[INFO] fetching crate kira-organelle 0.2.0...
[INFO] testing kira-organelle-0.2.0 against master#f9988fefd3add01f414f52b414308e7872622fee for pr-155114
[INFO] extracting crate kira-organelle 0.2.0 into /workspace/builds/worker-4-tc1/source
[INFO] removed /workspace/builds/worker-4-tc1/source/.cargo/config.toml
[INFO] started tweaking crates.io crate kira-organelle 0.2.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate kira-organelle 0.2.0
[INFO] tweaked toml for crates.io crate kira-organelle 0.2.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate kira-organelle 0.2.0 on toolchain f9988fefd3add01f414f52b414308e7872622fee
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate kira-organelle 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded sprs v0.11.4
[INFO] [stderr]   Downloaded kira-shared-sc-cache v0.1.1
[INFO] [stderr]   Downloaded alga v0.9.3
[INFO] [stderr]   Downloaded kira-mitoqc v0.1.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6bf854b4e8177e32859534e3192fb27cf65a968d33203afea2ab075c81162403
[INFO] running `Command { std: "docker" "start" "-a" "6bf854b4e8177e32859534e3192fb27cf65a968d33203afea2ab075c81162403", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6bf854b4e8177e32859534e3192fb27cf65a968d33203afea2ab075c81162403", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6bf854b4e8177e32859534e3192fb27cf65a968d33203afea2ab075c81162403", kill_on_drop: false }`
[INFO] [stdout] 6bf854b4e8177e32859534e3192fb27cf65a968d33203afea2ab075c81162403
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 430dec7fa1dcad91eae1224c0005a229633f415b463370795ad3ae64b995f0d9
[INFO] running `Command { std: "docker" "start" "-a" "430dec7fa1dcad91eae1224c0005a229633f415b463370795ad3ae64b995f0d9", kill_on_drop: false }`
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling tracing-core v0.1.36
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling zmij v1.0.19
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.9
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling winnow v0.7.14
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling time v0.3.47
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling memmap2 v0.9.10
[INFO] [stderr]    Compiling clap_builder v4.5.57
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling tracing-log v0.2.0
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling ndarray v0.17.2
[INFO] [stderr]    Compiling matchers v0.2.0
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling kira-shared-sc-cache v0.1.1
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling tracing v0.1.44
[INFO] [stderr]    Compiling tracing-subscriber v0.3.22
[INFO] [stderr]    Compiling clap v4.5.57
[INFO] [stderr]    Compiling sprs v0.11.4
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling serde_spanned v0.6.9
[INFO] [stderr]    Compiling toml_datetime v0.6.11
[INFO] [stderr]    Compiling toml_edit v0.22.27
[INFO] [stderr]    Compiling toml v0.8.23
[INFO] [stderr]    Compiling kira-mitoqc v0.1.2
[INFO] [stderr]    Compiling kira-organelle v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: function `resolve_shared_cache_bin_path` is never used
[INFO] [stdout]    --> src/run/exec.rs:510:4
[INFO] [stdout]     |
[INFO] [stdout] 510 | fn resolve_shared_cache_bin_path(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `collect_shared_cache_bin_candidates` is never used
[INFO] [stdout]    --> src/run/exec.rs:551:4
[INFO] [stdout]     |
[INFO] [stdout] 551 | fn collect_shared_cache_bin_candidates(dir: &Path) -> Result<Vec<PathBuf>, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `refresh_mito_shared_cache` is never used
[INFO] [stdout]    --> src/run/exec.rs:601:4
[INFO] [stdout]     |
[INFO] [stdout] 601 | fn refresh_mito_shared_cache(step: &ToolStep, out_root: &Path) -> Result<(), String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 55.32s
[INFO] running `Command { std: "docker" "inspect" "430dec7fa1dcad91eae1224c0005a229633f415b463370795ad3ae64b995f0d9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "430dec7fa1dcad91eae1224c0005a229633f415b463370795ad3ae64b995f0d9", kill_on_drop: false }`
[INFO] [stdout] 430dec7fa1dcad91eae1224c0005a229633f415b463370795ad3ae64b995f0d9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5544e0435a179020d80abc12b465b817e00a46556b00654af7c68c0a9a21ab02
[INFO] running `Command { std: "docker" "start" "-a" "5544e0435a179020d80abc12b465b817e00a46556b00654af7c68c0a9a21ab02", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling zerocopy-derive v0.8.39
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling is-terminal v0.4.17
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling toml_datetime v0.6.11
[INFO] [stderr]    Compiling serde_spanned v0.6.9
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling zerocopy v0.8.39
[INFO] [stderr]    Compiling toml_edit v0.22.27
[INFO] [stderr]    Compiling tempfile v3.24.0
[INFO] [stderr]    Compiling sprs v0.11.4
[INFO] [stderr]    Compiling matchers v0.2.0
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling tracing-subscriber v0.3.22
[INFO] [stderr]    Compiling toml v0.8.23
[INFO] [stderr]    Compiling kira-mitoqc v0.1.2
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling kira-organelle v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: function `resolve_shared_cache_bin_path` is never used
[INFO] [stdout]    --> src/run/exec.rs:510:4
[INFO] [stdout]     |
[INFO] [stdout] 510 | fn resolve_shared_cache_bin_path(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `collect_shared_cache_bin_candidates` is never used
[INFO] [stdout]    --> src/run/exec.rs:551:4
[INFO] [stdout]     |
[INFO] [stdout] 551 | fn collect_shared_cache_bin_candidates(dir: &Path) -> Result<Vec<PathBuf>, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `refresh_mito_shared_cache` is never used
[INFO] [stdout]    --> src/run/exec.rs:601:4
[INFO] [stdout]     |
[INFO] [stdout] 601 | fn refresh_mito_shared_cache(step: &ToolStep, out_root: &Path) -> Result<(), String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `resolve_shared_cache_bin_path` is never used
[INFO] [stdout]    --> src/run/exec.rs:510:4
[INFO] [stdout]     |
[INFO] [stdout] 510 | fn resolve_shared_cache_bin_path(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `collect_shared_cache_bin_candidates` is never used
[INFO] [stdout]    --> src/run/exec.rs:551:4
[INFO] [stdout]     |
[INFO] [stdout] 551 | fn collect_shared_cache_bin_candidates(dir: &Path) -> Result<Vec<PathBuf>, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `refresh_mito_shared_cache` is never used
[INFO] [stdout]    --> src/run/exec.rs:601:4
[INFO] [stdout]     |
[INFO] [stdout] 601 | fn refresh_mito_shared_cache(step: &ToolStep, out_root: &Path) -> Result<(), String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 57.09s
[INFO] running `Command { std: "docker" "inspect" "5544e0435a179020d80abc12b465b817e00a46556b00654af7c68c0a9a21ab02", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5544e0435a179020d80abc12b465b817e00a46556b00654af7c68c0a9a21ab02", kill_on_drop: false }`
[INFO] [stdout] 5544e0435a179020d80abc12b465b817e00a46556b00654af7c68c0a9a21ab02
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+f9988fefd3add01f414f52b414308e7872622fee" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 8ceb0d9e7aa5da3a0867a04e2e827f112b872aa71dff076697f726b358638b6e
[INFO] running `Command { std: "docker" "start" "-a" "8ceb0d9e7aa5da3a0867a04e2e827f112b872aa71dff076697f726b358638b6e", kill_on_drop: false }`
[INFO] [stderr] warning: function `resolve_shared_cache_bin_path` is never used
[INFO] [stderr]    --> src/run/exec.rs:510:4
[INFO] [stderr]     |
[INFO] [stderr] 510 | fn resolve_shared_cache_bin_path(
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `collect_shared_cache_bin_candidates` is never used
[INFO] [stderr]    --> src/run/exec.rs:551:4
[INFO] [stderr]     |
[INFO] [stderr] 551 | fn collect_shared_cache_bin_candidates(dir: &Path) -> Result<Vec<PathBuf>, String> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `refresh_mito_shared_cache` is never used
[INFO] [stderr]    --> src/run/exec.rs:601:4
[INFO] [stderr]     |
[INFO] [stderr] 601 | fn refresh_mito_shared_cache(step: &ToolStep, out_root: &Path) -> Result<(), String> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `kira-organelle` (lib) generated 3 warnings
[INFO] [stderr] warning: `kira-organelle` (lib test) generated 3 warnings (3 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.28s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/kira_organelle-850452437626b714)
[INFO] [stdout] 
[INFO] [stdout] running 35 tests
[INFO] [stdout] test registry::metrics::tests::canonical_order_and_count_are_stable ... ok
[INFO] [stdout] test report::fii::binning::tests::clamp01_bounds_values ... ok
[INFO] [stdout] test fii::tests::parse_weights ... ok
[INFO] [stdout] test integration_export::tests::manifest_tsv_order_is_applied ... ok
[INFO] [stdout] test fii::tests::regime_boundaries ... ok
[INFO] [stdout] test fii::tests::reject_bad_weight_sum ... ok
[INFO] [stdout] test report::fii::binning::tests::histogram_counts_are_stable ... ok
[INFO] [stdout] test report::fii::binning::tests::heatmap_indices_are_stable ... ok
[INFO] [stdout] test report::fii::cocs::tests::deterministic ... ok
[INFO] [stdout] test report::fii::cocs::tests::missing_organelle_values_are_robust ... ok
[INFO] [stdout] test report::fii::cocs::tests::coupled_vs_uncoupled ... ok
[INFO] [stdout] test report::fii::cai::tests::deterministic_across_runs ... ok
[INFO] [stdout] test report::fii::dci::tests::deterministic ... ok
[INFO] [stdout] test integration_export::tests::order_falls_back_to_input_for_missing_manifest_entries ... ok
[INFO] [stdout] test report::fii::cai::tests::sensitive_to_small_hard_tail ... ok
[INFO] [stdout] test report::fii::cocs::tests::monotonic_higher_than_noisy ... ok
[INFO] [stdout] test report::fii::dci::tests::mixed_partial_is_mid ... ok
[INFO] [stdout] test report::fii::cai::tests::stable_under_count_scaling ... ok
[INFO] [stdout] test report::fii::ili::tests::ili_picks_known_leading_organelle ... ok
[INFO] [stdout] test report::fii::ili::tests::ili_skips_missing_components_and_still_computes ... ok
[INFO] [stdout] test report::fii::ili::tests::ili_tie_and_low_signal_resolve_to_unresolved ... ok
[INFO] [stdout] test report::fii::ili::tests::ili_transition_deterministic ... ok
[INFO] [stdout] test report::fii::pri::tests::weight_normalization_and_ordering_deterministic ... ok
[INFO] [stdout] test report::fii::pri::tests::synthetic_component_combinations ... ok
[INFO] [stdout] test run::exec::tests::build_tool_args_non_riboqc_keeps_step_out ... ok
[INFO] [stdout] test run::tests::report_dir_name_from_input_dataset ... ok
[INFO] [stdout] test systems::cross_sample::tests::basin_overlap_is_one_if_both_empty ... ok
[INFO] [stdout] test run::exec::tests::build_tool_args_riboqc_keeps_step_out ... ok
[INFO] [stdout] test report::fii::dci::tests::fully_concordant_is_high ... ok
[INFO] [stdout] test systems::cross_sample::tests::js_zero_for_identical_distribution ... ok
[INFO] [stdout] test report::fii::cai::tests::synthetic_distributions_show_expected_ordering ... ok
[INFO] [stdout] test report::fii::dci::tests::fully_conflicting_is_low ... ok
[INFO] [stdout] test registry::metrics::tests::alias_lookup_is_supported ... ok
[INFO] [stdout] test run::exec::tests::build_tool_args_riboqc_keeps_root_out_when_already_root ... ok
[INFO] [stdout] test report::fii::dci::tests::missing_is_robust ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 35 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/kira_organelle-95667ac8a517e559)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/snapshot_minimal.rs (/opt/rustwide/target/debug/deps/snapshot_minimal-697ac9a07fbf117d)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test snapshot_minimal_is_byte_identical ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/src_inline_run_exec.rs (/opt/rustwide/target/debug/deps/src_inline_run_exec-7351640ac13e6c0a)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test resolve_barcodes_accepts_prefixed_names ... ok
[INFO] [stdout] test resolve_barcodes_falls_back_to_raw_counts_gz_header ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/src_inline_run_experiments.rs (/opt/rustwide/target/debug/deps/src_inline_run_experiments-3c5e78ff4659fce5)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test discover_multi_raw_counts ... ok
[INFO] [stdout] test fall_back_to_single_directory_mode ... ok
[INFO] [stdout] test discover_multi_tenx_prefixed_dot ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/src_inline_stress_localization.rs (/opt/rustwide/target/debug/deps/src_inline_stress_localization-0b82ff8a56d7ccfc)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test synthetic_coupled_has_low_sli ... ok
[INFO] [stdout] test zero_variance_rhos_are_zero ... ok
[INFO] [stderr]      Running tests/stage0.rs (/opt/rustwide/target/debug/deps/stage0-33507169a147ae2c)
[INFO] [stdout] test synthetic_decoupled_has_high_sli ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test discover_tools_partial ... ok
[INFO] [stdout] test parse_pipeline_step_optional ... ok
[INFO] [stdout] test state_json_deterministic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage1.rs (/opt/rustwide/target/debug/deps/stage1-370b18c0a7b20321)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test extract_axes_partial_quantiles ... ok
[INFO] [stdout] test missing_distributions_warns ... ok
[INFO] [stdout] test organelle_order_deterministic ... ok
[INFO] [stdout] test state_json_schema_v1_deterministic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage10_state_dynamics.rs (/opt/rustwide/target/debug/deps/stage10_state_dynamics-7cc3aabbe9f914b9)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test dynamics_manifest_validation_failures ... ok
[INFO] [stdout] test dynamics_missing_data_propagation ... ok
[INFO] [stdout] test dynamics_two_vs_three_samples_behavior ... ok
[INFO] [stdout] test dynamics_deterministic_for_fixed_fixtures ... ok
[INFO] [stdout] test backward_compatibility_without_dynamics_is_unchanged ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage11_report_phase.rs (/opt/rustwide/target/debug/deps/stage11_report_phase-edd0e9bfc3097916)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test phase_manifest_validation_errors ... ok
[INFO] [stdout] test phase_binning_contains_all_three_projections ... ok
[INFO] [stdout] test phase_flags_trigger_all_types ... ok
[INFO] [stdout] test phase_backward_compat_when_not_invoked ... ok
[INFO] [stdout] test phase_deterministic_outputs ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage12_decision.rs (/opt/rustwide/target/debug/deps/stage12_decision-749ea73add0025c9)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test decision_tier_assignment_correctness ... ok
[INFO] [stdout] test decision_missing_input_degradation ... ok
[INFO] [stdout] test decision_priority_pre_resistant_over_transition ... ok
[INFO] [stdout] test decision_confidence_deterministic ... ok
[INFO] [stdout] test decision_threshold_override_behavior ... ok
[INFO] [stdout] test backward_compat_without_decision_invoked ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage13_decision_timeline.rs (/opt/rustwide/target/debug/deps/stage13_decision_timeline-0b8fa59bc132e92b)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test known_sequence_metrics ... ok
[INFO] [stdout] test confidence_weighted_stability_is_correct ... ok
[INFO] [stdout] test timeline_report_deterministic ... ok
[INFO] [stdout] test edge_cases_single_and_two_samples ... ok
[INFO] [stdout] test backward_compatibility_not_invoked ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage14_commitment_asymmetry.rs (/opt/rustwide/target/debug/deps/stage14_commitment_asymmetry-f2c993434f515ef3)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test stable_under_cell_count_scaling ... ok
[INFO] [stdout] test sensitive_to_small_hard_tail ... ok
[INFO] [stdout] test backward_compatibility_not_invoked ... ok
[INFO] [stdout] test deterministic_across_runs ... ok
[INFO] [stdout] test synthetic_distributions_uniform_skewed_bimodal ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage15_plasticity_reserve.rs (/opt/rustwide/target/debug/deps/stage15_plasticity_reserve-264d169fa1f29f82)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test synthetic_component_combinations ... ok
[INFO] [stdout] test stable_under_sample_reordering_with_manifest ... ok
[INFO] [stdout] test missing_component_degradation_behavior ... ok
[INFO] [stdout] test deterministic_across_runs ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage16_cross_organelle_coupling.rs (/opt/rustwide/target/debug/deps/stage16_cross_organelle_coupling-c405cf9f104d3c1b)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test missing_organelle_is_robust ... ok
[INFO] [stdout] test uncoupled_vs_coupled_transitions ... ok
[INFO] [stdout] test monotonic_more_coupled_than_noisy ... ok
[INFO] [stdout] test deterministic_across_runs ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage17_decision_concordance.rs (/opt/rustwide/target/debug/deps/stage17_decision_concordance-c7866a1ca614fdff)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test fully_concordant_sample ... ok
[INFO] [stdout] test mixed_partial_agreement ... ok
[INFO] [stdout] test missing_organelle_robustness ... ok
[INFO] [stdout] test fully_conflicting_sample ... ok
[INFO] [stderr]      Running tests/stage18_integration_export.rs (/opt/rustwide/target/debug/deps/stage18_integration_export-07d1f987be0fe143)
[INFO] [stdout] test deterministic_across_runs ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test aggregate_writes_integration_artifacts ... ok
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage2.rs (/opt/rustwide/target/debug/deps/stage2-fd65795a292580fc)
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test axis_sorting_deterministic ... ok
[INFO] [stdout] test cells_json_deterministic ... ok
[INFO] [stdout] test cell_key_detection ... ok
[INFO] [stdout] test join_partial_cells ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage3.rs (/opt/rustwide/target/debug/deps/stage3-6df3223693aa4a7b)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test axis_delta_correctness ... ok
[INFO] [stdout] test regime_union_delta ... ok
[INFO] [stdout] test cell_delta_common_only ... ok
[INFO] [stdout] test comparison_deterministic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage4.rs (/opt/rustwide/target/debug/deps/stage4-d4448893183b9296)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test full_pipeline_layout_fail_fast_on_invalid_bundle ... ok
[INFO] [stdout] test partial_pipeline_layout_still_fail_fast_when_contract_invalid ... ok
[INFO] [stdout] test html_single_input_deterministic ... ok
[INFO] [stdout] test html_contains_expected_sections ... ok
[INFO] [stdout] test html_comparison_deterministic ... ok
[INFO] [stdout] test llm_report_deterministic_and_contains_tools ... ok
[INFO] [stdout] test llm_report_suppressed_when_confidence_low ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage5.rs (/opt/rustwide/target/debug/deps/stage5-d0b5c815c5e2f4e8)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test binary_step_passes_cache_to_nuclearqc ... ok
[INFO] [stdout] test binary_fallback_mock ... ok
[INFO] [stdout] test default_cache_path_is_input_root ... ok
[INFO] [stdout] test run_layout_created ... ok
[INFO] [stdout] test dry_run_plan_deterministic ... ok
[INFO] [stdout] test binary_step_passes_assets_to_mitoqc ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage6.rs (/opt/rustwide/target/debug/deps/stage6-5993036c70db48cf)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test error_kind_mapping ... ok
[INFO] [stdout] test outputs_unchanged_after_optimization ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage7.rs (/opt/rustwide/target/debug/deps/stage7-108286e15bd50929)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test comparison_mode_signal_trigger ... ok
[INFO] [stdout] test single_mode_interpretation_deterministic ... ok
[INFO] [stdout] test confidence_computation_stable ... ok
[INFO] [stdout] test no_duplicate_signals ... ok
[INFO] [stderr]      Running tests/stage8_fii.rs (/opt/rustwide/target/debug/deps/stage8_fii-4015710826ae6d06)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.15s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test fii_regime_boundaries ... ok
[INFO] [stdout] test fii_disabled_keeps_legacy_artifacts ... ok
[INFO] [stdout] test fii_low_confidence_when_inputs_missing ... ok
[INFO] [stdout] test fii_weight_variation_changes_score ... ok
[INFO] [stdout] test fii_deterministic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/stage9_report_fii.rs (/opt/rustwide/target/debug/deps/stage9_report_fii-598928ea4248efed)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test report_fii_missing_file_has_stable_error_code ... ok
[INFO] [stdout] test report_fii_manifest_ordering_is_respected ... ok
[INFO] [stdout] test report_fii_golden_sections_present ... ok
[INFO] [stdout] test report_fii_deterministic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.32s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests kira_organelle
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "8ceb0d9e7aa5da3a0867a04e2e827f112b872aa71dff076697f726b358638b6e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8ceb0d9e7aa5da3a0867a04e2e827f112b872aa71dff076697f726b358638b6e", kill_on_drop: false }`
[INFO] [stdout] 8ceb0d9e7aa5da3a0867a04e2e827f112b872aa71dff076697f726b358638b6e
