[INFO] cloning repository https://github.com/pangenome/allwave [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/pangenome/allwave" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpangenome%2Fallwave", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpangenome%2Fallwave'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] cfdb9bbda552a4578284b9074404d03f2161df83 [INFO] checking pangenome/allwave against try#5ec4d3b0c83717313176eefa7d71e9d36dc83355 for pr-155501 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpangenome%2Fallwave" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/pangenome/allwave [INFO] finished tweaking git repo https://github.com/pangenome/allwave [INFO] tweaked toml for git repo https://github.com/pangenome/allwave written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/pangenome/allwave on toolchain 5ec4d3b0c83717313176eefa7d71e9d36dc83355 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5ec4d3b0c83717313176eefa7d71e9d36dc83355" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/pangenome/allwave already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+5ec4d3b0c83717313176eefa7d71e9d36dc83355" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+5ec4d3b0c83717313176eefa7d71e9d36dc83355" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 535a43fd379d914862e67980ecb77f3e521c73b9cbeaad934058a1336126fd6b [INFO] running `Command { std: "docker" "start" "-a" "535a43fd379d914862e67980ecb77f3e521c73b9cbeaad934058a1336126fd6b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "535a43fd379d914862e67980ecb77f3e521c73b9cbeaad934058a1336126fd6b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "535a43fd379d914862e67980ecb77f3e521c73b9cbeaad934058a1336126fd6b", kill_on_drop: false }` [INFO] [stdout] 535a43fd379d914862e67980ecb77f3e521c73b9cbeaad934058a1336126fd6b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+5ec4d3b0c83717313176eefa7d71e9d36dc83355" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 48a58ea327b1313ce9aa7f74ec4af11dbbdc974a2d094227220869c8962b05c4 [INFO] running `Command { std: "docker" "start" "-a" "48a58ea327b1313ce9aa7f74ec4af11dbbdc974a2d094227220869c8962b05c4", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Checking cfg-if v1.0.1 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Checking memchr v2.7.5 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling zerocopy v0.8.26 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling cc v1.2.29 [INFO] [stderr] Compiling nom v5.1.3 [INFO] [stderr] Checking zlib-rs v0.5.1 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking bytemuck v1.23.1 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling rustversion v1.0.21 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling libloading v0.8.8 [INFO] [stderr] Checking libz-rs-sys v0.5.1 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Checking flate2 v1.1.2 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling bindgen v0.55.1 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Compiling which v3.1.1 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling cexpr v0.4.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Compiling shlex v0.1.1 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking anstyle-parse v0.2.7 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Checking bstr v1.12.0 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking bytes v1.10.1 [INFO] [stderr] Checking colorchoice v1.0.4 [INFO] [stderr] Compiling rustix v1.0.8 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Checking hashbrown v0.15.4 [INFO] [stderr] Checking anstyle-query v1.1.3 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking anstyle v1.0.11 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Checking noodles-bgzf v0.37.0 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking anstream v0.6.19 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking noodles-core v0.17.0 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Checking linux-raw-sys v0.9.4 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking clap_lex v0.7.5 [INFO] [stderr] Checking unicode-width v0.2.1 [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Checking bitflags v2.9.1 [INFO] [stderr] Compiling lib_wfa2 v0.1.0 (https://github.com/ekg/lib_wfa2?rev=819b82cd842aabedcb962fd5b82380fe454234f6#819b82cd) [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking regex v1.11.1 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking indexmap v2.10.0 [INFO] [stderr] Checking noodles-fasta v0.50.0 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking clap_builder v4.5.41 [INFO] [stderr] Checking needletail v0.4.1 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] error: failed to run custom build command for `lib_wfa2 v0.1.0 (https://github.com/ekg/lib_wfa2?rev=819b82cd842aabedcb962fd5b82380fe454234f6#819b82cd)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/lib_wfa2-410ced50de965f07/build-script-build` (exit status: 101) [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] thread 'main' (1761) panicked at /opt/rustwide/cargo-home/git/checkouts/lib_wfa2-c3eee27b1ab09b91/819b82c/build.rs:90:9: [INFO] [stderr] Failed to build WFA2-lib: Make failed: mkdir: cannot create directory 'bin': Read-only file system [INFO] [stderr] mkdir: cannot create directory 'build': Read-only file system [INFO] [stderr] mkdir: cannot create directory 'build': Read-only file system [INFO] [stderr] mkdir: cannot create directory 'lib': Read-only file system [INFO] [stderr] make: *** [Makefile:70: setup] Error 1 [INFO] [stderr] [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x58f434e151ca - std[6f277ff5891b1f2c]::backtrace_rs::backtrace::libunwind::trace [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x58f434e151ca - std[6f277ff5891b1f2c]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x58f434e151ca - std[6f277ff5891b1f2c]::sys::backtrace::_print_fmt [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/sys/backtrace.rs:74:9 [INFO] [stderr] 3: 0x58f434e151ca - <::print::DisplayBacktrace as core[7866fe383a43c663]::fmt::Display>::fmt [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/sys/backtrace.rs:44:26 [INFO] [stderr] 4: 0x58f434e2679a - ::fmt [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/core/src/fmt/rt.rs:152:76 [INFO] [stderr] 5: 0x58f434e2679a - core[7866fe383a43c663]::fmt::write [INFO] [stderr] 6: 0x58f434e192d2 - std[6f277ff5891b1f2c]::io::default_write_fmt:: [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/io/mod.rs:621:11 [INFO] [stderr] 7: 0x58f434e192d2 - ::write_fmt [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/io/mod.rs:1976:13 [INFO] [stderr] 8: 0x58f434dfaa9f - ::print [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/sys/backtrace.rs:47:9 [INFO] [stderr] 9: 0x58f434dfaa9f - std[6f277ff5891b1f2c]::panicking::default_hook::{closure#0} [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:292:27 [INFO] [stderr] 10: 0x58f434e10e31 - std[6f277ff5891b1f2c]::panicking::default_hook [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:319:9 [INFO] [stderr] 11: 0x58f434e10feb - std[6f277ff5891b1f2c]::panicking::panic_with_hook [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:825:13 [INFO] [stderr] 12: 0x58f434dfab58 - std[6f277ff5891b1f2c]::panicking::panic_handler::{closure#0} [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:698:13 [INFO] [stderr] 13: 0x58f434df2709 - std[6f277ff5891b1f2c]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/sys/backtrace.rs:182:18 [INFO] [stderr] 14: 0x58f434dfb3bd - __rustc[43b2ed8765c84870]::rust_begin_unwind [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:689:5 [INFO] [stderr] 15: 0x58f434e26e8c - core[7866fe383a43c663]::panicking::panic_fmt [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/core/src/panicking.rs:80:14 [INFO] [stderr] 16: 0x58f434de0ad9 - build_script_build[13e5e1bc4a22eb91]::main [INFO] [stderr] 17: 0x58f434de3c43 - >::call_once [INFO] [stderr] 18: 0x58f434de01b6 - std[6f277ff5891b1f2c]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stderr] 19: 0x58f434de06a9 - std[6f277ff5891b1f2c]::rt::lang_start::<()>::{closure#0} [INFO] [stderr] 20: 0x58f434e101b7 - <&dyn core[7866fe383a43c663]::ops::function::Fn<(), Output = i32> + core[7866fe383a43c663]::panic::unwind_safe::RefUnwindSafe + core[7866fe383a43c663]::marker::Sync as core[7866fe383a43c663]::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 21: 0x58f434e101b7 - std[6f277ff5891b1f2c]::panicking::catch_unwind::do_call::<&dyn core[7866fe383a43c663]::ops::function::Fn<(), Output = i32> + core[7866fe383a43c663]::panic::unwind_safe::RefUnwindSafe + core[7866fe383a43c663]::marker::Sync, i32> [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:581:40 [INFO] [stderr] 22: 0x58f434e101b7 - std[6f277ff5891b1f2c]::panicking::catch_unwind:: + core[7866fe383a43c663]::panic::unwind_safe::RefUnwindSafe + core[7866fe383a43c663]::marker::Sync> [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:544:19 [INFO] [stderr] 23: 0x58f434e101b7 - std[6f277ff5891b1f2c]::panic::catch_unwind::<&dyn core[7866fe383a43c663]::ops::function::Fn<(), Output = i32> + core[7866fe383a43c663]::panic::unwind_safe::RefUnwindSafe + core[7866fe383a43c663]::marker::Sync, i32> [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x58f434e101b7 - std[6f277ff5891b1f2c]::rt::lang_start_internal::{closure#0} [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x58f434e101b7 - std[6f277ff5891b1f2c]::panicking::catch_unwind::do_call:: [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:581:40 [INFO] [stderr] 26: 0x58f434e101b7 - std[6f277ff5891b1f2c]::panicking::catch_unwind:: [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panicking.rs:544:19 [INFO] [stderr] 27: 0x58f434e101b7 - std[6f277ff5891b1f2c]::panic::catch_unwind:: [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x58f434e101b7 - std[6f277ff5891b1f2c]::rt::lang_start_internal [INFO] [stderr] at /rustc/5ec4d3b0c83717313176eefa7d71e9d36dc83355/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x58f434ddf881 - std[6f277ff5891b1f2c]::rt::lang_start::<()> [INFO] [stderr] 30: 0x58f434de3fe5 - main [INFO] [stderr] 31: 0x78f51f8641ca - [INFO] [stderr] 32: 0x78f51f86428b - __libc_start_main [INFO] [stderr] 33: 0x58f434ddeb95 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "48a58ea327b1313ce9aa7f74ec4af11dbbdc974a2d094227220869c8962b05c4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "48a58ea327b1313ce9aa7f74ec4af11dbbdc974a2d094227220869c8962b05c4", kill_on_drop: false }` [INFO] [stdout] 48a58ea327b1313ce9aa7f74ec4af11dbbdc974a2d094227220869c8962b05c4