[INFO] cloning repository https://github.com/sourmash-bio/pyo3_branchwater
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sourmash-bio/pyo3_branchwater" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsourmash-bio%2Fpyo3_branchwater", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsourmash-bio%2Fpyo3_branchwater'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] db3ddb7e840a03b4ef91b1749506d8706f43f89f
[INFO] checking sourmash-bio/pyo3_branchwater/db3ddb7e840a03b4ef91b1749506d8706f43f89f against master#e1613686e0efc80a1a18b1263625450a8de3fb04 for pr-154492
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsourmash-bio%2Fpyo3_branchwater" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-0-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/sourmash-bio/pyo3_branchwater
[INFO] finished tweaking git repo https://github.com/sourmash-bio/pyo3_branchwater
[INFO] tweaked toml for git repo https://github.com/sourmash-bio/pyo3_branchwater written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sourmash-bio/pyo3_branchwater on toolchain e1613686e0efc80a1a18b1263625450a8de3fb04
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sourmash-bio/pyo3_branchwater already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded streaming-stats v0.2.3
[INFO] [stderr]   Downloaded binary-merge v0.1.2
[INFO] [stderr]   Downloaded inplace-vec-builder v0.1.1
[INFO] [stderr]   Downloaded primal-check v0.3.4
[INFO] [stderr]   Downloaded rust_decimal_macros v1.40.0
[INFO] [stderr]   Downloaded sorted-iter v0.1.11
[INFO] [stderr]   Downloaded typed-builder-macro v0.20.1
[INFO] [stderr]   Downloaded typed-builder v0.20.1
[INFO] [stderr]   Downloaded rayon-cond v0.3.0
[INFO] [stderr]   Downloaded murmurhash3 v0.0.5
[INFO] [stderr]   Downloaded simple-error v0.3.2
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded counter v0.6.0
[INFO] [stderr]   Downloaded rkyv_derive v0.7.46
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded simba v0.9.0
[INFO] [stderr]   Downloaded niffler v3.0.0
[INFO] [stderr]   Downloaded wide v0.7.24
[INFO] [stderr]   Downloaded rkyv v0.7.46
[INFO] [stderr]   Downloaded rustworkx-core v0.16.0
[INFO] [stderr]   Downloaded rust_decimal v1.40.0
[INFO] [stderr]   Downloaded vec-collections v0.4.3
[INFO] [stderr]   Downloaded roaring v0.11.0
[INFO] [stderr]   Downloaded sourmash v0.21.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.8
[INFO] [stderr]   Downloaded zip v4.2.0
[INFO] [stderr]   Downloaded piz v0.5.1
[INFO] [stderr]   Downloaded thiserror-impl v2.0.3
[INFO] [stderr]   Downloaded priority-queue v2.1.1
[INFO] [stderr]   Downloaded histogram v0.11.3
[INFO] [stderr]   Downloaded buffer-redux v1.0.1
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded codepage-437 v0.1.0
[INFO] [stderr]   Downloaded thiserror v2.0.3
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6b8cc7255e3fe16a52e4d2c41b22077f843ca44def6c4e5560f66da8dd8b6228
[INFO] running `Command { std: "docker" "start" "-a" "6b8cc7255e3fe16a52e4d2c41b22077f843ca44def6c4e5560f66da8dd8b6228", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6b8cc7255e3fe16a52e4d2c41b22077f843ca44def6c4e5560f66da8dd8b6228", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6b8cc7255e3fe16a52e4d2c41b22077f843ca44def6c4e5560f66da8dd8b6228", kill_on_drop: false }`
[INFO] [stdout] 6b8cc7255e3fe16a52e4d2c41b22077f843ca44def6c4e5560f66da8dd8b6228
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 571828abbfdb960fbf8de515db9b61e4a67e8186d6538eb806d1a6637704e1df
[INFO] running `Command { std: "docker" "start" "-a" "571828abbfdb960fbf8de515db9b61e4a67e8186d6538eb806d1a6637704e1df", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling jobserver v0.1.31
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling regex-syntax v0.8.4
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]    Compiling either v1.12.0
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling cc v1.0.99
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling target-lexicon v0.13.2
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling bindgen v0.71.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]     Checking rayon-core v1.12.1
[INFO] [stderr]    Compiling regex-automata v0.4.7
[INFO] [stderr]    Compiling pyo3-build-config v0.27.2
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking bytemuck v1.22.0
[INFO] [stderr]     Checking zerocopy v0.7.34
[INFO] [stderr]    Compiling regex v1.10.5
[INFO] [stderr]     Checking miniz_oxide v0.7.4
[INFO] [stderr]     Checking ahash v0.8.11
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking flate2 v1.0.30
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]    Compiling proc-macro2-diagnostics v0.10.1
[INFO] [stderr]     Checking indexmap v2.5.0
[INFO] [stderr]     Checking wide v0.7.24
[INFO] [stderr]    Compiling pyo3-ffi v0.27.2
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.2
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.61
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling zmij v1.0.2
[INFO] [stderr]    Compiling thiserror v2.0.3
[INFO] [stderr]    Compiling camino v1.2.2
[INFO] [stderr]     Checking simba v0.9.0
[INFO] [stderr]    Compiling codepage-437 v0.1.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.3
[INFO] [stderr]     Checking thiserror v1.0.61
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling getrandom v0.3.1
[INFO] [stderr]     Checking iana-time-zone v0.1.60
[INFO] [stderr]    Compiling az v1.2.1
[INFO] [stderr]     Checking inplace-vec-builder v0.1.1
[INFO] [stderr]     Checking chrono v0.4.38
[INFO] [stderr]    Compiling ouroboros_macro v0.18.5
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking bgzip v0.3.1
[INFO] [stderr]    Compiling typed-builder-macro v0.20.1
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]    Compiling librocksdb-sys v0.17.1+9.9.3
[INFO] [stderr]     Checking liblzma v0.3.6
[INFO] [stderr]     Checking bzip2 v0.5.2
[INFO] [stderr]    Compiling pyo3 v0.27.2
[INFO] [stderr]     Checking buffer-redux v1.0.1
[INFO] [stderr]     Checking sorted-iter v0.1.11
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]    Compiling rust_decimal v1.40.0
[INFO] [stderr]    Compiling sourmash v0.21.0
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]     Checking anstyle-query v1.1.0
[INFO] [stderr]     Checking binary-merge v0.1.2
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking vec-collections v0.4.3
[INFO] [stderr]     Checking rustix v1.1.4
[INFO] [stderr]     Checking ouroboros v0.18.5
[INFO] [stderr]     Checking petgraph v0.7.1
[INFO] [stderr]    Compiling zstd-sys v2.0.15+zstd.1.5.7
[INFO] [stderr]     Checking roaring v0.11.0
[INFO] [stderr]     Checking typed-builder v0.20.1
[INFO] [stderr]     Checking rayon-cond v0.3.0
[INFO] [stderr]     Checking piz v0.5.1
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]     Checking twox-hash v1.6.3
[INFO] [stderr]     Checking histogram v0.11.3
[INFO] [stderr]     Checking env_filter v1.0.0
[INFO] [stderr]    Compiling enum_dispatch v0.3.13
[INFO] [stderr]     Checking priority-queue v2.1.1
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking primal-check v0.3.4
[INFO] [stderr]    Compiling pyo3-macros v0.27.2
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking rand_pcg v0.3.1
[INFO] [stderr]     Checking counter v0.6.0
[INFO] [stderr]     Checking float-cmp v0.10.0
[INFO] [stderr]     Checking streaming-stats v0.2.3
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking memmap2 v0.9.5
[INFO] [stderr]    Compiling assert_cmd v2.1.2
[INFO] [stderr]     Checking fastrand v2.1.1
[INFO] [stderr]     Checking murmurhash3 v0.0.5
[INFO] [stderr]     Checking roots v0.0.8
[INFO] [stderr]     Checking tempfile v3.26.0
[INFO] [stderr]     Checking predicates v3.1.4
[INFO] [stderr]     Checking env_logger v0.11.9
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]    Compiling rust_decimal_macros v1.40.0
[INFO] [stderr]     Checking zip v4.2.0
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking glob v0.3.3
[INFO] [stderr]     Checking simple-error v0.3.2
[INFO] [stderr]     Checking rustworkx-core v0.16.0
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking needletail v0.6.3
[INFO] [stderr]     Checking niffler v3.0.0
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "571828abbfdb960fbf8de515db9b61e4a67e8186d6538eb806d1a6637704e1df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "571828abbfdb960fbf8de515db9b61e4a67e8186d6538eb806d1a6637704e1df", kill_on_drop: false }`
[INFO] [stdout] 571828abbfdb960fbf8de515db9b61e4a67e8186d6538eb806d1a6637704e1df