[INFO] cloning repository https://github.com/COMBINE-lab/piscem
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/piscem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5b285f3c09d1b5ddf19a019fad745ee7a1d6b6a1
[INFO] checking COMBINE-lab/piscem against master#540f43a224317d894a9a0710a8d67704f179a33c for pr-155193
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] finished tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] tweaked toml for git repo https://github.com/COMBINE-lab/piscem written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/COMBINE-lab/piscem on toolchain 540f43a224317d894a9a0710a8d67704f179a33c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+540f43a224317d894a9a0710a8d67704f179a33c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/COMBINE-lab/piscem already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+540f43a224317d894a9a0710a8d67704f179a33c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded path-tools v0.1.0
[INFO] [stderr]   Downloaded buffer-redux v1.1.0
[INFO] [stderr]   Downloaded sha2-asm v0.6.4
[INFO] [stderr]   Downloaded stable_try_trait_v2 v1.75.1
[INFO] [stderr]   Downloaded chiapos-chacha8 v0.1.0
[INFO] [stderr]   Downloaded mimalloc v0.1.48
[INFO] [stderr]   Downloaded binout v0.3.1
[INFO] [stderr]   Downloaded lender-derive v0.1.3
[INFO] [stderr]   Downloaded mem_dbg-derive v0.3.0
[INFO] [stderr]   Downloaded wyhash v0.5.0
[INFO] [stderr]   Downloaded dyn_size_of v0.4.5
[INFO] [stderr]   Downloaded mem_dbg v0.3.4
[INFO] [stderr]   Downloaded mem_dbg-derive v0.2.1
[INFO] [stderr]   Downloaded ph v0.11.0
[INFO] [stderr]   Downloaded ph-temp v0.12.0
[INFO] [stderr]   Downloaded lender v0.6.2
[INFO] [stderr]   Downloaded paraseq v0.4.8
[INFO] [stderr]   Downloaded chumsky v0.12.0
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded voracious_radix_sort v1.2.0
[INFO] [stderr]   Downloaded ensure_simd v0.1.0
[INFO] [stderr]   Downloaded epserde v0.12.4
[INFO] [stderr]   Downloaded tiny-dict v0.5.0
[INFO] [stderr]   Downloaded libmimalloc-sys v0.1.44
[INFO] [stderr]   Downloaded piscem-rs v0.4.0
[INFO] [stderr]   Downloaded cf1-rs v0.3.1
[INFO] [stderr]   Downloaded sux v0.13.1
[INFO] [stderr]   Downloaded prepare_fasta v0.2.0
[INFO] [stderr]   Downloaded packed-seq v4.4.2
[INFO] [stderr]   Downloaded niffler v3.0.0
[INFO] [stderr]   Downloaded rapidhash v1.4.0
[INFO] [stderr]   Downloaded sshash-lib v0.5.0
[INFO] [stderr]   Downloaded rapidhash v4.4.0
[INFO] [stderr]   Downloaded ambassador v0.5.0
[INFO] [stderr]   Downloaded impl-tools v0.11.4
[INFO] [stderr]   Downloaded lambert_w v1.2.34
[INFO] [stderr]   Downloaded mem_dbg v0.4.0
[INFO] [stderr]   Downloaded rdst v0.20.14
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded ariadne v0.5.1
[INFO] [stderr]   Downloaded bitm v0.5.2
[INFO] [stderr]   Downloaded pluralizer v0.5.0
[INFO] [stderr]   Downloaded impl-tools-lib v0.11.4
[INFO] [stderr]   Downloaded num-primitive v0.2.1
[INFO] [stderr]   Downloaded seq-hash v0.1.2
[INFO] [stderr]   Downloaded simd-minimizers v2.3.1
[INFO] [stderr]   Downloaded seq_geom_parser v1.1.0
[INFO] [stderr]   Downloaded seedable_hash v0.2.3
[INFO] [stderr]   Downloaded atomic-primitive v0.1.3
[INFO] [stderr]   Downloaded derive_setters v0.1.9
[INFO] [stderr]   Downloaded dsi-progress-logger v0.8.2
[INFO] [stderr]   Downloaded maybe-dangling v0.1.2
[INFO] [stderr]   Downloaded value-traits v0.2.1
[INFO] [stderr]   Downloaded epserde-derive v0.12.4
[INFO] [stderr]   Downloaded block-pseudorand v0.1.2
[INFO] [stderr]   Downloaded thread-priority v3.0.0
[INFO] [stderr]   Downloaded partition v0.1.2
[INFO] [stderr]   Downloaded tikv-jemallocator v0.5.4
[INFO] [stderr]   Downloaded value-traits-derive v0.2.1
[INFO] [stderr]   Downloaded arbitrary-chunks v0.4.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+540f43a224317d894a9a0710a8d67704f179a33c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5add5375f78725a55da42edb7dcffbbe796daa35d31635cf6a32c9a35ffeedfe
[INFO] running `Command { std: "docker" "start" "-a" "5add5375f78725a55da42edb7dcffbbe796daa35d31635cf6a32c9a35ffeedfe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5add5375f78725a55da42edb7dcffbbe796daa35d31635cf6a32c9a35ffeedfe", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5add5375f78725a55da42edb7dcffbbe796daa35d31635cf6a32c9a35ffeedfe", kill_on_drop: false }`
[INFO] [stdout] 5add5375f78725a55da42edb7dcffbbe796daa35d31635cf6a32c9a35ffeedfe
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+540f43a224317d894a9a0710a8d67704f179a33c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a7ccbe336889a38f6ade15eb4b99a152f721fd223908cba73304bb151ffdbb0a
[INFO] running `Command { std: "docker" "start" "-a" "a7ccbe336889a38f6ade15eb4b99a152f721fd223908cba73304bb151ffdbb0a", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.47
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking zlib-rs v0.6.3
[INFO] [stderr]    Compiling object v0.37.3
[INFO] [stderr]    Compiling zerocopy-derive v0.8.47
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]     Checking arrayvec v0.7.6
[INFO] [stderr]    Compiling enum-as-inner v0.6.1
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Checking wyhash v0.5.0
[INFO] [stderr]     Checking combine v4.6.7
[INFO] [stderr]    Compiling darling_core v0.21.3
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling cc v1.2.57
[INFO] [stderr]     Checking dyn_size_of v0.4.5
[INFO] [stderr]     Checking rapidhash v1.4.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking seedable_hash v0.2.3
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking getrandom v0.4.2
[INFO] [stderr]     Checking bitm v0.5.2
[INFO] [stderr]     Checking voracious_radix_sort v1.2.0
[INFO] [stderr]     Checking env_filter v1.0.0
[INFO] [stderr]    Compiling mem_dbg-derive v0.3.0
[INFO] [stderr]     Checking buffer-redux v1.1.0
[INFO] [stderr]     Checking binout v0.3.1
[INFO] [stderr]     Checking jiff v0.2.23
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]    Compiling impl-tools-lib v0.11.4
[INFO] [stderr]     Checking num-format v0.4.4
[INFO] [stderr]     Checking pluralizer v0.5.0
[INFO] [stderr]    Compiling lender-derive v0.1.3
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]    Compiling darling_core v0.23.0
[INFO] [stderr]    Compiling mem_dbg-derive v0.2.1
[INFO] [stderr]    Compiling sealed v0.6.0
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking sysctl v0.6.0
[INFO] [stderr]    Compiling epserde-derive v0.12.4
[INFO] [stderr]    Compiling value-traits-derive v0.2.1
[INFO] [stderr]    Compiling clap_derive v4.6.0
[INFO] [stderr]     Checking sysinfo v0.35.2
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling stacker v0.1.23
[INFO] [stderr]     Checking aliasable v0.1.3
[INFO] [stderr]     Checking maybe-dangling v0.1.2
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]     Checking terminal_size v0.4.3
[INFO] [stderr]     Checking stable_try_trait_v2 v1.75.1
[INFO] [stderr]     Checking partition v0.1.2
[INFO] [stderr]     Checking arbitrary-chunks v0.4.1
[INFO] [stderr]     Checking clap_builder v4.6.0
[INFO] [stderr]     Checking rdst v0.20.14
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking lender v0.6.2
[INFO] [stderr]    Compiling impl-tools v0.11.4
[INFO] [stderr]     Checking value-traits v0.2.1
[INFO] [stderr]     Checking mem_dbg v0.3.4
[INFO] [stderr]     Checking dsi-progress-logger v0.8.2
[INFO] [stderr]    Compiling libmimalloc-sys v0.1.44
[INFO] [stderr]    Compiling sha2-asm v0.6.4
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking lambert_w v1.2.34
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking mmap-rs v0.7.0
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking rand v0.10.0
[INFO] [stderr]    Compiling ambassador v0.5.0
[INFO] [stderr]    Compiling serde_spanned v0.6.9
[INFO] [stderr]    Compiling toml_datetime v0.6.11
[INFO] [stderr]     Checking thread-priority v3.0.0
[INFO] [stderr]    Compiling toml_write v0.1.2
[INFO] [stderr]     Checking ensure_simd v0.1.0
[INFO] [stderr]     Checking mem_dbg v0.4.0
[INFO] [stderr]    Compiling darling_macro v0.21.3
[INFO] [stderr]     Checking num-primitive v0.2.1
[INFO] [stderr]     Checking atomic-primitive v0.1.3
[INFO] [stderr]    Compiling toml_edit v0.22.27
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]     Checking clap v4.6.0
[INFO] [stderr]     Checking bzip2 v0.5.2
[INFO] [stderr]    Compiling darling v0.21.3
[INFO] [stderr]    Compiling derive_setters v0.1.9
[INFO] [stderr]     Checking epserde v0.12.4
[INFO] [stderr]    Compiling derivative v2.2.0
[INFO] [stderr]     Checking ph-temp v0.12.0
[INFO] [stderr]     Checking bgzip v0.3.1
[INFO] [stderr]     Checking rapidhash v4.4.0
[INFO] [stderr]     Checking env_logger v0.11.9
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]     Checking memmap2 v0.9.10
[INFO] [stderr]    Compiling ar_archive_writer v0.5.1
[INFO] [stderr]     Checking ariadne v0.5.1
[INFO] [stderr]     Checking tracing-subscriber v0.3.23
[INFO] [stderr]     Checking console v0.16.3
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]    Compiling darling_macro v0.23.0
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking unit-prefix v0.5.2
[INFO] [stderr]     Checking dashmap v6.1.0
[INFO] [stderr]     Checking indicatif v0.18.4
[INFO] [stderr]     Checking sha2 v0.10.9
[INFO] [stderr]     Checking crossbeam v0.8.4
[INFO] [stderr]     Checking ph v0.11.0
[INFO] [stderr]     Checking path-tools v0.1.0
[INFO] [stderr]    Compiling darling v0.23.0
[INFO] [stderr]    Compiling psm v0.1.30
[INFO] [stderr]    Compiling bon-macros v3.9.1
[INFO] [stderr]     Checking mimalloc v0.1.48
[INFO] [stderr]     Checking chumsky v0.12.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling toml v0.8.23
[INFO] [stderr]     Checking liblzma v0.3.6
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]    Compiling piscem v0.19.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking packed-seq v4.4.2
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking needletail v0.6.3
[INFO] [stderr]     Checking sux v0.13.1
[INFO] [stderr]     Checking niffler v3.0.0
[INFO] [stderr]     Checking seq-hash v0.1.2
[INFO] [stderr]     Checking paraseq v0.4.8
[INFO] [stderr]     Checking prepare_fasta v0.2.0
[INFO] [stderr]     Checking simd-minimizers v2.3.1
[INFO] [stderr] warning: use `#[epserde(deep_copy)]` instead of `#[epserde_deep_copy]` on type `FuseLge3Shards`
[INFO] [stderr] warning: use `#[epserde(deep_copy)]` instead of `#[epserde_deep_copy]` on type `FuseLge3NoShards`
[INFO] [stderr] warning: use `#[epserde(deep_copy)]` instead of `#[epserde_deep_copy]` on type `FuseLge3FullSigs`
[INFO] [stderr] warning: use `#[epserde(zero_copy)]` instead of `#[epserde(zero_copy)]` on type `Block32Counters`
[INFO] [stderr] warning: use `#[epserde(zero_copy)]` instead of `#[epserde(zero_copy)]` on type `BlockCounters`
[INFO] [stderr] warning: use `#[epserde(zero_copy)]` instead of `#[epserde(zero_copy)]` on type `EmptyVal`
[INFO] [stderr]     Checking bon v3.9.1
[INFO] [stderr]     Checking cf1-rs v0.3.1
[INFO] [stderr]     Checking seq_geom_parser v1.1.0
[INFO] [stderr]     Checking sshash-lib v0.5.0
[INFO] [stderr]     Checking tiny-dict v0.5.0
[INFO] [stderr]     Checking piscem-rs v0.4.0
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 05s
[INFO] running `Command { std: "docker" "inspect" "a7ccbe336889a38f6ade15eb4b99a152f721fd223908cba73304bb151ffdbb0a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a7ccbe336889a38f6ade15eb4b99a152f721fd223908cba73304bb151ffdbb0a", kill_on_drop: false }`
[INFO] [stdout] a7ccbe336889a38f6ade15eb4b99a152f721fd223908cba73304bb151ffdbb0a
