[INFO] fetching crate deepbiop 0.1.16...
[INFO] checking deepbiop-0.1.16 against master#540f43a224317d894a9a0710a8d67704f179a33c for pr-155193
[INFO] extracting crate deepbiop 0.1.16 into /workspace/builds/worker-4-tc1/source
[INFO] started tweaking crates.io crate deepbiop 0.1.16
[INFO] finished tweaking crates.io crate deepbiop 0.1.16
[INFO] tweaked toml for crates.io crate deepbiop 0.1.16 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop 0.1.16 on toolchain 540f43a224317d894a9a0710a8d67704f179a33c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+540f43a224317d894a9a0710a8d67704f179a33c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop 0.1.16 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+540f43a224317d894a9a0710a8d67704f179a33c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unic-emoji-char v0.9.0
[INFO] [stderr]   Downloaded unicode_names2_generator v1.3.0
[INFO] [stderr]   Downloaded rustpython-parser v0.4.0
[INFO] [stderr]   Downloaded malachite v0.4.22
[INFO] [stderr]   Downloaded pyo3-macros v0.27.1
[INFO] [stderr]   Downloaded is-macro v0.3.7
[INFO] [stderr]   Downloaded rustpython-parser-core v0.4.0
[INFO] [stderr]   Downloaded unic-ucd-ident v0.9.0
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.17.0
[INFO] [stderr]   Downloaded deepbiop-core v0.1.16
[INFO] [stderr]   Downloaded arrow-csv v57.0.0
[INFO] [stderr]   Downloaded arrow-arith v57.0.0
[INFO] [stderr]   Downloaded arrow-ord v57.0.0
[INFO] [stderr]   Downloaded deepbiop-fa v0.1.16
[INFO] [stderr]   Downloaded arrow v57.0.0
[INFO] [stderr]   Downloaded noodles-bam v0.83.0
[INFO] [stderr]   Downloaded noodles-sam v0.79.0
[INFO] [stderr]   Downloaded arrow-ipc v57.0.0
[INFO] [stderr]   Downloaded arrow-cast v57.0.0
[INFO] [stderr]   Downloaded numpy v0.27.0
[INFO] [stderr]   Downloaded candle-core v0.9.2-alpha.1
[INFO] [stderr]   Downloaded arrow-array v57.0.0
[INFO] [stderr]   Downloaded unicode_names2 v1.3.0
[INFO] [stderr]   Downloaded malachite-q v0.4.22
[INFO] [stderr]   Downloaded pyo3-ffi v0.27.1
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.27.1
[INFO] [stderr]   Downloaded arrow-buffer v57.0.0
[INFO] [stderr]   Downloaded arrow-select v57.0.0
[INFO] [stderr]   Downloaded pyo3-build-config v0.27.1
[INFO] [stderr]   Downloaded arrow-json v57.0.0
[INFO] [stderr]   Downloaded arrow-data v57.0.0
[INFO] [stderr]   Downloaded arrow-schema v57.0.0
[INFO] [stderr]   Downloaded arrow-row v57.0.0
[INFO] [stderr]   Downloaded arrow-string v57.0.0
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded parquet v57.0.0
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.43.0
[INFO] [stderr]   Downloaded lexical v7.0.5
[INFO] [stderr]   Downloaded malachite-base v0.4.22
[INFO] [stderr]   Downloaded noodles v0.101.0
[INFO] [stderr]   Downloaded malachite-bigint v0.2.3
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.16
[INFO] [stderr]   Downloaded noodles-fasta v0.56.0
[INFO] [stderr]   Downloaded noodles-fastq v0.21.0
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded deepbiop-bam v0.1.16
[INFO] [stderr]   Downloaded noodles-csi v0.51.0
[INFO] [stderr]   Downloaded rustpython-parser-vendored v0.4.0
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.17.0
[INFO] [stderr]   Downloaded deepbiop-fq v0.1.16
[INFO] [stderr]   Downloaded malachite-nz v0.4.22
[INFO] [stderr]   Downloaded pyo3 v0.27.1
[INFO] [stderr]   Downloaded rustpython-ast v0.4.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+540f43a224317d894a9a0710a8d67704f179a33c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e8a731e0d7b346fdc855e92e5510316995dd5b7a082b4175a90baff2a4ec904f
[INFO] running `Command { std: "docker" "start" "-a" "e8a731e0d7b346fdc855e92e5510316995dd5b7a082b4175a90baff2a4ec904f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e8a731e0d7b346fdc855e92e5510316995dd5b7a082b4175a90baff2a4ec904f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e8a731e0d7b346fdc855e92e5510316995dd5b7a082b4175a90baff2a4ec904f", kill_on_drop: false }`
[INFO] [stdout] e8a731e0d7b346fdc855e92e5510316995dd5b7a082b4175a90baff2a4ec904f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+540f43a224317d894a9a0710a8d67704f179a33c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 44b72d799659f8808373e12c00e5f29612bb2ba14519442ce1be3cf0a8ad938a
[INFO] running `Command { std: "docker" "start" "-a" "44b72d799659f8808373e12c00e5f29612bb2ba14519442ce1be3cf0a8ad938a", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]     Checking hashbrown v0.16.0
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling siphasher v1.0.1
[INFO] [stderr]     Checking arrow-schema v57.0.0
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]    Compiling syn v2.0.108
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking simd-adler32 v0.3.7
[INFO] [stderr]     Checking reborrow v0.5.5
[INFO] [stderr]     Checking indexmap v2.12.0
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling pyo3-build-config v0.27.1
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling malachite-nz v0.4.22
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling tiny-keccak v2.0.2
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]    Compiling cc v1.2.44
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling rustpython-parser-vendored v0.4.0
[INFO] [stderr]    Compiling flatbuffers v25.9.23
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]     Checking flate2 v1.1.5
[INFO] [stderr]    Compiling toml_edit v0.23.7
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking alloc-no-stdlib v2.0.4
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]     Checking alloc-stdlib v0.2.2
[INFO] [stderr]     Checking memoffset v0.9.1
[INFO] [stderr]     Checking noodles-bgzf v0.43.0
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
[INFO] [stderr]    Compiling unic-ucd-ident v0.9.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]    Compiling malachite-base v0.4.22
[INFO] [stderr]    Compiling proc-macro-crate v3.4.0
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]     Checking toml_parser v1.0.4
[INFO] [stderr]     Checking brotli-decompressor v5.0.0
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking toml_datetime v0.7.3
[INFO] [stderr]     Checking serde_spanned v1.0.3
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling pyo3-ffi v0.27.1
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.1
[INFO] [stderr]    Compiling pyo3 v0.27.1
[INFO] [stderr]    Compiling numpy v0.27.0
[INFO] [stderr]     Checking toml_writer v1.0.4
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]     Checking integer-encoding v3.0.4
[INFO] [stderr]     Checking rustc-hash v2.1.1
[INFO] [stderr]     Checking lz4_flex v0.11.5
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking toml v0.9.8
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking lexical v7.0.5
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]     Checking brotli v8.0.2
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking noodles-core v0.18.0
[INFO] [stderr]     Checking noodles-fastq v0.21.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking noodles-csi v0.51.0
[INFO] [stderr]     Checking noodles-fasta v0.56.0
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]     Checking noodles-sam v0.79.0
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling derive_more-impl v1.0.0
[INFO] [stderr]    Compiling is-macro v0.3.7
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling rustpython-parser-core v0.4.0
[INFO] [stderr]    Compiling num_enum_derive v0.7.5
[INFO] [stderr]    Compiling tracing-attributes v0.1.30
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/540f43a224317d894a9a0710a8d67704f179a33c/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-8.0.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "billing", "default", "disable-timer", "disallow_large_window_size", "external-literal-probability", "ffi-api", "float64", "floating_point_context_mixing", "no-stdlib-ffi-binding", "pass-through-ffi-panics", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=eef80c0e40b93914 -C extra-filename=-b72f45b15f1fe70b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-03123bb854b05c34.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-90e33f06fd5154d7.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-64305c152875789b.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `pyo3-macros-backend` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/540f43a224317d894a9a0710a8d67704f179a33c/bin/rustc --crate-name pyo3_macros_backend --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-macros-backend-0.27.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --warn=rust_2018_idioms '--warn=clippy::useless_transmute' '--warn=clippy::used_underscore_binding' --warn=unused_lifetimes --warn=unsafe_op_in_unsafe_fn '--warn=clippy::unnecessary_wraps' '--allow=clippy::undocumented_unsafe_blocks' '--warn=clippy::todo' --warn=rust_2021_prelude_collisions '--warn=clippy::manual_ok_or' '--warn=clippy::manual_assert' '--warn=clippy::let_unit_value' --warn=invalid_doc_attributes '--warn=clippy::flat_map_option' '--warn=clippy::filter_map_next' '--warn=clippy::explicit_iter_loop' '--warn=clippy::explicit_into_iter_loop' --warn=elided_lifetimes_in_paths '--warn=clippy::dbg_macro' '--warn=clippy::checked_conversions' '--warn=rustdoc::broken_intra_doc_links' '--warn=rustdoc::bare_urls' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("experimental-async", "experimental-inspect"))' -C metadata=29b34567be5c9a7d -C extra-filename=-e6b554230b9cfc43 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern heck=/opt/rustwide/target/debug/deps/libheck-bbd17e574ccdad2f.rmeta --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-fbba84f8e4cdcc21.rmeta --extern pyo3_build_config=/opt/rustwide/target/debug/deps/libpyo3_build_config-72352651971176a4.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-ee49ad0731cb320e.rmeta --extern syn=/opt/rustwide/target/debug/deps/libsyn-12f9751c6020b201.rmeta --cap-lints allow --cap-lints=forbid --cfg return_position_impl_trait_in_traits --cfg c_str_lit --cfg diagnostic_namespace --cfg io_error_more --cfg mut_ref_in_const_fn --cfg fn_ptr_eq --cfg from_bytes_with_nul_error --check-cfg 'cfg(Py_LIMITED_API)' --check-cfg 'cfg(Py_GIL_DISABLED)' --check-cfg 'cfg(PyPy)' --check-cfg 'cfg(GraalPy)' --check-cfg 'cfg(py_sys_config, values("Py_DEBUG", "Py_REF_DEBUG", "Py_TRACE_REFS", "COUNT_ALLOCS"))' --check-cfg 'cfg(pyo3_disable_reference_pool)' --check-cfg 'cfg(pyo3_leak_on_drop_without_reference_pool)' --check-cfg 'cfg(Py_3_7)' --check-cfg 'cfg(Py_3_8)' --check-cfg 'cfg(Py_3_9)' --check-cfg 'cfg(Py_3_10)' --check-cfg 'cfg(Py_3_11)' --check-cfg 'cfg(Py_3_12)' --check-cfg 'cfg(Py_3_13)' --check-cfg 'cfg(Py_3_14)' --check-cfg 'cfg(Py_3_15)' --check-cfg 'cfg(return_position_impl_trait_in_traits)' --check-cfg 'cfg(c_str_lit)' --check-cfg 'cfg(diagnostic_namespace)' --check-cfg 'cfg(io_error_more)' --check-cfg 'cfg(mut_ref_in_const_fn)' --check-cfg 'cfg(fn_ptr_eq)' --check-cfg 'cfg(from_bytes_with_nul_error)'` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "44b72d799659f8808373e12c00e5f29612bb2ba14519442ce1be3cf0a8ad938a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "44b72d799659f8808373e12c00e5f29612bb2ba14519442ce1be3cf0a8ad938a", kill_on_drop: false }`
[INFO] [stdout] 44b72d799659f8808373e12c00e5f29612bb2ba14519442ce1be3cf0a8ad938a
