[INFO] cloning repository https://github.com/omics-rust/rsomics-annotation
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/omics-rust/rsomics-annotation" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomics-rust%2Frsomics-annotation", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomics-rust%2Frsomics-annotation'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8e7beed4d51efb78e839cddf24288e04bf93134a
[INFO] checking omics-rust/rsomics-annotation against 65b20a97de33e9e59992793a144aef2950c48c76 for pr-154715
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomics-rust%2Frsomics-annotation" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/omics-rust/rsomics-annotation
[INFO] finished tweaking git repo https://github.com/omics-rust/rsomics-annotation
[INFO] tweaked toml for git repo https://github.com/omics-rust/rsomics-annotation written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/omics-rust/rsomics-annotation on toolchain 65b20a97de33e9e59992793a144aef2950c48c76
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65b20a97de33e9e59992793a144aef2950c48c76" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/omics-rust/rsomics-annotation already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65b20a97de33e9e59992793a144aef2950c48c76" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking omics-rust/rsomics-annotation against 65b20a97de33e9e59992793a144aef2950c48c76 for pr-154715
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomics-rust%2Frsomics-annotation" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/omics-rust/rsomics-annotation
[INFO] finished tweaking git repo https://github.com/omics-rust/rsomics-annotation
[INFO] tweaked toml for git repo https://github.com/omics-rust/rsomics-annotation written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/omics-rust/rsomics-annotation on toolchain 65b20a97de33e9e59992793a144aef2950c48c76
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65b20a97de33e9e59992793a144aef2950c48c76" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/omics-rust/rsomics-annotation already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+65b20a97de33e9e59992793a144aef2950c48c76" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rsomics-intervals v0.3.0
[INFO] [stderr]   Downloaded rsomics-help v0.4.0
[INFO] [stderr]   Downloaded noodles-gff v0.55.0
[INFO] [stderr]   Downloaded noodles-gtf v0.50.0
[INFO] [stderr]   Downloaded rsomics-common v0.11.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.46.0
[INFO] [stderr]   Downloaded noodles-csi v0.54.0
[INFO] [stderr]   Downloaded noodles-fasta v0.59.0
[INFO] [stderr]   Downloaded noodles-core v0.19.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731
[INFO] running `Command { std: "docker" "start" "9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731" "/opt/rustwide/cargo-home/bin/cargo" "+65b20a97de33e9e59992793a144aef2950c48c76" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731" "/opt/rustwide/cargo-home/bin/cargo" "+65b20a97de33e9e59992793a144aef2950c48c76" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.22
[INFO] [stderr]     Checking bitflags v2.13.1
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking zlib-rs v0.6.6
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]     Checking bstr v1.13.0
[INFO] [stderr]    Compiling thiserror v2.0.19
[INFO] [stderr]    Compiling serde_json v1.0.151
[INFO] [stderr]    Compiling thiserror-impl v2.0.19
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]     Checking fastrand v2.5.0
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking noodles-core v0.19.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.16
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking rsomics-intervals v0.3.0
[INFO] [stderr]     Checking getrandom v0.4.3
[INFO] [stderr]     Checking flate2 v1.1.9
[INFO] [stderr]     Checking noodles-bgzf v0.46.0
[INFO] [stderr]     Checking terminal_size v0.4.4
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking noodles-csi v0.54.0
[INFO] [stderr]     Checking noodles-fasta v0.59.0
[INFO] [stderr]     Checking clap_builder v4.6.2
[INFO] [stderr]     Checking noodles-gff v0.55.0
[INFO] [stderr]     Checking noodles-gtf v0.50.0
[INFO] [stderr]     Checking clap v4.6.4
[INFO] [stderr]     Checking rsomics-common v0.11.0
[INFO] [stderr]     Checking rsomics-help v0.4.0
[INFO] [stderr]     Checking rsomics-annotation v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 9.68s
[INFO] running `Command { std: "docker" "inspect" "9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731", kill_on_drop: false }`
[INFO] [stdout] 9492f221a8fea5fc77efdcee35c498252bd49ce077b1bafea89d9b09b1a18731
