[INFO] cloning repository https://github.com/sourmash-bio/pyo3_branchwater [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sourmash-bio/pyo3_branchwater" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsourmash-bio%2Fpyo3_branchwater", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsourmash-bio%2Fpyo3_branchwater'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 4904e99281eb1ec8f4751c63ef3353d3b8dd5312 [INFO] checking sourmash-bio/pyo3_branchwater against master#e1613686e0efc80a1a18b1263625450a8de3fb04 for pr-154492-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsourmash-bio%2Fpyo3_branchwater" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-0-tc1/source/.cargo/config.toml [INFO] started tweaking git repo https://github.com/sourmash-bio/pyo3_branchwater [INFO] finished tweaking git repo https://github.com/sourmash-bio/pyo3_branchwater [INFO] tweaked toml for git repo https://github.com/sourmash-bio/pyo3_branchwater written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/sourmash-bio/pyo3_branchwater on toolchain e1613686e0efc80a1a18b1263625450a8de3fb04 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/sourmash-bio/pyo3_branchwater already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded streaming-stats v0.2.3 [INFO] [stderr] Downloaded binary-merge v0.1.2 [INFO] [stderr] Downloaded inplace-vec-builder v0.1.1 [INFO] [stderr] Downloaded rand_pcg v0.9.0 [INFO] [stderr] Downloaded sorted-iter v0.1.11 [INFO] [stderr] Downloaded typed-builder v0.22.0 [INFO] [stderr] Downloaded getset v0.1.6 [INFO] [stderr] Downloaded md5 v0.8.0 [INFO] [stderr] Downloaded simple-error v0.3.2 [INFO] [stderr] Downloaded rayon-cond v0.4.0 [INFO] [stderr] Downloaded pyo3-macros v0.28.3 [INFO] [stderr] Downloaded murmurhash3 v0.0.5 [INFO] [stderr] Downloaded counter v0.6.0 [INFO] [stderr] Downloaded replace_with v0.1.8 [INFO] [stderr] Downloaded target-lexicon v0.13.5 [INFO] [stderr] Downloaded assert_cmd v2.2.1 [INFO] [stderr] Downloaded piz v0.5.1 [INFO] [stderr] Downloaded buffer-redux v1.1.0 [INFO] [stderr] Downloaded az v1.3.0 [INFO] [stderr] Downloaded typed-builder-macro v0.22.0 [INFO] [stderr] Downloaded pyo3-build-config v0.28.3 [INFO] [stderr] Downloaded libbz2-rs-sys v0.2.3 [INFO] [stderr] Downloaded portable-atomic-util v0.2.7 [INFO] [stderr] Downloaded priority-queue v2.7.0 [INFO] [stderr] Downloaded bzip2 v0.5.2 [INFO] [stderr] Downloaded pyo3-ffi v0.28.3 [INFO] [stderr] Downloaded jiff-static v0.2.24 [INFO] [stderr] Downloaded typed-path v0.12.3 [INFO] [stderr] Downloaded typenum v1.20.0 [INFO] [stderr] Downloaded roaring v0.11.3 [INFO] [stderr] Downloaded rust_decimal v1.41.0 [INFO] [stderr] Downloaded rocksdb v0.24.0 [INFO] [stderr] Downloaded winnow v1.0.2 [INFO] [stderr] Downloaded vec-collections v0.4.3 [INFO] [stderr] Downloaded rustworkx-core v0.17.1 [INFO] [stderr] Downloaded sourmash v0.22.0 [INFO] [stderr] Downloaded zip v7.2.0 [INFO] [stderr] Downloaded pyo3-macros-backend v0.28.3 [INFO] [stderr] Downloaded niffler v3.0.0 [INFO] [stderr] Downloaded roots v0.0.8 [INFO] [stderr] Downloaded bgzip v0.3.1 [INFO] [stderr] Downloaded nalgebra v0.33.3 [INFO] [stderr] Downloaded liblzma v0.3.6 [INFO] [stderr] Downloaded histogram v0.11.5 [INFO] [stderr] Downloaded codepage-437 v0.1.0 [INFO] [stderr] Downloaded needletail v0.7.3 [INFO] [stderr] Downloaded needletail v0.6.3 [INFO] [stderr] Downloaded bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Downloaded jiff v0.2.24 [INFO] [stderr] Downloaded pyo3 v0.28.3 [INFO] [stderr] Downloaded liblzma-sys v0.3.13 [INFO] [stderr] Downloaded librocksdb-sys v0.17.3+10.4.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 18f6366fc2c64f59f4cfe3870ad710317a96241913029831f7c05b59c1b0787a [INFO] running `Command { std: "docker" "start" "-a" "18f6366fc2c64f59f4cfe3870ad710317a96241913029831f7c05b59c1b0787a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "18f6366fc2c64f59f4cfe3870ad710317a96241913029831f7c05b59c1b0787a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "18f6366fc2c64f59f4cfe3870ad710317a96241913029831f7c05b59c1b0787a", kill_on_drop: false }` [INFO] [stdout] 18f6366fc2c64f59f4cfe3870ad710317a96241913029831f7c05b59c1b0787a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cbafea5a6af3d2b281625924bee805d2050ca0bab8f65daa720adc766a4719b5 [INFO] running `Command { std: "docker" "start" "-a" "cbafea5a6af3d2b281625924bee805d2050ca0bab8f65daa720adc766a4719b5", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.186 [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling quote v1.0.45 [INFO] [stderr] Compiling unicode-ident v1.0.24 [INFO] [stderr] Compiling libm v0.2.16 [INFO] [stderr] Compiling find-msvc-tools v0.1.9 [INFO] [stderr] Compiling pkg-config v0.3.33 [INFO] [stderr] Checking memchr v2.8.0 [INFO] [stderr] Compiling target-lexicon v0.13.5 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling zerocopy v0.8.48 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking simd-adler32 v0.3.9 [INFO] [stderr] Compiling bindgen v0.72.1 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking rayon v1.12.0 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling bitflags v2.11.1 [INFO] [stderr] Compiling pyo3-build-config v0.28.3 [INFO] [stderr] Compiling ryu v1.0.23 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling rustc-hash v2.1.2 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling itoa v1.0.18 [INFO] [stderr] Checking flate2 v1.1.9 [INFO] [stderr] Compiling proc-macro2-diagnostics v0.10.1 [INFO] [stderr] Checking num-traits v0.2.19 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking hashbrown v0.17.0 [INFO] [stderr] Compiling cc v1.2.61 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking getrandom v0.3.4 [INFO] [stderr] Checking rand_core v0.9.5 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling yansi v1.0.1 [INFO] [stderr] Checking anstyle v1.0.14 [INFO] [stderr] Compiling zmij v1.0.21 [INFO] [stderr] Compiling camino v1.2.2 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling pyo3-macros-backend v0.28.3 [INFO] [stderr] Compiling pyo3-ffi v0.28.3 [INFO] [stderr] Checking buffer-redux v1.1.0 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Compiling getrandom v0.4.2 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Compiling anyhow v1.0.102 [INFO] [stderr] Checking once_cell v1.21.4 [INFO] [stderr] Checking iana-time-zone v0.1.65 [INFO] [stderr] Checking indexmap v2.14.0 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Checking allocator-api2 v0.2.21 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Checking typenum v1.20.0 [INFO] [stderr] Checking inplace-vec-builder v0.1.1 [INFO] [stderr] Checking chrono v0.4.44 [INFO] [stderr] Checking anstyle-parse v1.0.0 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling liblzma-sys v0.3.13 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Compiling pyo3 v0.28.3 [INFO] [stderr] Compiling csv v1.4.0 [INFO] [stderr] Checking libbz2-rs-sys v0.2.3 [INFO] [stderr] Checking linux-raw-sys v0.12.1 [INFO] [stderr] Checking aliasable v0.1.3 [INFO] [stderr] Compiling sourmash v0.22.0 [INFO] [stderr] Checking colorchoice v1.0.5 [INFO] [stderr] Checking predicates-core v1.0.10 [INFO] [stderr] Checking binary-merge v0.1.2 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking sorted-iter v0.1.11 [INFO] [stderr] Compiling rust_decimal v1.41.0 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Checking anstream v1.0.0 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Checking bzip2 v0.6.1 [INFO] [stderr] Checking env_filter v1.0.1 [INFO] [stderr] Checking rayon-cond v0.4.0 [INFO] [stderr] Checking bzip2 v0.5.2 [INFO] [stderr] Checking roaring v0.11.3 [INFO] [stderr] Compiling codepage-437 v0.1.0 [INFO] [stderr] Checking priority-queue v2.7.0 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking needletail v0.6.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking rand v0.9.4 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking rand v0.8.6 [INFO] [stderr] Checking primal-check v0.3.4 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking rand_pcg v0.9.0 [INFO] [stderr] Checking counter v0.6.0 [INFO] [stderr] Checking streaming-stats v0.2.3 [INFO] [stderr] Checking float-cmp v0.10.0 [INFO] [stderr] Checking memmap2 v0.9.10 [INFO] [stderr] Checking jiff v0.2.24 [INFO] [stderr] Checking roots v0.0.8 [INFO] [stderr] Checking az v1.3.0 [INFO] [stderr] Checking normalize-line-endings v0.3.0 [INFO] [stderr] Checking rand_distr v0.5.1 [INFO] [stderr] Checking typed-path v0.12.3 [INFO] [stderr] Checking twox-hash v2.1.2 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling ouroboros_macro v0.18.5 [INFO] [stderr] Compiling typed-builder-macro v0.22.0 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling enum_dispatch v0.3.13 [INFO] [stderr] Compiling assert_cmd v2.2.1 [INFO] [stderr] Checking md5 v0.8.0 [INFO] [stderr] Checking difflib v0.4.0 [INFO] [stderr] Checking fastrand v2.4.1 [INFO] [stderr] Checking murmurhash3 v0.0.5 [INFO] [stderr] Checking termtree v0.5.1 [INFO] [stderr] Checking replace_with v0.1.8 [INFO] [stderr] Checking predicates-tree v1.0.13 [INFO] [stderr] Checking predicates v3.1.4 [INFO] [stderr] Checking tempfile v3.27.0 [INFO] [stderr] Checking zip v7.2.0 [INFO] [stderr] Compiling rust_decimal_macros v1.40.0 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking bgzip v0.3.1 [INFO] [stderr] Checking nalgebra v0.33.3 [INFO] [stderr] Checking ouroboros v0.18.5 [INFO] [stderr] Checking typed-builder v0.22.0 [INFO] [stderr] Checking piz v0.5.1 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Checking wait-timeout v0.2.1 [INFO] [stderr] Checking simple-error v0.3.2 [INFO] [stderr] Checking histogram v0.11.5 [INFO] [stderr] Checking assert_matches v1.5.0 [INFO] [stderr] Checking env_logger v0.11.10 [INFO] [stderr] Checking rustworkx-core v0.17.1 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Compiling pyo3-macros v0.28.3 [INFO] [stderr] Checking liblzma v0.3.6 [INFO] [stderr] Checking vec-collections v0.4.3 [INFO] [stderr] Compiling librocksdb-sys v0.17.3+10.4.2 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking niffler v3.0.0 [INFO] [stderr] Checking needletail v0.7.3 [INFO] [stderr] error: could not compile `nalgebra` (lib) [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/e1613686e0efc80a1a18b1263625450a8de3fb04/bin/rustc --crate-name nalgebra --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/nalgebra-0.33.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="matrixmultiply"' --cfg 'feature="rand"' --cfg 'feature="rand-no-std"' --cfg 'feature="rand-package"' --cfg 'feature="rand_distr"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alga", "alloc", "arbitrary", "bytemuck", "compare", "convert-bytemuck", "convert-glam014", "convert-glam015", "convert-glam016", "convert-glam017", "convert-glam018", "convert-glam019", "convert-glam020", "convert-glam021", "convert-glam022", "convert-glam023", "convert-glam024", "convert-glam025", "convert-glam027", "convert-glam028", "convert-glam029", "convert-glam030", "convert-mint", "debug", "default", "glam014", "glam015", "glam016", "glam017", "glam018", "glam019", "glam020", "glam021", "glam022", "glam023", "glam024", "glam025", "glam027", "glam028", "glam029", "glam030", "io", "libm", "libm-force", "macros", "matrixcompare-core", "matrixmultiply", "mint", "nalgebra-macros", "pest", "pest_derive", "proptest", "proptest-support", "quickcheck", "rand", "rand-no-std", "rand-package", "rand_distr", "rayon", "rkyv", "rkyv-safe-deser", "rkyv-serialize", "rkyv-serialize-no-std", "serde", "serde-serialize", "serde-serialize-no-std", "slow-tests", "sparse", "std"))' -C metadata=6e8b9aa9b4fb0245 -C extra-filename=-7387a96bbc361d48 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-a45fabaa4284413c.rmeta --extern matrixmultiply=/opt/rustwide/target/debug/deps/libmatrixmultiply-a91009c4ca970fb3.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-1f32dc3652f068fd.rmeta --extern num_rational=/opt/rustwide/target/debug/deps/libnum_rational-aceca26fe39d9be2.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-b0ab957f0a86187b.rmeta --extern rand_package=/opt/rustwide/target/debug/deps/librand-11e779e317a6ac5a.rmeta --extern rand_distr=/opt/rustwide/target/debug/deps/librand_distr-1bbd600c3df20c78.rmeta --extern simba=/opt/rustwide/target/debug/deps/libsimba-287641e1701a173c.rmeta --extern typenum=/opt/rustwide/target/debug/deps/libtypenum-5349db567ce12ad3.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill) [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "cbafea5a6af3d2b281625924bee805d2050ca0bab8f65daa720adc766a4719b5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cbafea5a6af3d2b281625924bee805d2050ca0bab8f65daa720adc766a4719b5", kill_on_drop: false }` [INFO] [stdout] cbafea5a6af3d2b281625924bee805d2050ca0bab8f65daa720adc766a4719b5