[INFO] fetching crate bam2ab1 0.5.3... [INFO] checking bam2ab1-0.5.3 against master#c756124775121dea0e640652c5ee3c89e3dd0eb4 for pr-154971 [INFO] extracting crate bam2ab1 0.5.3 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate bam2ab1 0.5.3 [INFO] finished tweaking crates.io crate bam2ab1 0.5.3 [INFO] tweaked toml for crates.io crate bam2ab1 0.5.3 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate bam2ab1 0.5.3 on toolchain c756124775121dea0e640652c5ee3c89e3dd0eb4 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c756124775121dea0e640652c5ee3c89e3dd0eb4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate bam2ab1 0.5.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c756124775121dea0e640652c5ee3c89e3dd0eb4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded gskits v0.15.15 [INFO] [stderr] Downloaded toml_datetime v0.7.1 [INFO] [stderr] Downloaded toml_edit v0.23.5 [INFO] [stderr] Downloaded indexmap v2.11.3 [INFO] [stderr] Downloaded na_seq v0.3.6 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded sysinfo v0.34.2 [INFO] [stderr] Downloaded bio v2.3.0 [INFO] [stderr] Downloaded petgraph v0.8.2 [INFO] [stderr] Downloaded curl-sys v0.4.83+curl-8.15.0 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded openssl-src v300.5.2+3.5.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+c756124775121dea0e640652c5ee3c89e3dd0eb4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] cc11f3ed49a0ded573f632d58013c2f08e3f2c4f2d8881bc67abdb4f8d82ea3f [INFO] running `Command { std: "docker" "start" "-a" "cc11f3ed49a0ded573f632d58013c2f08e3f2c4f2d8881bc67abdb4f8d82ea3f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cc11f3ed49a0ded573f632d58013c2f08e3f2c4f2d8881bc67abdb4f8d82ea3f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc11f3ed49a0ded573f632d58013c2f08e3f2c4f2d8881bc67abdb4f8d82ea3f", kill_on_drop: false }` [INFO] [stdout] cc11f3ed49a0ded573f632d58013c2f08e3f2c4f2d8881bc67abdb4f8d82ea3f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+c756124775121dea0e640652c5ee3c89e3dd0eb4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d94201c1233983b5155fe7c519e4cf44633760643bfd8a94575ec4304f027167 [INFO] running `Command { std: "docker" "start" "-a" "d94201c1233983b5155fe7c519e4cf44633760643bfd8a94575ec4304f027167", kill_on_drop: false }` [INFO] [stderr] Compiling find-msvc-tools v0.1.1 [INFO] [stderr] Compiling serde_core v1.0.225 [INFO] [stderr] Compiling serde v1.0.225 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking num-traits v0.2.19 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling libloading v0.8.8 [INFO] [stderr] Compiling serde_derive v1.0.225 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Checking bytemuck v1.23.2 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling winnow v0.7.13 [INFO] [stderr] Compiling bitflags v2.9.4 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling indexmap v2.11.3 [INFO] [stderr] Compiling cc v1.2.37 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking icu_normalizer v2.0.0 [INFO] [stderr] Compiling toml_datetime v0.7.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Compiling tracing-attributes v0.1.31 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling virtue v0.0.18 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Checking petgraph v0.8.2 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.2+3.5.2 [INFO] [stderr] Compiling toml_parser v1.0.2 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling bincode_derive v2.0.1 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v5.0.0 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling toml_edit v0.23.5 [INFO] [stderr] Checking num-conv v0.2.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Compiling openssl-sys v0.9.109 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling curl-sys v0.4.83+curl-8.15.0 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Compiling proc-macro-crate v3.4.0 [INFO] [stderr] Checking unty v0.0.4 [INFO] [stderr] Checking time v0.3.47 [INFO] [stderr] Checking bincode v2.0.1 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking tracing-log v0.2.0 [INFO] [stderr] Checking uuid v1.18.1 [INFO] [stderr] Compiling num_enum_derive v0.7.4 [INFO] [stderr] Checking matchers v0.2.0 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking serde_json v1.0.149 [INFO] [stderr] Checking sysinfo v0.34.2 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking num_enum v0.7.4 [INFO] [stderr] Checking na_seq v0.3.6 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking url v2.5.7 [INFO] [stderr] Checking tracing-serde v0.2.0 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking tracing-subscriber v0.3.23 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v2.3.0 [INFO] [stderr] Checking rust-htslib v0.49.0 [INFO] [stderr] Checking gskits v0.15.15 [INFO] [stderr] Checking bam2ab1 v0.5.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition value: `encode` [INFO] [stdout] --> src/ab1_bak.rs:26:12 [INFO] [stdout] | [INFO] [stdout] 26 | #[cfg_attr(feature = "encode", derive(Encode, Decode))] [INFO] [stdout] | ^^^^^^^^^^-------- [INFO] [stdout] | | [INFO] [stdout] | help: there is a expected value with a similar name: `"bincode"` [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `bincode` [INFO] [stdout] = help: consider adding `encode` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `encode` [INFO] [stdout] --> src/ab1_bak.rs:17:7 [INFO] [stdout] | [INFO] [stdout] 17 | #[cfg(feature = "encode")] [INFO] [stdout] | ^^^^^^^^^^-------- [INFO] [stdout] | | [INFO] [stdout] | help: there is a expected value with a similar name: `"bincode"` [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `bincode` [INFO] [stdout] = help: consider adding `encode` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::pileup_counter::PlpInfo` [INFO] [stdout] --> src/pileup_counter/mod.rs:288:9 [INFO] [stdout] | [INFO] [stdout] 288 | use crate::pileup_counter::PlpInfo; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `encode` [INFO] [stdout] --> src/ab1_bak.rs:26:12 [INFO] [stdout] | [INFO] [stdout] 26 | #[cfg_attr(feature = "encode", derive(Encode, Decode))] [INFO] [stdout] | ^^^^^^^^^^-------- [INFO] [stdout] | | [INFO] [stdout] | help: there is a expected value with a similar name: `"bincode"` [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `bincode` [INFO] [stdout] = help: consider adding `encode` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `encode` [INFO] [stdout] --> src/ab1_bak.rs:17:7 [INFO] [stdout] | [INFO] [stdout] 17 | #[cfg(feature = "encode")] [INFO] [stdout] | ^^^^^^^^^^-------- [INFO] [stdout] | | [INFO] [stdout] | help: there is a expected value with a similar name: `"bincode"` [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `bincode` [INFO] [stdout] = help: consider adding `encode` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 36s [INFO] running `Command { std: "docker" "inspect" "d94201c1233983b5155fe7c519e4cf44633760643bfd8a94575ec4304f027167", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d94201c1233983b5155fe7c519e4cf44633760643bfd8a94575ec4304f027167", kill_on_drop: false }` [INFO] [stdout] d94201c1233983b5155fe7c519e4cf44633760643bfd8a94575ec4304f027167