[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9cb4d8c1296395af550005a385efd7d521aa15f3
[INFO] checking informationsea/sequencetoolkit against master#49b6ac01d6f4c3da812039ae846407a20961aa4c for pr-154887
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 49b6ac01d6f4c3da812039ae846407a20961aa4c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+49b6ac01d6f4c3da812039ae846407a20961aa4c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+49b6ac01d6f4c3da812039ae846407a20961aa4c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded temp-file v0.1.9
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded zmij v1.0.17
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded xz2 v0.1.7
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded autocompress v0.6.0
[INFO] [stderr]   Downloaded clap v4.5.55
[INFO] [stderr]   Downloaded xlsxwriter v0.6.1
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded nom v5.1.3
[INFO] [stderr]   Downloaded zerocopy v0.8.35
[INFO] [stderr]   Downloaded clap_builder v4.5.55
[INFO] [stderr]   Downloaded zerocopy-derive v0.8.35
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded vcf v0.6.1
[INFO] [stderr]   Downloaded lexical-core v0.7.6
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]   Downloaded libxlsxwriter-sys v1.1.7
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.5+3.5.5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+49b6ac01d6f4c3da812039ae846407a20961aa4c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ed26f734b8de21917c2dbcb7366e2cb63a5e6df28299a7010b1381dffe0ae689
[INFO] running `Command { std: "docker" "start" "-a" "ed26f734b8de21917c2dbcb7366e2cb63a5e6df28299a7010b1381dffe0ae689", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ed26f734b8de21917c2dbcb7366e2cb63a5e6df28299a7010b1381dffe0ae689", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ed26f734b8de21917c2dbcb7366e2cb63a5e6df28299a7010b1381dffe0ae689", kill_on_drop: false }`
[INFO] [stdout] ed26f734b8de21917c2dbcb7366e2cb63a5e6df28299a7010b1381dffe0ae689
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+49b6ac01d6f4c3da812039ae846407a20961aa4c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 42a042519acfdbfc9fce4941f70e8db618de6aace4effd242d66d26eff6f0a85
[INFO] running `Command { std: "docker" "start" "-a" "42a042519acfdbfc9fce4941f70e8db618de6aace4effd242d66d26eff6f0a85", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling find-msvc-tools v0.1.8
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling zerocopy v0.8.35
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking simd-adler32 v0.3.8
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking anstyle-query v1.1.5
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking bytes v1.11.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking clap_lex v0.7.7
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking ryu v1.0.22
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking clap_builder v4.5.55
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking tokio v1.49.0
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking getrandom v0.2.17
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]     Checking flate2 v1.1.8
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling cc v1.2.54
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]    Compiling linux-raw-sys v0.4.15
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]    Compiling home v0.5.12
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]    Compiling openssl-src v300.5.5+3.5.5
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]    Compiling nom v5.1.3
[INFO] [stderr]     Checking arrayvec v0.5.2
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling zmij v1.0.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr] error: could not compile `simba` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/49b6ac01d6f4c3da812039ae846407a20961aa4c/bin/rustc --crate-name simba --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/simba-0.6.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="std"' --cfg 'feature="wide"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("cordic", "decimal", "default", "fixed", "libm", "libm_force", "packed_simd", "partial_fixed_point_support", "rand", "serde", "serde_serialize", "std", "wide"))' -C metadata=d338cf793689ea4f -C extra-filename=-218429dbf0fac2e0 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-a45fabaa4284413c.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-d229972552afeea8.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-b0ab957f0a86187b.rmeta --extern paste=/opt/rustwide/target/debug/deps/libpaste-c5e5e8a2bd161c29.so --extern wide=/opt/rustwide/target/debug/deps/libwide-4e00eb95c519d01f.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/49b6ac01d6f4c3da812039ae846407a20961aa4c/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.114/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=97d7726f98351cb7 -C extra-filename=-c9b48d6183064ef7 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-fec5599a7f184630.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-de2c59b803aecfd0.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-9533002ac35f5809.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "42a042519acfdbfc9fce4941f70e8db618de6aace4effd242d66d26eff6f0a85", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "42a042519acfdbfc9fce4941f70e8db618de6aace4effd242d66d26eff6f0a85", kill_on_drop: false }`
[INFO] [stdout] 42a042519acfdbfc9fce4941f70e8db618de6aace4effd242d66d26eff6f0a85