[INFO] fetching crate xloci 0.0.4...
[INFO] testing xloci-0.0.4 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-2
[INFO] extracting crate xloci 0.0.4 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate xloci 0.0.4
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate xloci 0.0.4
[INFO] tweaked toml for crates.io crate xloci 0.0.4 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate xloci 0.0.4 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate xloci 0.0.4 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 99929adfb6b6e50066ac061446389b67cd1a914b9a6634f96f673111b86a8c82
[INFO] running `Command { std: "docker" "start" "-a" "99929adfb6b6e50066ac061446389b67cd1a914b9a6634f96f673111b86a8c82", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "99929adfb6b6e50066ac061446389b67cd1a914b9a6634f96f673111b86a8c82", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "99929adfb6b6e50066ac061446389b67cd1a914b9a6634f96f673111b86a8c82", kill_on_drop: false }`
[INFO] [stdout] 99929adfb6b6e50066ac061446389b67cd1a914b9a6634f96f673111b86a8c82
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 082b8a4ff74835ceb705f68f0bfec7c60a26b5f713d4fe831d5c83b9377b8f2b
[INFO] running `Command { std: "docker" "start" "-a" "082b8a4ff74835ceb705f68f0bfec7c60a26b5f713d4fe831d5c83b9377b8f2b", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.178
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling time-core v0.1.8
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling simd-adler32 v0.3.8
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling powerfmt v0.2.0
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling num-conv v0.2.0
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling num_threads v0.1.7
[INFO] [stderr]    Compiling itoa v1.0.17
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling time-macros v0.2.27
[INFO] [stderr]    Compiling deranged v0.5.6
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling clap_lex v1.0.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling colored v3.1.1
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling syn v2.0.116
[INFO] [stderr]    Compiling clap_builder v4.5.59
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling twobit v0.2.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling memmap2 v0.9.10
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling time v0.3.47
[INFO] [stderr]    Compiling tempfile v3.23.0
[INFO] [stderr]    Compiling simple_logger v5.2.0
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling genepred v0.0.11
[INFO] [stderr]    Compiling clap v4.5.59
[INFO] [stderr]    Compiling xloci v0.0.4 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.49s
[INFO] running `Command { std: "docker" "inspect" "082b8a4ff74835ceb705f68f0bfec7c60a26b5f713d4fe831d5c83b9377b8f2b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "082b8a4ff74835ceb705f68f0bfec7c60a26b5f713d4fe831d5c83b9377b8f2b", kill_on_drop: false }`
[INFO] [stdout] 082b8a4ff74835ceb705f68f0bfec7c60a26b5f713d4fe831d5c83b9377b8f2b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fd8d36eba312621f44dd450c99d8f2873381cb0ee1dbac9d8e0f3ff8173a6efa
[INFO] running `Command { std: "docker" "start" "-a" "fd8d36eba312621f44dd450c99d8f2873381cb0ee1dbac9d8e0f3ff8173a6efa", kill_on_drop: false }`
[INFO] [stderr]    Compiling xloci v0.0.4 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.39s
[INFO] running `Command { std: "docker" "inspect" "fd8d36eba312621f44dd450c99d8f2873381cb0ee1dbac9d8e0f3ff8173a6efa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fd8d36eba312621f44dd450c99d8f2873381cb0ee1dbac9d8e0f3ff8173a6efa", kill_on_drop: false }`
[INFO] [stdout] fd8d36eba312621f44dd450c99d8f2873381cb0ee1dbac9d8e0f3ff8173a6efa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 715ddda663d49b28f947113f1cb3d0f3ffce556eaf9e790fde58388e9e54bf5f
[INFO] running `Command { std: "docker" "start" "-a" "715ddda663d49b28f947113f1cb3d0f3ffce556eaf9e790fde58388e9e54bf5f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/xloci-9e5d85a735bb459e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/xloci-094258d7d10e5a1e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/io_matrix.rs (/opt/rustwide/target/debug/deps/io_matrix-4bdfdfb1d05f88a2)
[INFO] [stdout] 
[INFO] [stdout] running 20 tests
[INFO] [stdout] test test_as_tsv_add_tab_with_single_flank_uses_three_columns ... ok
[INFO] [stdout] test test_generic_id_joined_uses_feature_bounds_without_flanks ... ok
[INFO] [stdout] test test_split_extraction_as_tsv_add_tab_uses_piece_flanks ... ok
[INFO] [stdout] test test_generic_id_split_uses_piece_bounds_without_flanks ... ok
[INFO] [stdout] test test_fa_gtf_gz ... ok
[INFO] [stdout] test test_fa_gff ... ok
[INFO] [stdout] test test_2bit_gff_gz ... ok
[INFO] [stdout] test test_2bit_gtf ... ok
[INFO] [stdout] test test_as_tsv_add_tab_with_both_flanks ... ok
[INFO] [stdout] test test_fa_bed ... ok
[INFO] [stdout] test test_fa_bed_gz ... ok
[INFO] [stdout] test test_2bit_bed_gz ... ok
[INFO] [stdout] test test_2bit_bed ... ok
[INFO] [stdout] test test_split_extraction_cds_and_utr_piece_names ... ok
[INFO] [stdout] test test_split_extraction_transcript_uses_mixed_piece_names ... ok
[INFO] [stdout] test test_split_extraction_minus_strand_uses_transcript_order ... ok
[INFO] [stdout] test test_stdin_fa_bed ... ok
[INFO] [stdout] test test_stdin_2bit_gff_gz ... ok
[INFO] [stdout] test test_split_extraction_is_incompatible_with_translate ... ok
[INFO] [stdout] test test_add_tab_requires_tsv_and_flanks ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 20 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests xloci
[INFO] [stdout] 
[INFO] [stdout] running 54 tests
[INFO] [stdout] test src/cli.rs - cli::Args (line 112) ... ignored
[INFO] [stdout] test src/cli.rs - cli::Feature (line 162) ... ignored
[INFO] [stdout] test src/cli.rs - cli::Feature (line 187) ... ignored
[INFO] [stdout] test src/core.rs - core::ExtractedFeature (line 204) ... ignored
[INFO] [stdout] test src/core.rs - core::ExtractedFeature::bounds (line 384) ... ignored
[INFO] [stdout] test src/core.rs - core::ExtractedFeature::is_empty (line 253) ... ignored
[INFO] [stdout] test src/core.rs - core::ExtractedFeature::joined_core (line 271) ... ignored
[INFO] [stdout] test src/core.rs - core::ExtractedFeature::joined_sequence (line 296) ... ignored
[INFO] [stdout] test src/core.rs - core::ExtractedFeature::split_entries (line 329) ... ignored
[INFO] [stdout] test src/core.rs - core::FeaturePiece (line 171) ... ignored
[INFO] [stdout] test src/core.rs - core::OutputConfig (line 88) ... ignored
[INFO] [stdout] test src/core.rs - core::OutputFormat (line 41) ... ignored
[INFO] [stdout] test src/core.rs - core::OutputFormat::extension (line 62) ... ignored
[INFO] [stdout] test src/core.rs - core::PieceKind (line 119) ... ignored
[INFO] [stdout] test src/core.rs - core::PieceKind::suffix (line 142) ... ignored
[INFO] [stdout] test src/core.rs - core::RangeError (line 952) ... ignored
[INFO] [stdout] test src/core.rs - core::RangeError (line 976) ... ignored
[INFO] [stdout] test src/core.rs - core::RegionFormat (line 1762) ... ignored
[INFO] [stdout] test src/core.rs - core::SplitEntry (line 231) ... ignored
[INFO] [stdout] test src/core.rs - core::collect_2bit_sequences (line 1943) ... ignored
[INFO] [stdout] test src/core.rs - core::complement_base (line 1372) ... ignored
[INFO] [stdout] test src/core.rs - core::detect_region_format (line 1783) ... ignored
[INFO] [stdout] test src/core.rs - core::extract_feature (line 1118) ... ignored
[INFO] [stdout] test src/core.rs - core::extract_range (line 1068) ... ignored
[INFO] [stdout] test src/core.rs - core::feature_intervals (line 1012) ... ignored
[INFO] [stdout] test src/core.rs - core::from_2bit (line 1903) ... ignored
[INFO] [stdout] test src/core.rs - core::from_2bit_buf (line 1924) ... ignored
[INFO] [stdout] test src/core.rs - core::from_fa (line 1974) ... ignored
[INFO] [stdout] test src/core.rs - core::from_stdin (line 1848) ... ignored
[INFO] [stdout] test src/core.rs - core::generic_identifier (line 1458) ... ignored
[INFO] [stdout] test src/core.rs - core::get_sequences (line 1821) ... ignored
[INFO] [stdout] test src/core.rs - core::is_compressed_path (line 699) ... ignored
[INFO] [stdout] test src/core.rs - core::is_unambiguous_dna_base (line 2104) ... ignored
[INFO] [stdout] test src/core.rs - core::merge_and_cleanup_chunks (line 721) ... ignored
[INFO] [stdout] test src/core.rs - core::orient_extracted_feature (line 1297) ... ignored
[INFO] [stdout] test src/core.rs - core::output_path (line 775) ... ignored
[INFO] [stdout] test src/core.rs - core::parse_fasta_reader (line 2004) ... ignored
[INFO] [stdout] test src/core.rs - core::process_reader (line 563) ... ignored
[INFO] [stdout] test src/core.rs - core::read_regions (line 676) ... ignored
[INFO] [stdout] test src/core.rs - core::reverse_complement (line 1332) ... ignored
[INFO] [stdout] test src/core.rs - core::reverse_complement_in_place (line 1350) ... ignored
[INFO] [stdout] test src/core.rs - core::split_identifier (line 1404) ... ignored
[INFO] [stdout] test src/core.rs - core::strand_label (line 1431) ... ignored
[INFO] [stdout] test src/core.rs - core::translate (line 2063) ... ignored
[INFO] [stdout] test src/core.rs - core::translate_codon (line 2122) ... ignored
[INFO] [stdout] test src/core.rs - core::validate_args (line 516) ... ignored
[INFO] [stdout] test src/core.rs - core::with_gzip_extension (line 749) ... ignored
[INFO] [stdout] test src/core.rs - core::write_chunk (line 812) ... ignored
[INFO] [stdout] test src/core.rs - core::write_fasta_record (line 1491) ... ignored
[INFO] [stdout] test src/core.rs - core::write_joined_output (line 1543) ... ignored
[INFO] [stdout] test src/core.rs - core::write_record_output (line 1710) ... ignored
[INFO] [stdout] test src/core.rs - core::write_split_output (line 1616) ... ignored
[INFO] [stdout] test src/core.rs - core::write_tsv_record (line 1516) ... ignored
[INFO] [stdout] test src/core.rs - core::xloci (line 407) ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 54 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] all doctests ran in 0.37s; merged doctests compilation took 0.17s
[INFO] running `Command { std: "docker" "inspect" "715ddda663d49b28f947113f1cb3d0f3ffce556eaf9e790fde58388e9e54bf5f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "715ddda663d49b28f947113f1cb3d0f3ffce556eaf9e790fde58388e9e54bf5f", kill_on_drop: false }`
[INFO] [stdout] 715ddda663d49b28f947113f1cb3d0f3ffce556eaf9e790fde58388e9e54bf5f