[INFO] cloning repository https://github.com/olawa/rs-qc
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/olawa/rs-qc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Folawa%2Frs-qc", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] faa924ef9037fea77f99b88415bded6a1c51469f
[INFO] checking olawa/rs-qc against 0b63defc8fd68957c635fe61f097b84df8fd9611 for pr-154715
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Folawa%2Frs-qc" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
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[INFO] validating manifest of git repo https://github.com/olawa/rs-qc on toolchain 0b63defc8fd68957c635fe61f097b84df8fd9611
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
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[INFO] [stderr]     Checking region_plot v0.1.0 (/opt/rustwide/workdir/crates/region_plot)
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stdout] warning: variant `Pileup` is never constructed
[INFO] [stdout]    --> crates/region_plot/src/scene.rs:451:5
[INFO] [stdout]     |
[INFO] [stdout] 449 | enum BaseSource<'a> {
[INFO] [stdout]     |      ---------- variant in this enum
[INFO] [stdout] 450 |     Ref(&'a [u8]),
[INFO] [stdout] 451 |     Pileup(&'a [BasePileup]),
[INFO] [stdout]     |     ^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking rs-qc v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/analysis/index.rs:256:13
[INFO] [stdout]     |
[INFO] [stdout] 256 |         let mut gene1 = Gene {
[INFO] [stdout]     |             ----^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/analysis/index.rs:275:13
[INFO] [stdout]     |
[INFO] [stdout] 275 |         let mut gene2 = Gene {
[INFO] [stdout]     |             ----^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `merge` is never used
[INFO] [stdout]    --> src/analysis/alignment_qc.rs:936:12
[INFO] [stdout]     |
[INFO] [stdout] 935 | impl ReadQcMetrics {
[INFO] [stdout]     | ------------------ method in this implementation
[INFO] [stdout] 936 |     pub fn merge(&mut self, other: ReadQcMetrics) {
[INFO] [stdout]     |            ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `FeatureCursor` is never constructed
[INFO] [stdout]   --> src/analysis/feature_index.rs:43:12
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub struct FeatureCursor {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `cursor_at` and `classify` are never used
[INFO] [stdout]    --> src/analysis/feature_index.rs:140:12
[INFO] [stdout]     |
[INFO] [stdout] 139 | impl ChromFeatureIndex {
[INFO] [stdout]     | ---------------------- methods in this implementation
[INFO] [stdout] 140 |     pub fn cursor_at(&self, pos: u64) -> FeatureCursor {
[INFO] [stdout]     |            ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 146 |     pub fn classify(&self, pos: u64, cursor: &mut FeatureCursor) -> RegionType {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `overview_module_counts` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1265:4
[INFO] [stdout]      |
[INFO] [stdout] 1265 | fn overview_module_counts(document: &ReportDocument) -> Vec<(String, usize)> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `artifact_links` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1273:4
[INFO] [stdout]      |
[INFO] [stdout] 1273 | fn artifact_links(section: &ReportSection) -> Vec<(String, String)> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `rna_summary_figure_link` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1333:4
[INFO] [stdout]      |
[INFO] [stdout] 1333 | fn rna_summary_figure_link(section: &ReportSection) -> Option<(String, String)> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `rna_snapshot_items` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1346:4
[INFO] [stdout]      |
[INFO] [stdout] 1346 | fn rna_snapshot_items(section: &ReportSection) -> Option<Vec<(String, String, String)>> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `summary_prefix_from_path` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1369:4
[INFO] [stdout]      |
[INFO] [stdout] 1369 | fn summary_prefix_from_path(path: &Path) -> Option<String> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `flatten_summary` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1385:4
[INFO] [stdout]      |
[INFO] [stdout] 1385 | fn flatten_summary(value: &Value, prefix: &str) -> Vec<(String, String)> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `is_scalar` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1415:4
[INFO] [stdout]      |
[INFO] [stdout] 1415 | fn is_scalar(value: &Value) -> bool {
[INFO] [stdout]      |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `render_scalar` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1422:4
[INFO] [stdout]      |
[INFO] [stdout] 1422 | fn render_scalar(value: &Value) -> String {
[INFO] [stdout]      |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `new`, `records_processed`, `header`, `orphans_count`, and `discordant_count` are never used
[INFO] [stdout]   --> src/io/bam.rs:38:12
[INFO] [stdout]    |
[INFO] [stdout] 37 | impl BamFragmentIterator {
[INFO] [stdout]    | ------------------------ associated items in this implementation
[INFO] [stdout] 38 |     pub fn new(path: &str, mapq_threshold: u8, worker_count: usize) -> Result<Self> {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 56 |     pub fn records_processed(&self) -> u64 {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 60 |     pub fn header(&self) -> &sam::Header {
[INFO] [stdout]    |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 64 |     pub fn orphans_count(&self) -> u64 {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 68 |     pub fn discordant_count(&self) -> u64 {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> src/models/fragment.rs:12:12
[INFO] [stdout]    |
[INFO] [stdout]  9 | impl Fragment {
[INFO] [stdout]    | ------------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 12 |     pub fn new(chrom: String, mut blocks: Vec<Exon>) -> Self {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `with_num_isoforms` is never used
[INFO] [stdout]    --> src/models/gene.rs:118:12
[INFO] [stdout]     |
[INFO] [stdout]  90 | impl Gene {
[INFO] [stdout]     | --------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 118 |     pub fn with_num_isoforms(mut self, num_isoforms: usize) -> Self {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `overview_module_counts` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1265:4
[INFO] [stdout]      |
[INFO] [stdout] 1265 | fn overview_module_counts(document: &ReportDocument) -> Vec<(String, usize)> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `artifact_links` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1273:4
[INFO] [stdout]      |
[INFO] [stdout] 1273 | fn artifact_links(section: &ReportSection) -> Vec<(String, String)> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `rna_summary_figure_link` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1333:4
[INFO] [stdout]      |
[INFO] [stdout] 1333 | fn rna_summary_figure_link(section: &ReportSection) -> Option<(String, String)> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `rna_snapshot_items` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1346:4
[INFO] [stdout]      |
[INFO] [stdout] 1346 | fn rna_snapshot_items(section: &ReportSection) -> Option<Vec<(String, String, String)>> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `summary_prefix_from_path` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1369:4
[INFO] [stdout]      |
[INFO] [stdout] 1369 | fn summary_prefix_from_path(path: &Path) -> Option<String> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `flatten_summary` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1385:4
[INFO] [stdout]      |
[INFO] [stdout] 1385 | fn flatten_summary(value: &Value, prefix: &str) -> Vec<(String, String)> {
[INFO] [stdout]      |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `is_scalar` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1415:4
[INFO] [stdout]      |
[INFO] [stdout] 1415 | fn is_scalar(value: &Value) -> bool {
[INFO] [stdout]      |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `render_scalar` is never used
[INFO] [stdout]     --> src/analysis/report.rs:1422:4
[INFO] [stdout]      |
[INFO] [stdout] 1422 | fn render_scalar(value: &Value) -> String {
[INFO] [stdout]      |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `new`, `records_processed`, `header`, `orphans_count`, and `discordant_count` are never used
[INFO] [stdout]   --> src/io/bam.rs:38:12
[INFO] [stdout]    |
[INFO] [stdout] 37 | impl BamFragmentIterator {
[INFO] [stdout]    | ------------------------ associated items in this implementation
[INFO] [stdout] 38 |     pub fn new(path: &str, mapq_threshold: u8, worker_count: usize) -> Result<Self> {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 56 |     pub fn records_processed(&self) -> u64 {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 60 |     pub fn header(&self) -> &sam::Header {
[INFO] [stdout]    |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 64 |     pub fn orphans_count(&self) -> u64 {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 68 |     pub fn discordant_count(&self) -> u64 {
[INFO] [stdout]    |            ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]   --> src/models/fragment.rs:12:12
[INFO] [stdout]    |
[INFO] [stdout]  9 | impl Fragment {
[INFO] [stdout]    | ------------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 12 |     pub fn new(chrom: String, mut blocks: Vec<Exon>) -> Self {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `with_num_isoforms` is never used
[INFO] [stdout]    --> src/models/gene.rs:118:12
[INFO] [stdout]     |
[INFO] [stdout]  90 | impl Gene {
[INFO] [stdout]     | --------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 118 |     pub fn with_num_isoforms(mut self, num_isoforms: usize) -> Self {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 52.71s
[INFO] running `Command { std: "docker" "inspect" "1daa025accae80c01882422968cb7672372b3007d288d3711f9ad75bb1500403", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1daa025accae80c01882422968cb7672372b3007d288d3711f9ad75bb1500403", kill_on_drop: false }`
[INFO] [stdout] 1daa025accae80c01882422968cb7672372b3007d288d3711f9ad75bb1500403
