[INFO] cloning repository https://github.com/TTTPOB/deeptools-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TTTPOB/deeptools-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTTTPOB%2Fdeeptools-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTTTPOB%2Fdeeptools-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 244d32db609df1f8d1df0444683862a036fa8c55 [INFO] testing TTTPOB/deeptools-rs against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTTTPOB%2Fdeeptools-rs" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/TTTPOB/deeptools-rs [INFO] finished tweaking git repo https://github.com/TTTPOB/deeptools-rs [INFO] tweaked toml for git repo https://github.com/TTTPOB/deeptools-rs written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/TTTPOB/deeptools-rs on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/TTTPOB/deeptools-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b2d70e4878029aba4dc3ff44580ae4695aa3336d54ed3dc361c9dde71e34442e [INFO] running `Command { std: "docker" "start" "-a" "b2d70e4878029aba4dc3ff44580ae4695aa3336d54ed3dc361c9dde71e34442e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b2d70e4878029aba4dc3ff44580ae4695aa3336d54ed3dc361c9dde71e34442e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b2d70e4878029aba4dc3ff44580ae4695aa3336d54ed3dc361c9dde71e34442e", kill_on_drop: false }` [INFO] [stdout] b2d70e4878029aba4dc3ff44580ae4695aa3336d54ed3dc361c9dde71e34442e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2e7fc5a9e29f369a8be0f07f8535ab4d6ef30e28eef8aa76494e1432b18cb5c8 [INFO] running `Command { std: "docker" "start" "-a" "2e7fc5a9e29f369a8be0f07f8535ab4d6ef30e28eef8aa76494e1432b18cb5c8", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling libc v0.2.177 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling icu_properties_data v2.1.1 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling bytemuck v1.24.0 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling libdeflate-sys v0.13.0 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling anstream v0.6.21 [INFO] [stderr] Compiling clap_lex v0.7.6 [INFO] [stderr] Compiling linux-raw-sys v0.11.0 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling indexmap v2.12.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling rustls-native-certs v0.6.3 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling num_cpus v1.17.0 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling clap_builder v4.5.50 [INFO] [stderr] Compiling syn v2.0.108 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling hashbrown v0.15.5 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling zlib-rs v0.5.2 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling simd-adler32 v0.3.7 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling ufmt-write v0.1.0 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling simba v0.9.1 [INFO] [stderr] Compiling petgraph v0.8.3 [INFO] [stderr] Compiling libdeflater v0.13.0 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling csv v1.4.0 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling rustls v0.21.12 [INFO] [stderr] Compiling tempfile v3.23.0 [INFO] [stderr] Compiling ordered-float v5.1.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling byteordered v0.6.0 [INFO] [stderr] Compiling tokio v1.48.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling index_list v0.2.17 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Compiling libz-rs-sys v0.5.2 [INFO] [stderr] Compiling sct v0.7.1 [INFO] [stderr] Compiling rustls-webpki v0.101.7 [INFO] [stderr] Compiling ufmt-macros v0.3.0 [INFO] [stderr] Compiling webpki v0.22.4 [INFO] [stderr] Compiling flate2 v1.1.5 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling ufmt v0.2.0 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.1 [INFO] [stderr] Compiling zerovec-derive v0.11.2 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.1 [INFO] [stderr] Compiling clap v4.5.50 [INFO] [stderr] Compiling zerovec v0.11.5 [INFO] [stderr] Compiling zerotrie v0.2.3 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling tinystr v0.8.2 [INFO] [stderr] Compiling potential_utf v0.1.4 [INFO] [stderr] Compiling icu_collections v2.1.1 [INFO] [stderr] Compiling icu_locale_core v2.1.1 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling icu_provider v2.1.1 [INFO] [stderr] Compiling icu_normalizer v2.1.1 [INFO] [stderr] Compiling icu_properties v2.1.1 [INFO] [stderr] Compiling futures-executor v0.3.31 [INFO] [stderr] Compiling futures v0.3.31 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Compiling attohttpc v0.25.0 [INFO] [stderr] Compiling bigtools v0.5.6 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v3.0.0 [INFO] [stderr] Compiling compute_matrix_rs v0.2.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 18s [INFO] running `Command { std: "docker" "inspect" "2e7fc5a9e29f369a8be0f07f8535ab4d6ef30e28eef8aa76494e1432b18cb5c8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2e7fc5a9e29f369a8be0f07f8535ab4d6ef30e28eef8aa76494e1432b18cb5c8", kill_on_drop: false }` [INFO] [stdout] 2e7fc5a9e29f369a8be0f07f8535ab4d6ef30e28eef8aa76494e1432b18cb5c8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 37b97761cae685c21660295b9dec023574204db31fec8c7f80646ee4d4453e91 [INFO] running `Command { std: "docker" "start" "-a" "37b97761cae685c21660295b9dec023574204db31fec8c7f80646ee4d4453e91", kill_on_drop: false }` [INFO] [stderr] Compiling compute_matrix_rs v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: struct `TestBin` is never constructed [INFO] [stdout] --> src/pipeline/core/mod.rs:922:12 [INFO] [stdout] | [INFO] [stdout] 922 | struct TestBin { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `TestPlan` is never constructed [INFO] [stdout] --> src/pipeline/core/mod.rs:942:12 [INFO] [stdout] | [INFO] [stdout] 942 | struct TestPlan { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.56s [INFO] running `Command { std: "docker" "inspect" "37b97761cae685c21660295b9dec023574204db31fec8c7f80646ee4d4453e91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "37b97761cae685c21660295b9dec023574204db31fec8c7f80646ee4d4453e91", kill_on_drop: false }` [INFO] [stdout] 37b97761cae685c21660295b9dec023574204db31fec8c7f80646ee4d4453e91 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 6f8f3443747cb4fa3e257cb78f07849ace51670a2b412fa6b1bc694043b36e6f [INFO] running `Command { std: "docker" "start" "-a" "6f8f3443747cb4fa3e257cb78f07849ace51670a2b412fa6b1bc694043b36e6f", kill_on_drop: false }` [INFO] [stderr] warning: struct `TestBin` is never constructed [INFO] [stderr] --> src/pipeline/core/mod.rs:922:12 [INFO] [stderr] | [INFO] [stderr] 922 | struct TestBin { [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: struct `TestPlan` is never constructed [INFO] [stderr] --> src/pipeline/core/mod.rs:942:12 [INFO] [stderr] | [INFO] [stderr] 942 | struct TestPlan { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `compute_matrix_rs` (lib test) generated 2 warnings [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.36s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/compute_matrix_rs-008e376ed97a7ef0) [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test io::readers::bed::tests::parses_basic_bed_line ... ok [INFO] [stdout] test io::readers::bed::tests::reader_skips_comments_and_blank_lines ... ok [INFO] [stdout] test io::readers::bed::tests::extracts_bed12_exons ... ok [INFO] [stdout] test pipeline::zones::tests::reference_plan_negative_strand ... ok [INFO] [stdout] test pipeline::zones::tests::metagene_scale_regions_collapses_introns ... ok [INFO] [stdout] test pipeline::zones::tests::reference_plan_positive_strand ... ok [INFO] [stdout] test pipeline::core::tests::aggregate_slice_ignores_nans ... ok [INFO] [stdout] test pipeline::zones::tests::scale_plan_positive_strand ... ok [INFO] [stdout] test io::readers::gtf::tests::attaches_exons_even_if_seen_first ... ok [INFO] [stdout] test io::readers::gtf::tests::parses_basic_transcript ... ok [INFO] [stdout] test pipeline::zones::tests::scale_plan_negative_strand ... ok [INFO] [stdout] test pipeline::core::tests::index_from_coordinate_bounds_checks ... ok [INFO] [stdout] test io::readers::gtf::tests::skips_features_without_ids ... ok [INFO] [stdout] test io::readers::bed::tests::keeps_invalid_score_and_strand_as_raw_strings ... ok [INFO] [stdout] test pipeline::zones::tests::metagene_reference_point_skips_introns ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/compute_matrix_rs-70b46ae8cf4f53dd) [INFO] [stdout] [INFO] [stderr] Doc-tests compute_matrix_rs [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "6f8f3443747cb4fa3e257cb78f07849ace51670a2b412fa6b1bc694043b36e6f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6f8f3443747cb4fa3e257cb78f07849ace51670a2b412fa6b1bc694043b36e6f", kill_on_drop: false }` [INFO] [stdout] 6f8f3443747cb4fa3e257cb78f07849ace51670a2b412fa6b1bc694043b36e6f