[INFO] cloning repository https://github.com/atomicincrement/alphafold-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/atomicincrement/alphafold-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fatomicincrement%2Falphafold-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fatomicincrement%2Falphafold-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 493edfeffbbe09f7472a671d34f78605bc2f5c24
[INFO] checking atomicincrement/alphafold-rs against master#cf79d034aa3d8f396d407aafce6f1ccd818e710e for pr-155657
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fatomicincrement%2Falphafold-rs" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/atomicincrement/alphafold-rs
[INFO] finished tweaking git repo https://github.com/atomicincrement/alphafold-rs
[INFO] tweaked toml for git repo https://github.com/atomicincrement/alphafold-rs written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/atomicincrement/alphafold-rs on toolchain cf79d034aa3d8f396d407aafce6f1ccd818e710e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf79d034aa3d8f396d407aafce6f1ccd818e710e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/atomicincrement/alphafold-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cf79d034aa3d8f396d407aafce6f1ccd818e710e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+cf79d034aa3d8f396d407aafce6f1ccd818e710e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "c16a5c6b99388aa8fb42f9c099d3e046ddcc9136e405c89855cf07074a4f4662", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c16a5c6b99388aa8fb42f9c099d3e046ddcc9136e405c89855cf07074a4f4662", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c16a5c6b99388aa8fb42f9c099d3e046ddcc9136e405c89855cf07074a4f4662", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+cf79d034aa3d8f396d407aafce6f1ccd818e710e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "76ad37da1859111070d975f5a4d9467019ff423c9c849c3d2f4863d6473a550c", kill_on_drop: false }`
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[INFO] [stderr]     Checking bevy v0.13.2
[INFO] [stderr]     Checking alphafold-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: constant `XMSA` is never used
[INFO] [stdout]   --> src/evoformer.rs:40:7
[INFO] [stdout]    |
[INFO] [stdout] 40 | const XMSA: &str = "alphafold/alphafold_iteration/evoformer/extra_msa_stack/";
[INFO] [stdout]    |       ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `extra_msa_block` is never used
[INFO] [stdout]    --> src/evoformer.rs:945:4
[INFO] [stdout]     |
[INFO] [stdout] 945 | fn extra_msa_block(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `sequence`, `plddt_scores`, and `rmsd` are never read
[INFO] [stdout]   --> src/visualise.rs:17:13
[INFO] [stdout]    |
[INFO] [stdout] 11 |     pub struct VisualizerConfig {
[INFO] [stdout]    |                ---------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 17 |         pub sequence: String,
[INFO] [stdout]    |             ^^^^^^^^
[INFO] [stdout] 18 |         /// Per-residue confidence scores (pLDDT), 0-100.
[INFO] [stdout] 19 |         pub plddt_scores: Option<Vec<f32>>,
[INFO] [stdout]    |             ^^^^^^^^^^^^
[INFO] [stdout] 20 |         /// RMSD value to display (if computed).
[INFO] [stdout] 21 |         pub rmsd: Option<f32>,
[INFO] [stdout]    |             ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `VisualizerConfig` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `to_linear_rgb` is never used
[INFO] [stdout]   --> src/visualise.rs:33:16
[INFO] [stdout]    |
[INFO] [stdout] 32 |     impl Color {
[INFO] [stdout]    |     ---------- method in this implementation
[INFO] [stdout] 33 |         pub fn to_linear_rgb(self) -> [f32; 3] {
[INFO] [stdout]    |                ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `residue_idx` is never read
[INFO] [stdout]   --> src/visualise.rs:98:13
[INFO] [stdout]    |
[INFO] [stdout] 97 |     pub struct PredictedAtom {
[INFO] [stdout]    |                ------------- field in this struct
[INFO] [stdout] 98 |         pub residue_idx: usize,
[INFO] [stdout]    |             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `residue_idx` is never read
[INFO] [stdout]    --> src/visualise.rs:104:13
[INFO] [stdout]     |
[INFO] [stdout] 103 |     pub struct ReferenceAtom {
[INFO] [stdout]     |                ------------- field in this struct
[INFO] [stdout] 104 |         pub residue_idx: usize,
[INFO] [stdout]     |             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `residue_idx` is never read
[INFO] [stdout]    --> src/visualise.rs:110:13
[INFO] [stdout]     |
[INFO] [stdout] 109 |     pub struct BackboneBond {
[INFO] [stdout]     |                ------------ field in this struct
[INFO] [stdout] 110 |         pub residue_idx: usize,
[INFO] [stdout]     |             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `XMSA` is never used
[INFO] [stdout]   --> src/evoformer.rs:40:7
[INFO] [stdout]    |
[INFO] [stdout] 40 | const XMSA: &str = "alphafold/alphafold_iteration/evoformer/extra_msa_stack/";
[INFO] [stdout]    |       ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `extra_msa_block` is never used
[INFO] [stdout]    --> src/evoformer.rs:945:4
[INFO] [stdout]     |
[INFO] [stdout] 945 | fn extra_msa_block(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `sequence`, `plddt_scores`, and `rmsd` are never read
[INFO] [stdout]   --> src/visualise.rs:17:13
[INFO] [stdout]    |
[INFO] [stdout] 11 |     pub struct VisualizerConfig {
[INFO] [stdout]    |                ---------------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 17 |         pub sequence: String,
[INFO] [stdout]    |             ^^^^^^^^
[INFO] [stdout] 18 |         /// Per-residue confidence scores (pLDDT), 0-100.
[INFO] [stdout] 19 |         pub plddt_scores: Option<Vec<f32>>,
[INFO] [stdout]    |             ^^^^^^^^^^^^
[INFO] [stdout] 20 |         /// RMSD value to display (if computed).
[INFO] [stdout] 21 |         pub rmsd: Option<f32>,
[INFO] [stdout]    |             ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `VisualizerConfig` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `to_linear_rgb` is never used
[INFO] [stdout]   --> src/visualise.rs:33:16
[INFO] [stdout]    |
[INFO] [stdout] 32 |     impl Color {
[INFO] [stdout]    |     ---------- method in this implementation
[INFO] [stdout] 33 |         pub fn to_linear_rgb(self) -> [f32; 3] {
[INFO] [stdout]    |                ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `residue_idx` is never read
[INFO] [stdout]   --> src/visualise.rs:98:13
[INFO] [stdout]    |
[INFO] [stdout] 97 |     pub struct PredictedAtom {
[INFO] [stdout]    |                ------------- field in this struct
[INFO] [stdout] 98 |         pub residue_idx: usize,
[INFO] [stdout]    |             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `residue_idx` is never read
[INFO] [stdout]    --> src/visualise.rs:104:13
[INFO] [stdout]     |
[INFO] [stdout] 103 |     pub struct ReferenceAtom {
[INFO] [stdout]     |                ------------- field in this struct
[INFO] [stdout] 104 |         pub residue_idx: usize,
[INFO] [stdout]     |             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `residue_idx` is never read
[INFO] [stdout]    --> src/visualise.rs:110:13
[INFO] [stdout]     |
[INFO] [stdout] 109 |     pub struct BackboneBond {
[INFO] [stdout]     |                ------------ field in this struct
[INFO] [stdout] 110 |         pub residue_idx: usize,
[INFO] [stdout]     |             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 25s
[INFO] running `Command { std: "docker" "inspect" "76ad37da1859111070d975f5a4d9467019ff423c9c849c3d2f4863d6473a550c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "76ad37da1859111070d975f5a4d9467019ff423c9c849c3d2f4863d6473a550c", kill_on_drop: false }`
[INFO] [stdout] 76ad37da1859111070d975f5a4d9467019ff423c9c849c3d2f4863d6473a550c
