[INFO] fetching crate ref-solver 0.3.0... [INFO] testing ref-solver-0.3.0 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-2 [INFO] extracting crate ref-solver 0.3.0 into /workspace/builds/worker-1-tc2/source [INFO] removed /workspace/builds/worker-1-tc2/source/.cargo/config.toml [INFO] started tweaking crates.io crate ref-solver 0.3.0 [INFO] removed 0 missing tests [INFO] finished tweaking crates.io crate ref-solver 0.3.0 [INFO] tweaked toml for crates.io crate ref-solver 0.3.0 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate ref-solver 0.3.0 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ref-solver 0.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f444f01160eaf88e278815766126e3cf084178d5c3fcc0396c5ed112997cebfd [INFO] running `Command { std: "docker" "start" "-a" "f444f01160eaf88e278815766126e3cf084178d5c3fcc0396c5ed112997cebfd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f444f01160eaf88e278815766126e3cf084178d5c3fcc0396c5ed112997cebfd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f444f01160eaf88e278815766126e3cf084178d5c3fcc0396c5ed112997cebfd", kill_on_drop: false }` [INFO] [stdout] f444f01160eaf88e278815766126e3cf084178d5c3fcc0396c5ed112997cebfd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e51589d11da75a6750e9d231260c3db9bf524f59e98322a26630652552468dd1 [INFO] running `Command { std: "docker" "start" "-a" "e51589d11da75a6750e9d231260c3db9bf524f59e98322a26630652552468dd1", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.105 [INFO] [stderr] Compiling quote v1.0.43 [INFO] [stderr] Compiling libc v0.2.180 [INFO] [stderr] Compiling bytes v1.11.0 [INFO] [stderr] Compiling find-msvc-tools v0.1.7 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling futures-core v0.3.31 [INFO] [stderr] Compiling parking_lot_core v0.9.12 [INFO] [stderr] Compiling lock_api v0.4.14 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling typenum v1.19.0 [INFO] [stderr] Compiling cc v1.2.52 [INFO] [stderr] Compiling bitflags v2.10.0 [INFO] [stderr] Compiling http v1.4.0 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Compiling tracing-core v0.1.36 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling futures-sink v0.3.31 [INFO] [stderr] Compiling log v0.4.29 [INFO] [stderr] Compiling zmij v1.0.13 [INFO] [stderr] Compiling syn v2.0.114 [INFO] [stderr] Compiling slab v0.4.11 [INFO] [stderr] Compiling futures-task v0.3.31 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling simd-adler32 v0.3.8 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling errno v0.3.14 [INFO] [stderr] Compiling parking_lot v0.12.5 [INFO] [stderr] Compiling signal-hook-registry v1.4.8 [INFO] [stderr] Compiling mio v1.1.1 [INFO] [stderr] Compiling socket2 v0.6.1 [INFO] [stderr] Compiling http-body v1.0.1 [INFO] [stderr] Compiling flate2 v1.1.8 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling lexical-util v1.0.7 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling crypto-common v0.1.7 [INFO] [stderr] Compiling block-buffer v0.10.4 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling httpdate v1.0.3 [INFO] [stderr] Compiling noodles-bgzf v0.34.0 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Compiling futures-channel v0.3.31 [INFO] [stderr] Compiling sync_wrapper v1.0.2 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling zerocopy v0.8.33 [INFO] [stderr] Compiling lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling lexical-write-integer v1.0.6 [INFO] [stderr] Compiling noodles-csi v0.41.0 [INFO] [stderr] Compiling http-body-util v0.1.3 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling rustls v0.23.37 [INFO] [stderr] Compiling unicase v2.9.0 [INFO] [stderr] Compiling lexical-parse-float v1.0.6 [INFO] [stderr] Compiling mime_guess v2.0.5 [INFO] [stderr] Compiling lexical-write-float v1.0.6 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling ryu v1.0.22 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Compiling lexical-core v1.0.6 [INFO] [stderr] Compiling rand_core v0.9.5 [INFO] [stderr] Compiling multer v3.1.0 [INFO] [stderr] Compiling portable-atomic v1.13.0 [INFO] [stderr] Compiling sha2 v0.10.9 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling noodles-sam v0.67.0 [INFO] [stderr] Compiling webpki-roots v1.0.6 [INFO] [stderr] Compiling raw-cpuid v11.6.0 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling rustix v1.1.3 [INFO] [stderr] Compiling spin v0.9.8 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling http-range-header v0.4.2 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling anstyle v1.0.13 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling anstream v0.6.21 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.1 [INFO] [stderr] Compiling zerovec-derive v0.11.2 [INFO] [stderr] Compiling tokio-macros v2.6.0 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling tracing-attributes v0.1.31 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.1 [INFO] [stderr] Compiling tokio v1.49.0 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling rustls-webpki v0.103.9 [INFO] [stderr] Compiling zerotrie v0.2.3 [INFO] [stderr] Compiling zerovec v0.11.5 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling tinystr v0.8.2 [INFO] [stderr] Compiling tracing v0.1.44 [INFO] [stderr] Compiling icu_locale_core v2.1.1 [INFO] [stderr] Compiling potential_utf v0.1.4 [INFO] [stderr] Compiling icu_collections v2.1.1 [INFO] [stderr] Compiling axum-core v0.5.6 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling icu_provider v2.1.1 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling icu_properties v2.1.2 [INFO] [stderr] Compiling icu_normalizer v2.1.1 [INFO] [stderr] Compiling quanta v0.12.6 [INFO] [stderr] Compiling noodles-bam v0.71.0 [INFO] [stderr] Compiling pin-project-internal v1.1.10 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling serde_urlencoded v0.7.1 [INFO] [stderr] Compiling dashmap v6.1.0 [INFO] [stderr] Compiling url v2.5.8 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling refget-digest v0.1.0 [INFO] [stderr] Compiling noodles-tabix v0.47.0 [INFO] [stderr] Compiling noodles-fasta v0.46.0 [INFO] [stderr] Compiling tokio-util v0.7.18 [INFO] [stderr] Compiling hyper v1.8.1 [INFO] [stderr] Compiling md-5 v0.10.6 [INFO] [stderr] Compiling serde_path_to_error v0.1.20 [INFO] [stderr] Compiling spinning_top v0.3.0 [INFO] [stderr] Compiling tokio-rustls v0.26.4 [INFO] [stderr] Compiling tower v0.5.3 [INFO] [stderr] Compiling is-docker v0.2.0 [INFO] [stderr] Compiling web-time v1.1.0 [INFO] [stderr] Compiling clap_lex v0.7.6 [INFO] [stderr] Compiling linux-raw-sys v0.11.0 [INFO] [stderr] Compiling nonempty v0.7.0 [INFO] [stderr] Compiling no-std-compat v0.4.1 [INFO] [stderr] Compiling futures-timer v3.0.3 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling nonzero_ext v0.3.0 [INFO] [stderr] Compiling matchit v0.8.4 [INFO] [stderr] Compiling tower-http v0.6.8 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling hyper-util v0.1.19 [INFO] [stderr] Compiling governor v0.8.1 [INFO] [stderr] Compiling clap_builder v4.5.54 [INFO] [stderr] Compiling sharded-slab v0.1.7 [INFO] [stderr] Compiling forwarded-header-value v0.1.1 [INFO] [stderr] Compiling is-wsl v0.4.0 [INFO] [stderr] Compiling noodles-cram v0.72.0 [INFO] [stderr] Compiling noodles-vcf v0.69.0 [INFO] [stderr] Compiling refget-model v0.1.0 [INFO] [stderr] Compiling hyper-rustls v0.27.7 [INFO] [stderr] Compiling axum v0.8.8 [INFO] [stderr] Compiling matchers v0.2.0 [INFO] [stderr] Compiling reqwest v0.12.28 [INFO] [stderr] Compiling pin-project v1.1.10 [INFO] [stderr] Compiling ref-solver v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling tracing-log v0.2.0 [INFO] [stderr] Compiling thread_local v1.1.9 [INFO] [stderr] Compiling pathdiff v0.2.3 [INFO] [stderr] Compiling nu-ansi-term v0.50.3 [INFO] [stderr] Compiling chrono v0.4.42 [INFO] [stderr] Compiling tracing-subscriber v0.3.22 [INFO] [stderr] Compiling open v5.3.3 [INFO] [stderr] Compiling tempfile v3.24.0 [INFO] [stderr] warning: ref-solver@0.3.0: Validated catalog: 14 references, 24029 total contigs [INFO] [stderr] Compiling noodles v0.86.0 [INFO] [stderr] Compiling refget-client v0.1.0 [INFO] [stderr] Compiling clap v4.5.54 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling md5 v0.7.0 [INFO] [stderr] Compiling tower_governor v0.6.0 [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 03s [INFO] running `Command { std: "docker" "inspect" "e51589d11da75a6750e9d231260c3db9bf524f59e98322a26630652552468dd1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e51589d11da75a6750e9d231260c3db9bf524f59e98322a26630652552468dd1", kill_on_drop: false }` [INFO] [stdout] e51589d11da75a6750e9d231260c3db9bf524f59e98322a26630652552468dd1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] af8dc4f2324695452b415a5d0164a91fa5d51803a2b2b736621492aed44e2272 [INFO] running `Command { std: "docker" "start" "-a" "af8dc4f2324695452b415a5d0164a91fa5d51803a2b2b736621492aed44e2272", kill_on_drop: false }` [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling predicates-core v1.0.9 [INFO] [stderr] warning: ref-solver@0.3.0: Validated catalog: 14 references, 24029 total contigs [INFO] [stderr] Compiling float-cmp v0.10.0 [INFO] [stderr] Compiling termtree v0.5.1 [INFO] [stderr] Compiling normalize-line-endings v0.3.0 [INFO] [stderr] Compiling assert_cmd v2.1.2 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling predicates-tree v1.0.12 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling bstr v1.12.1 [INFO] [stderr] Compiling matchers v0.2.0 [INFO] [stderr] Compiling regex v1.12.2 [INFO] [stderr] Compiling tracing-subscriber v0.3.22 [INFO] [stderr] Compiling predicates v3.1.3 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling noodles-csi v0.41.0 [INFO] [stderr] Compiling noodles-fasta v0.46.0 [INFO] [stderr] Compiling noodles-sam v0.67.0 [INFO] [stderr] Compiling noodles-tabix v0.47.0 [INFO] [stderr] Compiling noodles-vcf v0.69.0 [INFO] [stderr] Compiling noodles-bam v0.71.0 [INFO] [stderr] Compiling noodles-cram v0.72.0 [INFO] [stderr] Compiling noodles v0.86.0 [INFO] [stderr] Compiling ref-solver v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 19s [INFO] running `Command { std: "docker" "inspect" "af8dc4f2324695452b415a5d0164a91fa5d51803a2b2b736621492aed44e2272", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "af8dc4f2324695452b415a5d0164a91fa5d51803a2b2b736621492aed44e2272", kill_on_drop: false }` [INFO] [stdout] af8dc4f2324695452b415a5d0164a91fa5d51803a2b2b736621492aed44e2272 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] d42fa78d5f18baf57e2e650932209160d1794d04df46a4403062600fa6a872ae [INFO] running `Command { std: "docker" "start" "-a" "d42fa78d5f18baf57e2e650932209160d1794d04df46a4403062600fa6a872ae", kill_on_drop: false }` [INFO] [stderr] warning: ref-solver@0.3.0: Validated catalog: 14 references, 24029 total contigs [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.49s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/ref_solver-e8e4cc29a8e580b7) [INFO] [stdout] [INFO] [stdout] running 189 tests [INFO] [stdout] test catalog::builder::tests::test_builder_conflict_detection ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_assembly_overrides_contig_assembly ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_chm13_assembly_display ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_download_url_overrides_contig_uri ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_species_overrides_contig_species ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_no_assembly_preserves_contig_assembly ... ok [INFO] [stdout] test catalog::builder::tests::test_detect_assembly ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_no_download_url_preserves_contig_uri ... ok [INFO] [stdout] test catalog::builder::tests::test_distribution_builder_preserves_order ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_download_url_overrides_dict_file_uri ... ok [INFO] [stdout] test catalog::builder::tests::test_distribution_builder_merges_inputs ... ok [INFO] [stdout] test catalog::builder::tests::test_distribution_builder_md5_conflict ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_assembly_overrides_dict_file_as_tag ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_get_distribution ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_index_by_name_length ... ok [INFO] [stdout] test catalog::builder::tests::test_distribution_builder_single_dict ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_index_by_md5 ... ok [INFO] [stdout] test catalog::builder::tests::test_input_format_detection ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_single_input ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_exact_match ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_default_threshold ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_distinguishes_versions ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_merge_with_aliases ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_empty_input ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_no_match ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_standalone_distribution ... ok [INFO] [stdout] test catalog::store::tests::test_add_reference ... ok [INFO] [stdout] test catalog::store::tests::test_alias_indexing ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_no_species_preserves_contig_species ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_partial_match ... ok [INFO] [stdout] test catalog::index::tests::test_find_candidates_via_alias ... ok [INFO] [stdout] test cli::score::tests::test_compute_score_asymmetric ... ok [INFO] [stdout] test cli::score::tests::test_compute_score_partial_match ... ok [INFO] [stdout] test cli::score::tests::test_compute_score_perfect_match ... ok [INFO] [stdout] test cli::score::tests::test_custom_weights ... ok [INFO] [stdout] test cli::score::tests::test_parse_dict_input ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_save_and_load_roundtrip ... ok [INFO] [stdout] test cli::score::tests::test_score_with_md5_match ... ok [INFO] [stdout] test core::assembly::tests::test_merge_adds_md5_when_missing ... ok [INFO] [stdout] test core::assembly::tests::test_merge_excludes_name_from_aliases ... ok [INFO] [stdout] test core::assembly::tests::test_merge_fills_missing_report_contig_id ... ok [INFO] [stdout] test core::assembly::tests::test_merge_keeps_existing_md5 ... ok [INFO] [stdout] test cli::score::tests::test_score_with_md5_conflict ... ok [INFO] [stdout] test core::assembly::tests::test_merge_length_mismatch_errors ... ok [INFO] [stdout] test core::assembly::tests::test_merge_md5_same_value_ok ... ok [INFO] [stdout] test core::assembly::tests::test_merge_name_mismatch_errors ... ok [INFO] [stdout] test core::assembly::tests::test_merge_takes_first_report_contig_id ... ok [INFO] [stdout] test core::assembly::tests::test_merge_unions_aliases ... ok [INFO] [stdout] test core::contig::tests::test_is_mitochondrial ... ok [INFO] [stdout] test core::contig::tests::test_is_primary_chromosome ... ok [INFO] [stdout] test core::assembly::tests::test_merge_md5_conflict_errors ... ok [INFO] [stdout] test core::header::tests::test_detect_ncbi_naming ... ok [INFO] [stdout] test core::header::tests::test_detect_mixed_naming ... ok [INFO] [stdout] test core::header::tests::test_detect_ucsc_naming ... ok [INFO] [stdout] test core::header::tests::test_md5_coverage ... ok [INFO] [stdout] test core::header::tests::test_md5_coverage_full ... ok [INFO] [stdout] test core::header::tests::test_md5_coverage_empty ... ok [INFO] [stdout] test core::header::tests::test_name_length_set ... ok [INFO] [stdout] test core::header::tests::test_primary_contigs ... ok [INFO] [stdout] test core::header::tests::test_query_header_new ... ok [INFO] [stdout] test core::header::tests::test_query_header_no_md5 ... ok [INFO] [stdout] test core::header::tests::test_signature_computed ... ok [INFO] [stdout] test core::header::tests::test_signature_deterministic ... ok [INFO] [stdout] test core::header::tests::test_with_source ... ok [INFO] [stdout] test core::header::tests::test_query_header_md5_set ... ok [INFO] [stdout] test catalog::store::tests::test_load_embedded_catalog ... ok [INFO] [stdout] test catalog::store::tests::test_name_length_set_contains_aliases ... ok [INFO] [stdout] test catalog::store::tests::test_catalog_get_nonexistent ... ok [INFO] [stdout] test matching::engine::tests::test_find_best_match ... ok [INFO] [stdout] test catalog::store::tests::test_catalog_get_by_id ... ok [INFO] [stdout] test catalog::index::tests::test_find_candidates_real_catalog ... ok [INFO] [stdout] test matching::engine::tests::test_catalog_contains_ucsc_patch_aliases ... ok [INFO] [stdout] test matching::engine::tests::test_find_matches_grch37 ... ok [INFO] [stdout] test matching::engine::tests::test_no_matches_for_invalid_contigs ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_assembly_info_populated ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_exact_match ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_name_length_fallback ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_subset_match ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_superset_match ... ok [INFO] [stdout] test matching::scoring::tests::test_alias_match_query_alias_to_ref_alias ... ok [INFO] [stdout] test matching::scoring::tests::test_alias_match_query_alias_to_ref_name ... ok [INFO] [stdout] test matching::scoring::tests::test_alias_match_query_name_to_ref_alias ... ok [INFO] [stdout] test matching::scoring::tests::test_alias_match_query_name_to_ref_name ... ok [INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_exact ... ok [INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_md5_conflict ... ok [INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_no_md5 ... ok [INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_unmatched ... ok [INFO] [stdout] test matching::scoring::tests::test_composite_score_never_exceeds_one ... ok [INFO] [stdout] test matching::scoring::tests::test_composite_score_with_custom_weights_never_exceeds_one ... ok [INFO] [stdout] test matching::scoring::tests::test_jaccard_similarity ... ok [INFO] [stdout] test matching::scoring::tests::test_longest_increasing_subsequence ... ok [INFO] [stdout] test matching::scoring::tests::test_md5_conflict_gets_heavy_penalty ... ok [INFO] [stdout] test matching::scoring::tests::test_mixed_match_types_weighted_correctly ... ok [INFO] [stdout] test matching::scoring::tests::test_perfect_name_length_match_no_md5_gets_high_score ... ok [INFO] [stdout] test parsing::dict::tests::test_parse_dict_text ... ok [INFO] [stdout] test parsing::fai::tests::test_parse_fai_empty ... ok [INFO] [stdout] test parsing::fai::tests::test_parse_fai_entries ... ok [INFO] [stdout] test parsing::fai::tests::test_parse_fai_text ... ok [INFO] [stdout] test parsing::fasta::tests::test_is_fasta_file ... ok [INFO] [stdout] test parsing::fasta::tests::test_parse_empty_fasta ... ok [INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_file ... ok [INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_with_md5 ... ok [INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_with_md5_lowercase ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_existing_ucsc_name ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_ucsc_generation_disabled ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_ucsc_generation_enabled ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_fix ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_invalid_format ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_novel ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_version_2 ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_ncbi_entry_to_contig ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_novel_patch_ucsc_generation ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report_no_header ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report_with_patches ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_to_contig_with_ucsc_generation ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_ucsc_generation_for_different_chromosomes ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_basic ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_empty ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_truncated_after_header ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_basic ... ok [INFO] [stdout] test catalog::store::tests::test_catalog_to_json ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_empty ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_already_tabs ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_mixed_lines ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_truncated_after_header ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_multiple_spaces ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_preserves_non_header_lines ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_skips_comment_lines ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_spaces_to_tabs ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_tabs_and_spaces_mixed ... ok [INFO] [stdout] test parsing::sam::tests::test_parse_header_text ... ok [INFO] [stdout] test parsing::sam::tests::test_parse_header_text_no_sq ... ok [INFO] [stdout] test parsing::sam::tests::test_parse_header_text_with_aliases ... ok [INFO] [stdout] test parsing::sam::tests::test_parse_header_text_with_spaces ... ok [INFO] [stdout] test parsing::tsv::tests::test_parse_csv_text ... ok [INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_comments_before_header ... ok [INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_no_header ... ok [INFO] [stdout] test parsing::vcf::tests::test_parse_contig_line ... ok [INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_header ... ok [INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_text ... ok [INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_quoted_values ... ok [INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields ... ok [INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields_empty ... ok [INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_no_contigs ... ok [INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields_utf8 ... ok [INFO] [stdout] test refget::enrichment::tests::test_contigs_without_md5_are_skipped ... ok [INFO] [stdout] test refget::enrichment::tests::test_invalid_server_produces_errors ... ok [INFO] [stdout] test refget::enrichment::tests::test_mixed_contigs_with_and_without_md5 ... ok [INFO] [stdout] test refget::enrichment::tests::test_concurrency_limit_respected ... ok [INFO] [stdout] test utils::validation::tests::test_check_contig_limit ... ok [INFO] [stdout] test utils::validation::tests::test_compute_sha512t24u ... ok [INFO] [stdout] test utils::validation::tests::test_compute_signature ... ok [INFO] [stdout] test utils::validation::tests::test_has_known_extension ... ok [INFO] [stdout] test utils::validation::tests::test_is_valid_md5 ... ok [INFO] [stdout] test utils::validation::tests::test_is_valid_sha512t24u ... ok [INFO] [stdout] test utils::validation::tests::test_normalize_md5 ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_content_binary ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_content_text ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_format_bam ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_format_cram ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_format_vcf ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_format_sam ... ok [INFO] [stdout] test utils::validation::tests::test_validate_filename_dangerous ... ok [INFO] [stdout] test utils::validation::tests::test_validate_filename_safe ... ok [INFO] [stdout] test utils::validation::tests::test_validate_filename_sanitization ... ok [INFO] [stdout] test utils::validation::tests::test_validate_upload_complete ... ok [INFO] [stdout] test web::format_detection::tests::test_combined_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_dict_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_dict_detection_with_spaces ... ok [INFO] [stdout] test web::format_detection::tests::test_fai_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_fai_validation ... ok [INFO] [stdout] test web::format_detection::tests::test_filename_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_format_validation ... ok [INFO] [stdout] test web::format_detection::tests::test_ncbi_report_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_bam_from_bytes ... ok [INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_bam ... ok [INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_truncated_bam ... ok [INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_unsupported_format ... ok [INFO] [stdout] test web::format_detection::tests::test_sam_header_detection_with_spaces ... ok [INFO] [stdout] test web::format_detection::tests::test_sam_validation_with_spaces ... ok [INFO] [stdout] test web::format_detection::tests::test_vcf_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_sam_header_detection ... ok [INFO] [stdout] test matching::engine::tests::test_find_matches_grch38 ... ok [INFO] [stdout] test matching::engine::tests::test_ucsc_style_novel_patch_matching ... ok [INFO] [stdout] test matching::engine::tests::test_find_matches_ncbi_naming ... ok [INFO] [stdout] test matching::engine::tests::test_ucsc_style_fix_patch_matching ... ok [INFO] [stdout] test matching::engine::tests::test_find_matches_no_md5 ... ok [INFO] [stdout] test matching::engine::tests::test_ucsc_style_y_chromosome_patch_matching ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 189 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 17.63s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/ref_solver-1d84dd8a5231b44f) [INFO] [stdout] [INFO] [stdout] running 189 tests [INFO] [stdout] test catalog::builder::tests::test_builder_chm13_assembly_display ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_conflict_detection ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_no_assembly_preserves_contig_assembly ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_assembly_overrides_dict_file_as_tag ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_merge_with_aliases ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_download_url_overrides_dict_file_uri ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_species_overrides_contig_species ... ok [INFO] [stdout] test catalog::builder::tests::test_detect_assembly ... ok [INFO] [stdout] test catalog::builder::tests::test_distribution_builder_md5_conflict ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_download_url_overrides_contig_uri ... ok [INFO] [stdout] test catalog::builder::tests::test_distribution_builder_merges_inputs ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_get_distribution ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_index_by_md5 ... ok [INFO] [stdout] test catalog::builder::tests::test_distribution_builder_preserves_order ... ok [INFO] [stdout] test catalog::builder::tests::test_input_format_detection ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_distinguishes_versions ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_empty_input ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_exact_match ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_no_match ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_partial_match ... ok [INFO] [stdout] test catalog::builder::tests::test_distribution_builder_single_dict ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_assembly_overrides_contig_assembly ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_index_by_name_length ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_standalone_distribution ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_infer_base_assembly_default_threshold ... ok [INFO] [stdout] test catalog::store::tests::test_alias_indexing ... ok [INFO] [stdout] test catalog::hierarchical::tests::test_save_and_load_roundtrip ... ok [INFO] [stdout] test catalog::store::tests::test_add_reference ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_single_input ... ok [INFO] [stdout] test catalog::index::tests::test_find_candidates_via_alias ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_no_species_preserves_contig_species ... ok [INFO] [stdout] test catalog::builder::tests::test_builder_no_download_url_preserves_contig_uri ... ok [INFO] [stdout] test cli::score::tests::test_compute_score_asymmetric ... ok [INFO] [stdout] test cli::score::tests::test_compute_score_partial_match ... ok [INFO] [stdout] test cli::score::tests::test_custom_weights ... ok [INFO] [stdout] test cli::score::tests::test_parse_dict_input ... ok [INFO] [stdout] test cli::score::tests::test_score_with_md5_conflict ... ok [INFO] [stdout] test cli::score::tests::test_score_with_md5_match ... ok [INFO] [stdout] test core::assembly::tests::test_merge_adds_md5_when_missing ... ok [INFO] [stdout] test cli::score::tests::test_compute_score_perfect_match ... ok [INFO] [stdout] test core::assembly::tests::test_merge_excludes_name_from_aliases ... ok [INFO] [stdout] test core::assembly::tests::test_merge_keeps_existing_md5 ... ok [INFO] [stdout] test core::assembly::tests::test_merge_length_mismatch_errors ... ok [INFO] [stdout] test core::assembly::tests::test_merge_fills_missing_report_contig_id ... ok [INFO] [stdout] test core::assembly::tests::test_merge_md5_conflict_errors ... ok [INFO] [stdout] test core::assembly::tests::test_merge_md5_same_value_ok ... ok [INFO] [stdout] test core::assembly::tests::test_merge_takes_first_report_contig_id ... ok [INFO] [stdout] test core::assembly::tests::test_merge_name_mismatch_errors ... ok [INFO] [stdout] test core::assembly::tests::test_merge_unions_aliases ... ok [INFO] [stdout] test core::contig::tests::test_is_mitochondrial ... ok [INFO] [stdout] test core::header::tests::test_detect_mixed_naming ... ok [INFO] [stdout] test core::header::tests::test_detect_ncbi_naming ... ok [INFO] [stdout] test core::header::tests::test_detect_ucsc_naming ... ok [INFO] [stdout] test core::contig::tests::test_is_primary_chromosome ... ok [INFO] [stdout] test core::header::tests::test_md5_coverage_empty ... ok [INFO] [stdout] test core::header::tests::test_md5_coverage ... ok [INFO] [stdout] test core::header::tests::test_name_length_set ... ok [INFO] [stdout] test core::header::tests::test_md5_coverage_full ... ok [INFO] [stdout] test core::header::tests::test_primary_contigs ... ok [INFO] [stdout] test core::header::tests::test_query_header_new ... ok [INFO] [stdout] test core::header::tests::test_query_header_no_md5 ... ok [INFO] [stdout] test core::header::tests::test_signature_computed ... ok [INFO] [stdout] test core::header::tests::test_signature_deterministic ... ok [INFO] [stdout] test core::header::tests::test_with_source ... ok [INFO] [stdout] test core::header::tests::test_query_header_md5_set ... ok [INFO] [stdout] test matching::engine::tests::test_catalog_contains_ucsc_patch_aliases ... ok [INFO] [stdout] test catalog::index::tests::test_find_candidates_real_catalog ... ok [INFO] [stdout] test catalog::store::tests::test_catalog_get_by_id ... ok [INFO] [stdout] test matching::engine::tests::test_find_best_match ... ok [INFO] [stdout] test catalog::store::tests::test_name_length_set_contains_aliases ... ok [INFO] [stdout] test catalog::store::tests::test_catalog_get_nonexistent ... ok [INFO] [stdout] test catalog::store::tests::test_load_embedded_catalog ... ok [INFO] [stdout] test matching::engine::tests::test_find_matches_grch37 ... ok [INFO] [stdout] test catalog::store::tests::test_catalog_to_json ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_assembly_info_populated ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_exact_match ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_name_length_fallback ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_subset_match ... ok [INFO] [stdout] test matching::hierarchical_engine::tests::test_superset_match ... ok [INFO] [stdout] test matching::scoring::tests::test_alias_match_query_alias_to_ref_alias ... ok [INFO] [stdout] test matching::scoring::tests::test_alias_match_query_alias_to_ref_name ... ok [INFO] [stdout] test matching::scoring::tests::test_alias_match_query_name_to_ref_alias ... ok [INFO] [stdout] test matching::scoring::tests::test_alias_match_query_name_to_ref_name ... ok [INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_exact ... ok [INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_md5_conflict ... ok [INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_no_md5 ... ok [INFO] [stdout] test matching::scoring::tests::test_classify_contig_match_unmatched ... ok [INFO] [stdout] test matching::scoring::tests::test_composite_score_never_exceeds_one ... ok [INFO] [stdout] test matching::scoring::tests::test_composite_score_with_custom_weights_never_exceeds_one ... ok [INFO] [stdout] test matching::scoring::tests::test_jaccard_similarity ... ok [INFO] [stdout] test matching::scoring::tests::test_longest_increasing_subsequence ... ok [INFO] [stdout] test matching::scoring::tests::test_md5_conflict_gets_heavy_penalty ... ok [INFO] [stdout] test matching::scoring::tests::test_mixed_match_types_weighted_correctly ... ok [INFO] [stdout] test matching::scoring::tests::test_perfect_name_length_match_no_md5_gets_high_score ... ok [INFO] [stdout] test parsing::dict::tests::test_parse_dict_text ... ok [INFO] [stdout] test parsing::fai::tests::test_parse_fai_empty ... ok [INFO] [stdout] test parsing::fai::tests::test_parse_fai_entries ... ok [INFO] [stdout] test parsing::fai::tests::test_parse_fai_text ... ok [INFO] [stdout] test parsing::fasta::tests::test_is_fasta_file ... ok [INFO] [stdout] test parsing::fasta::tests::test_parse_empty_fasta ... ok [INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_file ... ok [INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_with_md5 ... ok [INFO] [stdout] test parsing::fasta::tests::test_parse_fasta_with_md5_lowercase ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_existing_ucsc_name ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_ucsc_generation_disabled ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_all_names_with_ucsc_generation_enabled ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_fix ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_invalid_format ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_novel ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_generate_ucsc_patch_name_version_2 ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_ncbi_entry_to_contig ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_novel_patch_ucsc_generation ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report_no_header ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_parse_ncbi_report_with_patches ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_to_contig_with_ucsc_generation ... ok [INFO] [stdout] test parsing::ncbi_report::tests::test_ucsc_generation_for_different_chromosomes ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_basic ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_empty ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_bam_from_reader_truncated_after_header ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_basic ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_empty ... ok [INFO] [stdout] test parsing::sam::reader_tests::test_parse_cram_from_reader_truncated_after_header ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_already_tabs ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_mixed_lines ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_multiple_spaces ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_preserves_non_header_lines ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_skips_comment_lines ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_spaces_to_tabs ... ok [INFO] [stdout] test parsing::sam::tests::test_normalize_sam_whitespace_tabs_and_spaces_mixed ... ok [INFO] [stdout] test parsing::sam::tests::test_parse_header_text ... ok [INFO] [stdout] test parsing::sam::tests::test_parse_header_text_no_sq ... ok [INFO] [stdout] test parsing::sam::tests::test_parse_header_text_with_aliases ... ok [INFO] [stdout] test parsing::sam::tests::test_parse_header_text_with_spaces ... ok [INFO] [stdout] test parsing::tsv::tests::test_parse_csv_text ... ok [INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_comments_before_header ... ok [INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_no_header ... ok [INFO] [stdout] test parsing::tsv::tests::test_parse_tsv_text ... ok [INFO] [stdout] test parsing::vcf::tests::test_parse_contig_line ... ok [INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_header ... ok [INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_no_contigs ... ok [INFO] [stdout] test parsing::vcf::tests::test_parse_vcf_quoted_values ... ok [INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields ... ok [INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields_empty ... ok [INFO] [stdout] test parsing::vcf::tests::test_split_contig_fields_utf8 ... ok [INFO] [stdout] test refget::enrichment::tests::test_concurrency_limit_respected ... ok [INFO] [stdout] test refget::enrichment::tests::test_contigs_without_md5_are_skipped ... ok [INFO] [stdout] test refget::enrichment::tests::test_invalid_server_produces_errors ... ok [INFO] [stdout] test refget::enrichment::tests::test_mixed_contigs_with_and_without_md5 ... ok [INFO] [stdout] test utils::validation::tests::test_check_contig_limit ... ok [INFO] [stdout] test utils::validation::tests::test_compute_sha512t24u ... ok [INFO] [stdout] test utils::validation::tests::test_compute_signature ... ok [INFO] [stdout] test utils::validation::tests::test_has_known_extension ... ok [INFO] [stdout] test utils::validation::tests::test_is_valid_md5 ... ok [INFO] [stdout] test utils::validation::tests::test_is_valid_sha512t24u ... ok [INFO] [stdout] test utils::validation::tests::test_normalize_md5 ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_content_binary ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_content_text ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_format_bam ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_format_cram ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_format_sam ... ok [INFO] [stdout] test utils::validation::tests::test_validate_file_format_vcf ... ok [INFO] [stdout] test utils::validation::tests::test_validate_filename_dangerous ... ok [INFO] [stdout] test utils::validation::tests::test_validate_filename_safe ... ok [INFO] [stdout] test utils::validation::tests::test_validate_filename_sanitization ... ok [INFO] [stdout] test utils::validation::tests::test_validate_upload_complete ... ok [INFO] [stdout] test web::format_detection::tests::test_combined_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_dict_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_dict_detection_with_spaces ... ok [INFO] [stdout] test web::format_detection::tests::test_fai_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_fai_validation ... ok [INFO] [stdout] test web::format_detection::tests::test_filename_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_format_validation ... ok [INFO] [stdout] test web::format_detection::tests::test_ncbi_report_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_bam_from_bytes ... ok [INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_bam ... ok [INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_truncated_bam ... ok [INFO] [stdout] test web::format_detection::tests::test_parse_binary_file_from_path_unsupported_format ... ok [INFO] [stdout] test web::format_detection::tests::test_sam_header_detection ... ok [INFO] [stdout] test web::format_detection::tests::test_sam_header_detection_with_spaces ... ok [INFO] [stdout] test web::format_detection::tests::test_sam_validation_with_spaces ... ok [INFO] [stdout] test web::format_detection::tests::test_vcf_detection ... ok [INFO] [stdout] test matching::engine::tests::test_find_matches_grch38 ... ok [INFO] [stdout] test matching::engine::tests::test_no_matches_for_invalid_contigs ... ok [INFO] [stdout] test matching::engine::tests::test_find_matches_no_md5 ... ok [INFO] [stdout] test matching::engine::tests::test_ucsc_style_fix_patch_matching ... ok [INFO] [stdout] test matching::engine::tests::test_ucsc_style_novel_patch_matching ... ok [INFO] [stdout] test matching::engine::tests::test_find_matches_ncbi_naming ... ok [INFO] [stdout] test matching::engine::tests::test_ucsc_style_y_chromosome_patch_matching ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 189 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 17.28s [INFO] [stdout] [INFO] [stderr] Running tests/dos_tests.rs (/opt/rustwide/target/debug/deps/dos_tests-3fff8d58c71a8b0b) [INFO] [stdout] [INFO] [stdout] running 14 tests [INFO] [stdout] test test_malformed_multipart_protection ... ok [INFO] [stdout] test test_attack_recovery_resilience ... ok [INFO] [stdout] test test_field_count_limit_prevention ... ok [INFO] [stdout] test test_memory_allocation_protection ... ok [INFO] [stdout] test test_network_resource_protection ... ok [INFO] [stdout] test test_rapid_request_flood_protection ... ok [INFO] [stdout] test test_realistic_attack_simulation ... ok [INFO] [stdout] test test_cpu_intensive_parsing_protection ... ok [INFO] [stdout] test test_file_size_limit_prevention ... ok [INFO] [stdout] test test_string_processing_limits ... ok [INFO] [stdout] test test_concurrency_limit_protection ... ok [INFO] [stdout] test test_error_handling_resource_protection ... ok [INFO] [stdout] test test_binary_processing_resource_limits ... ok [INFO] [stdout] test test_slow_request_timeout_protection ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 30.01s [INFO] [stdout] [INFO] [stderr] Running tests/header_extraction_tests.rs (/opt/rustwide/target/debug/deps/header_extraction_tests-02e601ec77f4f1c3) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_parse_bam_from_reader_with_trailing_garbage ... ok [INFO] [stdout] test test_parse_bam_from_reader_roundtrip ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running tests/security_tests.rs (/opt/rustwide/target/debug/deps/security_tests-86ead734ce8df198) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test test_error_sanitization ... ok [INFO] [stdout] test test_security_headers_concepts ... ok [INFO] [stdout] test test_filename_validation_security ... ok [INFO] [stdout] test test_comprehensive_upload_validation ... ok [INFO] [stdout] test test_format_detection_security ... ok [INFO] [stdout] test test_validation_error_handling ... ok [INFO] [stdout] test test_field_limit_concepts ... ok [INFO] [stdout] test test_temp_file_security ... ok [INFO] [stdout] test test_content_integrity_validation ... ok [INFO] [stdout] test test_file_format_validation ... ok [INFO] [stdout] test test_rate_limiting_configuration ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests ref_solver [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test src/utils/validation.rs - utils::validation::check_contig_limit (line 105) ... ignored [INFO] [stdout] test src/catalog/mod.rs - catalog (line 37) - compile ... ok [INFO] [stdout] test src/lib.rs - (line 24) - compile ... ok [INFO] [stdout] test src/parsing/mod.rs - parsing (line 14) - compile ... ok [INFO] [stdout] test src/catalog/mod.rs - catalog (line 17) - compile ... ok [INFO] [stdout] test src/matching/mod.rs - matching (line 29) - compile ... ok [INFO] [stdout] test src/utils/validation.rs - utils::validation::compute_sha512t24u (line 49) ... ok [INFO] [stdout] test src/catalog/builder.rs - catalog::builder::ReferenceBuilder::generate_ucsc_names (line 264) ... ok [INFO] [stdout] test src/parsing/ncbi_report.rs - parsing::ncbi_report::generate_ucsc_patch_name (line 94) ... ok [INFO] [stdout] test src/utils/validation.rs - utils::validation::is_valid_sha512t24u (line 64) ... ok [INFO] [stdout] test src/utils/validation.rs - utils::validation::is_valid_md5 (line 17) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 5.26s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "d42fa78d5f18baf57e2e650932209160d1794d04df46a4403062600fa6a872ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d42fa78d5f18baf57e2e650932209160d1794d04df46a4403062600fa6a872ae", kill_on_drop: false }` [INFO] [stdout] d42fa78d5f18baf57e2e650932209160d1794d04df46a4403062600fa6a872ae