[INFO] cloning repository https://github.com/berquist/rchem [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/berquist/rchem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 57f724f383ab99a60709a184a56d610dd4d96955 [INFO] testing berquist/rchem against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fberquist%2Frchem" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/berquist/rchem [INFO] finished tweaking git repo https://github.com/berquist/rchem [INFO] tweaked toml for git repo https://github.com/berquist/rchem written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/berquist/rchem on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/berquist/rchem already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded zmij v1.0.0 [INFO] [stderr] Downloaded cauchy v0.4.0 [INFO] [stderr] Downloaded katexit v0.1.4 [INFO] [stderr] Downloaded lax v0.18.0 [INFO] [stderr] Downloaded criterion-plot v0.8.2 [INFO] [stderr] Downloaded chemfiles v0.10.41 [INFO] [stderr] Downloaded GSL-sys v3.0.0 [INFO] [stderr] Downloaded half v2.5.0 [INFO] [stderr] Downloaded python3-sys v0.7.2 [INFO] [stderr] Downloaded criterion v0.8.2 [INFO] [stderr] Downloaded ndarray-linalg v0.18.1 [INFO] [stderr] Downloaded ndarray v0.17.2 [INFO] [stderr] Downloaded cpython v0.7.2 [INFO] [stderr] Downloaded GSL v7.0.0 [INFO] [stderr] Downloaded chemfiles-sys v0.10.41 [INFO] [stderr] Downloaded netlib-src v0.9.0 [INFO] [stderr] Downloaded lapack-sys v0.15.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0b3eb71ce813f44e67959d6d7cf6f2de9152ce8af29f0e0b0eb3ad1162e65297 [INFO] running `Command { std: "docker" "start" "-a" "0b3eb71ce813f44e67959d6d7cf6f2de9152ce8af29f0e0b0eb3ad1162e65297", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0b3eb71ce813f44e67959d6d7cf6f2de9152ce8af29f0e0b0eb3ad1162e65297", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0b3eb71ce813f44e67959d6d7cf6f2de9152ce8af29f0e0b0eb3ad1162e65297", kill_on_drop: false }` [INFO] [stdout] 0b3eb71ce813f44e67959d6d7cf6f2de9152ce8af29f0e0b0eb3ad1162e65297 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3ff47c5607d4142d1774d5506d3e58dfa62216ec2db7ba568630996ff182448a [INFO] running `Command { std: "docker" "start" "-a" "3ff47c5607d4142d1774d5506d3e58dfa62216ec2db7ba568630996ff182448a", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.171 [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling zerocopy v0.8.24 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling prettyplease v0.2.31 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling GSL-sys v3.0.0 [INFO] [stderr] Compiling cmake v0.1.58 [INFO] [stderr] Compiling libloading v0.8.6 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling bindgen v0.72.1 [INFO] [stderr] Compiling bitflags v2.9.0 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling rustc-hash v2.1.1 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling cpython v0.7.2 [INFO] [stderr] Compiling zmij v1.0.0 [INFO] [stderr] Compiling factorial v0.2.0 (https://github.com/berquist/factorial?rev=3b33d3e971f771b60f8151aae57db824600d9292#3b33d3e9) [INFO] [stderr] Compiling arrayvec v0.7.6 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling netlib-src v0.9.0 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling chemfiles-sys v0.10.41 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling cblas-sys v0.1.4 [INFO] [stderr] Compiling lapack-sys v0.15.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] error: could not compile `GSL-sys` (lib) due to 1 previous error [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-Wl,--version-script=/opt/rustwide/target/debug/deps/rustcEbvBPR/list" "-Wl,--no-undefined-version" "-m64" "/opt/rustwide/target/debug/deps/rustcEbvBPR/symbols.o" "<1 object files omitted>" "/opt/rustwide/target/debug/deps/rustcEbvBPR/rmeta.o" "-Wl,--as-needed" "-Wl,-Bdynamic" "-lgsl" "-lgslcblas" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/liblibc-18586681d4adba10.rlib" "-Wl,-Bdynamic" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-eaa78b24106cd0ea.so" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-*.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/opt/rustwide/target/debug/deps/rustcEbvBPR/raw-dylibs" "-B/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libgsl_sys-96d36360e865ffe4.so" "-shared" "-Wl,-soname=libgsl_sys-96d36360e865ffe4.so" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: error: unable to find library -lgsl [INFO] [stdout] rust-lld: error: unable to find library -lgslcblas [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.10.41` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-323885e37bf39839/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- trying to download https://github.com/chemfiles/chemfiles-prebuilt/releases/download/v0.10.4/chemfiles-static.v0.10.4.x86_64-linux-gnu.tar.gz [INFO] [stderr] -- failed to download prebuilt chemfiles, building from sources [INFO] [stderr] -- The C compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Unpacking bzip2 sources [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking pugixml sources [INFO] [stderr] -- Unpacking gemmi sources [INFO] [stderr] -- Configuring done (103.2s) [INFO] [stderr] -- Generating done (0.4s) [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build [INFO] [stderr] [ 0%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o [INFO] [stderr] [ 1%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o [INFO] [stderr] [ 2%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o [INFO] [stderr] [ 3%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o [INFO] [stderr] [ 3%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_fast.c.o [INFO] [stderr] [ 4%] Building CXX object chemfiles/external/CMakeFiles/pugixml.dir/pugixml/src/pugixml.cpp.o [INFO] [stderr] [ 5%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_table.c.o [INFO] [stderr] [ 5%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o [INFO] [stderr] [ 6%] Building CXX object /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 7%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o [INFO] [stderr] [ 7%] Building CXX object /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/fmt/CMakeFiles/fmt.dir/src/os.cc.o [INFO] [stderr] [ 7%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 8%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwt.c.o [INFO] [stderr] [ 8%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o [INFO] [stderr] [ 9%] Building CXX object /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] [ 9%] Building C object 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[INFO] [stderr] [INFO] [stderr] For compatibility with older versions of CMake, option is clearing the [INFO] [stderr] normal variable 'BUILD_SHARED_LIBS'. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/zlib/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/lzma/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/bzip2/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/fmt/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/tng/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build/chemfiles/external/molfiles/CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build" && LC_ALL="C" MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "/opt/rustwide/target/debug/build/chemfiles-sys-6a3455379517c721/out/build" "--target" "install" "--config" "Debug" [INFO] [stderr] In file included from /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.10.41/chemfiles/src/FormatFactory.cpp:40: [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.10.41/chemfiles/include/chemfiles/formats/SMI.hpp: In constructor 'chemfiles::SMIFormat::SMIFormat(const std::string&, chemfiles::File::Mode, chemfiles::File::Compression)': [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.10.41/chemfiles/include/chemfiles/formats/SMI.hpp:35:29: warning: redundant move in initialization [-Wredundant-move] [INFO] [stderr] 35 | TextFormat(std::move(path), mode, compression) {} [INFO] [stderr] | ~~~~~~~~~^~~~~~ [INFO] [stderr] /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.10.41/chemfiles/include/chemfiles/formats/SMI.hpp:35:29: note: remove 'std::move' call [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:146: chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 1 [INFO] [stderr] gmake[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:90: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:244: chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o] Error 1 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:214: chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:136: all] Error 2 [INFO] [stderr] [INFO] [stderr] thread 'main' (584) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.58/src/lib.rs:1132:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5647d5bf2c2a - std[e72de78501789eb0]::backtrace_rs::backtrace::libunwind::trace [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x5647d5bf2c2a - std[e72de78501789eb0]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x5647d5bf2c2a - std[e72de78501789eb0]::sys::backtrace::_print_fmt [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/sys/backtrace.rs:74:9 [INFO] [stderr] 3: 0x5647d5bf2c2a - <::print::DisplayBacktrace as core[6aaeda2c7ad07a48]::fmt::Display>::fmt [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/sys/backtrace.rs:44:26 [INFO] [stderr] 4: 0x5647d5c06bfa - ::fmt [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/core/src/fmt/rt.rs:152:76 [INFO] [stderr] 5: 0x5647d5c06bfa - core[6aaeda2c7ad07a48]::fmt::write [INFO] [stderr] 6: 0x5647d5bf8b42 - std[e72de78501789eb0]::io::default_write_fmt:: [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5647d5bf8b42 - ::write_fmt [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/io/mod.rs:1994:13 [INFO] [stderr] 8: 0x5647d5bd45bf - ::print [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/sys/backtrace.rs:47:9 [INFO] [stderr] 9: 0x5647d5bd45bf - std[e72de78501789eb0]::panicking::default_hook::{closure#0} [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:292:27 [INFO] [stderr] 10: 0x5647d5bed9b1 - std[e72de78501789eb0]::panicking::default_hook [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:319:9 [INFO] [stderr] 11: 0x5647d5bedb6b - std[e72de78501789eb0]::panicking::panic_with_hook [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:825:13 [INFO] [stderr] 12: 0x5647d5bd4678 - std[e72de78501789eb0]::panicking::panic_handler::{closure#0} [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:698:13 [INFO] [stderr] 13: 0x5647d5bcbf69 - std[e72de78501789eb0]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/sys/backtrace.rs:182:18 [INFO] [stderr] 14: 0x5647d5bd4fdd - __rustc[78a4cf188af856fc]::rust_begin_unwind [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:689:5 [INFO] [stderr] 15: 0x5647d5c0738c - core[6aaeda2c7ad07a48]::panicking::panic_fmt [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/core/src/panicking.rs:80:14 [INFO] [stderr] 16: 0x5647d5b55d87 - cmake[34f34eab53b2d077]::fail [INFO] [stderr] 17: 0x5647d5b55a13 - cmake[34f34eab53b2d077]::run [INFO] [stderr] 18: 0x5647d5b5ba94 - ::build [INFO] [stderr] 19: 0x5647d5b4603f - build_script_build[1a31ce69629118e3]::build_chemfiles [INFO] [stderr] 20: 0x5647d5b462d3 - build_script_build[1a31ce69629118e3]::main [INFO] [stderr] 21: 0x5647d5b47843 - >::call_once [INFO] [stderr] 22: 0x5647d5b45556 - std[e72de78501789eb0]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stderr] 23: 0x5647d5b45569 - std[e72de78501789eb0]::rt::lang_start::<()>::{closure#0} [INFO] [stderr] 24: 0x5647d5bec9b4 - <&dyn core[6aaeda2c7ad07a48]::ops::function::Fn<(), Output = i32> + core[6aaeda2c7ad07a48]::marker::Sync + core[6aaeda2c7ad07a48]::panic::unwind_safe::RefUnwindSafe as core[6aaeda2c7ad07a48]::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 25: 0x5647d5bec9b4 - std[e72de78501789eb0]::panicking::catch_unwind::do_call::<&dyn core[6aaeda2c7ad07a48]::ops::function::Fn<(), Output = i32> + core[6aaeda2c7ad07a48]::marker::Sync + core[6aaeda2c7ad07a48]::panic::unwind_safe::RefUnwindSafe, i32> [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:581:40 [INFO] [stderr] 26: 0x5647d5bec9b4 - std[e72de78501789eb0]::panicking::catch_unwind:: + core[6aaeda2c7ad07a48]::marker::Sync + core[6aaeda2c7ad07a48]::panic::unwind_safe::RefUnwindSafe> [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:544:19 [INFO] [stderr] 27: 0x5647d5bec9b4 - std[e72de78501789eb0]::panic::catch_unwind::<&dyn core[6aaeda2c7ad07a48]::ops::function::Fn<(), Output = i32> + core[6aaeda2c7ad07a48]::marker::Sync + core[6aaeda2c7ad07a48]::panic::unwind_safe::RefUnwindSafe, i32> [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x5647d5bec9b4 - std[e72de78501789eb0]::rt::lang_start_internal::{closure#0} [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/rt.rs:175:24 [INFO] [stderr] 29: 0x5647d5bec9b4 - std[e72de78501789eb0]::panicking::catch_unwind::do_call:: [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:581:40 [INFO] [stderr] 30: 0x5647d5bec9b4 - std[e72de78501789eb0]::panicking::catch_unwind:: [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panicking.rs:544:19 [INFO] [stderr] 31: 0x5647d5bec9b4 - std[e72de78501789eb0]::panic::catch_unwind:: [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/panic.rs:359:14 [INFO] [stderr] 32: 0x5647d5bec9b4 - std[e72de78501789eb0]::rt::lang_start_internal [INFO] [stderr] at /rustc/dec9417b8611e34e787a3e4c37686b5131f9e5c5/library/std/src/rt.rs:171:5 [INFO] [stderr] 33: 0x5647d5b45541 - std[e72de78501789eb0]::rt::lang_start::<()> [INFO] [stderr] 34: 0x5647d5b478f5 - main [INFO] [stderr] 35: 0x779af9c861ca - [INFO] [stderr] 36: 0x779af9c8628b - __libc_start_main [INFO] [stderr] 37: 0x5647d5b444e5 - _start [INFO] [stderr] 38: 0x0 - [INFO] running `Command { std: "docker" "inspect" "3ff47c5607d4142d1774d5506d3e58dfa62216ec2db7ba568630996ff182448a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3ff47c5607d4142d1774d5506d3e58dfa62216ec2db7ba568630996ff182448a", kill_on_drop: false }` [INFO] [stdout] 3ff47c5607d4142d1774d5506d3e58dfa62216ec2db7ba568630996ff182448a