout] test smoothing::tests::test_tricube_outside ... ok
[INFO] [stdout] test smoothing::tests::test_uniform_values_unchanged ... ok
[INFO] [stdout] test statistics::tests::test_all_zeros ... ok
[INFO] [stdout] test statistics::tests::test_no_association ... ok
[INFO] [stdout] test significance::tests::test_estimate_mode_robust_basic ... ok
[INFO] [stdout] test significance::tests::test_estimate_null_robust_with_outliers ... ok
[INFO] [stdout] test statistics::tests::test_snp_index ... ok
[INFO] [stdout] test statistics::tests::test_perfect_association ... ok
[INFO] [stdout] test smoothing::tests::test_separate_chromosomes ... ok
[INFO] [stdout] test significance::tests::test_p_values_monotonic_with_g ... ok
[INFO] [stdout] test smoothing::tests::test_tricube_at_zero ... ok
[INFO] [stdout] test smoothing::tests::test_compute_smoothing_factors_empty ... ok
[INFO] [stdout] test significance::tests::test_estimate_null_robust_all_zeros ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 43 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/bsa_gprime-7f967330c9a4392d)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bsa_gprime
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "28829b80fd707cb325c977f28d212a3a7ee814b685109f10a8e6643470d0a7a7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "28829b80fd707cb325c977f28d212a3a7ee814b685109f10a8e6643470d0a7a7", kill_on_drop: false }`
[INFO] [stdout] 28829b80fd707cb325c977f28d212a3a7ee814b685109f10a8e6643470d0a7a7
