[INFO] fetching crate deepbiop-cli 0.1.16...
[INFO] checking deepbiop-cli-0.1.16 against master#e1613686e0efc80a1a18b1263625450a8de3fb04 for pr-154492-1
[INFO] extracting crate deepbiop-cli 0.1.16 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.16 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.16 on toolchain e1613686e0efc80a1a18b1263625450a8de3fb04
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.16 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.18.0
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[INFO] [stderr]   Downloaded deepbiop-bam v0.1.16
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[INFO] [stderr]   Downloaded deepbiop-core v0.1.16
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0f405a4fce7051770e71e0a5bb62d3e9b17e73ab676d91a8e14d0bfdcb7110fa
[INFO] running `Command { std: "docker" "start" "-a" "0f405a4fce7051770e71e0a5bb62d3e9b17e73ab676d91a8e14d0bfdcb7110fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0f405a4fce7051770e71e0a5bb62d3e9b17e73ab676d91a8e14d0bfdcb7110fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0f405a4fce7051770e71e0a5bb62d3e9b17e73ab676d91a8e14d0bfdcb7110fa", kill_on_drop: false }`
[INFO] [stdout] 0f405a4fce7051770e71e0a5bb62d3e9b17e73ab676d91a8e14d0bfdcb7110fa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+e1613686e0efc80a1a18b1263625450a8de3fb04" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4f4b99c593329f3b3c557b7e0a271677f87c28528e148f09281967a56c1661e5
[INFO] running `Command { std: "docker" "start" "-a" "4f4b99c593329f3b3c557b7e0a271677f87c28528e148f09281967a56c1661e5", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]     Checking cfg-if v1.0.4
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking bitflags v2.10.0
[INFO] [stderr]     Checking hashbrown v0.16.0
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
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[INFO] [stderr]    Compiling cc v1.2.44
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[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
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[INFO] [stderr]    Compiling rand v0.8.5
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[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling memoffset v0.9.1
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[INFO] [stderr]     Checking noodles-bgzf v0.43.0
[INFO] [stderr]    Compiling rustpython-parser-vendored v0.4.0
[INFO] [stderr]    Compiling pyo3 v0.27.1
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking serde_spanned v1.0.3
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
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[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling numpy v0.27.0
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]     Checking colorchoice v1.0.4
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]     Checking toml_writer v1.0.4
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking anstyle-query v1.1.4
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]     Checking rustc-hash v2.1.1
[INFO] [stderr]     Checking integer-encoding v3.0.4
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking brotli v8.0.2
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]     Checking lz4_flex v0.11.5
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking libloading v0.8.9
[INFO] [stderr]     Checking linux-raw-sys v0.11.0
[INFO] [stderr]     Checking maplit v1.0.2
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]     Checking inventory v0.3.21
[INFO] [stderr]     Checking lexical v7.0.5
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking clap_lex v0.7.6
[INFO] [stderr]     Checking smawk v0.3.2
[INFO] [stderr]    Compiling toml_parser v1.0.4
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking unicode-linebreak v0.1.5
[INFO] [stderr]     Checking clap_builder v4.5.51
[INFO] [stderr]     Checking colored v3.0.0
[INFO] [stderr]    Compiling object v0.37.3
[INFO] [stderr]     Checking textwrap v0.16.2
[INFO] [stderr]    Compiling cfg_aliases v0.2.1
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]     Checking gimli v0.32.3
[INFO] [stderr]     Checking noodles-core v0.18.0
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling toml_edit v0.23.7
[INFO] [stderr]     Checking noodles-csi v0.51.0
[INFO] [stderr]     Checking toml v0.9.8
[INFO] [stderr]     Checking noodles-sam v0.79.0
[INFO] [stderr]     Checking noodles-fasta v0.56.0
[INFO] [stderr]    Compiling proc-macro-crate v3.4.0
[INFO] [stderr]     Checking noodles-fastq v0.21.0
[INFO] [stderr]    Compiling darling_core v0.21.3
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]     Checking env_filter v0.1.4
[INFO] [stderr]     Checking uuid v1.18.1
[INFO] [stderr]     Checking jiff v0.2.15
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/e1613686e0efc80a1a18b1263625450a8de3fb04/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.108/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=305e124187629b01 -C extra-filename=-4574c699cb274bd0 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-43e32a25692bf44a.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-2c160e35ae4bb1e8.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-9533002ac35f5809.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/e1613686e0efc80a1a18b1263625450a8de3fb04/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-8.0.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "billing", "default", "disable-timer", "disallow_large_window_size", "external-literal-probability", "ffi-api", "float64", "floating_point_context_mixing", "no-stdlib-ffi-binding", "pass-through-ffi-panics", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=fbe35411e319994e -C extra-filename=-bb56fd341e28385b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-7b1bd6f28b6396be.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-c67ef39ef9e0d8f1.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-b49ac68ef342ea51.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "4f4b99c593329f3b3c557b7e0a271677f87c28528e148f09281967a56c1661e5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4f4b99c593329f3b3c557b7e0a271677f87c28528e148f09281967a56c1661e5", kill_on_drop: false }`
[INFO] [stdout] 4f4b99c593329f3b3c557b7e0a271677f87c28528e148f09281967a56c1661e5
