[INFO] fetching crate tinyhgvs 0.6.1... [INFO] testing tinyhgvs-0.6.1 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-2 [INFO] extracting crate tinyhgvs 0.6.1 into /workspace/builds/worker-1-tc2/source [INFO] started tweaking crates.io crate tinyhgvs 0.6.1 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate tinyhgvs 0.6.1 [INFO] tweaked toml for crates.io crate tinyhgvs 0.6.1 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate tinyhgvs 0.6.1 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate tinyhgvs 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] dce5e992e2507ce5976bf153f80df1e810848560a912f08dc327d94007042abb [INFO] running `Command { std: "docker" "start" "-a" "dce5e992e2507ce5976bf153f80df1e810848560a912f08dc327d94007042abb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "dce5e992e2507ce5976bf153f80df1e810848560a912f08dc327d94007042abb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dce5e992e2507ce5976bf153f80df1e810848560a912f08dc327d94007042abb", kill_on_drop: false }` [INFO] [stdout] dce5e992e2507ce5976bf153f80df1e810848560a912f08dc327d94007042abb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 076254370bc568f83c7df8eaa6a0df7745aea20687516996322bdf1625cafca7 [INFO] running `Command { std: "docker" "start" "-a" "076254370bc568f83c7df8eaa6a0df7745aea20687516996322bdf1625cafca7", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling nom v8.0.0 [INFO] [stderr] Compiling tinyhgvs v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 5.87s [INFO] running `Command { std: "docker" "inspect" "076254370bc568f83c7df8eaa6a0df7745aea20687516996322bdf1625cafca7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "076254370bc568f83c7df8eaa6a0df7745aea20687516996322bdf1625cafca7", kill_on_drop: false }` [INFO] [stdout] 076254370bc568f83c7df8eaa6a0df7745aea20687516996322bdf1625cafca7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 55173809eaa0d29df661cc9420e09d2428a30008665b150fc8fe55184cf3d6cc [INFO] running `Command { std: "docker" "start" "-a" "55173809eaa0d29df661cc9420e09d2428a30008665b150fc8fe55184cf3d6cc", kill_on_drop: false }` [INFO] [stderr] Compiling tinyhgvs v0.6.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.11s [INFO] running `Command { std: "docker" "inspect" "55173809eaa0d29df661cc9420e09d2428a30008665b150fc8fe55184cf3d6cc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "55173809eaa0d29df661cc9420e09d2428a30008665b150fc8fe55184cf3d6cc", kill_on_drop: false }` [INFO] [stdout] 55173809eaa0d29df661cc9420e09d2428a30008665b150fc8fe55184cf3d6cc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e6b2af19bc110eb0d3e642b5e9f51dca3326d1d5b6c564dad0f22c12118eb011 [INFO] running `Command { std: "docker" "start" "-a" "e6b2af19bc110eb0d3e642b5e9f51dca3326d1d5b6c564dad0f22c12118eb011", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/tinyhgvs-63ac9aa65a5aeb4e) [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test parser::tests::parses_nucleotide_position_branches ... ok [INFO] [stdout] test parser::tests::parses_nucleotide_edit_branches ... ok [INFO] [stdout] test parser::tests::parses_nucleotide_sequence_items ... ok [INFO] [stdout] test parser::tests::parses_protein_extension_branches ... ok [INFO] [stdout] test parser::tests::parses_protein_frameshift_branches ... ok [INFO] [stdout] test parser::tests::parses_protein_effect_branches ... ok [INFO] [stderr] Running tests/test_diagnostics.rs (/opt/rustwide/target/debug/deps/test_diagnostics-600dcaed178646de) [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test prioritizes_specific_rna_codes_before_generic_ones ... ok [INFO] [stdout] test classifies_supported_diagnostic_codes ... ok [INFO] [stdout] test displays_machine_code_message_and_version ... ok [INFO] [stdout] test falls_back_to_invalid_syntax_for_unclassified_failures ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running tests/test_parser.rs (/opt/rustwide/target/debug/deps/test_parser-0b2ed4d0bc9d11cf) [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test parses_cdna_offset_anchor_variants ... ok [INFO] [stdout] test parses_nucleotide_allele_variants ... ok [INFO] [stdout] test parses_nucleotide_insertion_sequence_items ... ok [INFO] [stdout] test parses_nucleotide_delins_sequence_forms ... ok [INFO] [stdout] test parses_nucleotide_repeat_variants ... ok [INFO] [stdout] test parses_nucleotide_no_change_and_deletion_variants ... ok [INFO] [stdout] test parses_protein_extension_variants ... ok [INFO] [stdout] test parses_protein_allele_variants ... ok [INFO] [stdout] test parses_protein_deletion_duplication_insertion_and_delins_variants ... ok [INFO] [stdout] test parses_nucleotide_duplication_and_inversion_variants ... ok [INFO] [stdout] test parses_protein_frameshift_variants ... ok [INFO] [stdout] test parses_nucleotide_substitution_variants ... ok [INFO] [stdout] test parses_protein_unknown_and_predicted_effects ... ok [INFO] [stdout] test parses_protein_substitution_and_no_change_variants ... ok [INFO] [stdout] test rejects_examples_deferred_to_future_work ... ok [INFO] [stdout] test rejects_malformed_nucleotide_allele_syntax ... ok [INFO] [stdout] test reports_nucleotide_allele_helper_views ... ok [INFO] [stdout] test trims_input_before_parsing ... ok [INFO] [stdout] test reports_intronic_and_utr_coordinate_properties_from_parsed_variants ... ok [INFO] [stdout] test rejects_malformed_cdna_offset_anchor_variants ... ok [INFO] [stdout] test rejects_malformed_protein_allele_syntax ... ok [INFO] [stdout] test rejects_malformed_protein_extension_variants ... ok [INFO] [stdout] test rejects_malformed_protein_frameshift_variants ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests tinyhgvs [INFO] [stdout] [INFO] [stdout] running 33 tests [INFO] [stdout] test src/lib.rs - (line 58) ... ok [INFO] [stdout] test src/lib.rs - (line 34) ... ok [INFO] [stdout] test src/error.rs - error::ParseHgvsError (line 47) ... ok [INFO] [stdout] test src/model.rs - model::Accession (line 59) ... ok [INFO] [stdout] test src/error.rs - error::ParseHgvsErrorKind (line 69) ... ok [INFO] [stdout] test src/model.rs - model::Allele (line 159) ... ok [INFO] [stdout] test src/error.rs - error::ParseHgvsError (line 37) ... ok [INFO] [stdout] test src/lib.rs - (line 92) ... ok [INFO] [stdout] test src/lib.rs - (line 75) ... ok [INFO] [stdout] test src/model.rs - model::HgvsVariant (line 10) ... ok [INFO] [stdout] test src/model.rs - model::Interval (line 449) ... ok [INFO] [stdout] test src/model.rs - model::AllelePhase (line 135) ... ok [INFO] [stdout] test src/model.rs - model::AlleleVariant (line 202) ... ok [INFO] [stdout] test src/model.rs - model::NucleotideCoordinate (line 493) ... ok [INFO] [stdout] test src/model.rs - model::NucleotideRepeatBlock (line 648) ... ok [INFO] [stdout] test src/model.rs - model::ProteinExtensionTerminal (line 350) ... ok [INFO] [stdout] test src/model.rs - model::NucleotideVariant (line 266) ... ok [INFO] [stdout] test src/model.rs - model::ProteinExtensionEdit (line 379) ... ok [INFO] [stdout] test src/model.rs - model::ProteinCoordinate (line 571) ... ok [INFO] [stdout] test src/model.rs - model::ProteinSequence (line 753) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 167) ... ok [INFO] [stdout] test src/model.rs - model::CopiedSequenceItem (line 678) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 115) ... ok [INFO] [stdout] test src/model.rs - model::ReferenceSpec (line 38) ... ok [INFO] [stdout] test src/model.rs - model::ProteinFrameshiftStop (line 412) ... ok [INFO] [stdout] test src/model.rs - model::ProteinVariant (line 294) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 49) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 131) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 187) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 150) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 206) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 71) ... ok [INFO] [stdout] test src/parser.rs - parser::parse_hgvs (line 88) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 3.38s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "e6b2af19bc110eb0d3e642b5e9f51dca3326d1d5b6c564dad0f22c12118eb011", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e6b2af19bc110eb0d3e642b5e9f51dca3326d1d5b6c564dad0f22c12118eb011", kill_on_drop: false }` [INFO] [stdout] e6b2af19bc110eb0d3e642b5e9f51dca3326d1d5b6c564dad0f22c12118eb011