[INFO] fetching crate mzdeisotope 0.3.5... [INFO] testing mzdeisotope-0.3.5 against try#dec9417b8611e34e787a3e4c37686b5131f9e5c5 for pr-154210-2 [INFO] extracting crate mzdeisotope 0.3.5 into /workspace/builds/worker-2-tc2/source [INFO] started tweaking crates.io crate mzdeisotope 0.3.5 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate mzdeisotope 0.3.5 [INFO] tweaked toml for crates.io crate mzdeisotope 0.3.5 written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate mzdeisotope 0.3.5 on toolchain dec9417b8611e34e787a3e4c37686b5131f9e5c5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate mzdeisotope 0.3.5 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 42a4efa0669b796d374c26b6243ca645c1f01e6bf92cd3e18841c04c6affda2d [INFO] running `Command { std: "docker" "start" "-a" "42a4efa0669b796d374c26b6243ca645c1f01e6bf92cd3e18841c04c6affda2d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "42a4efa0669b796d374c26b6243ca645c1f01e6bf92cd3e18841c04c6affda2d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "42a4efa0669b796d374c26b6243ca645c1f01e6bf92cd3e18841c04c6affda2d", kill_on_drop: false }` [INFO] [stdout] 42a4efa0669b796d374c26b6243ca645c1f01e6bf92cd3e18841c04c6affda2d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4106866190f766ed203d674760accf2977641be33c12e1f0e9885795fc715914 [INFO] running `Command { std: "docker" "start" "-a" "4106866190f766ed203d674760accf2977641be33c12e1f0e9885795fc715914", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling bytemuck v1.23.0 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Compiling adler2 v2.0.0 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling vsimd v0.8.0 [INFO] [stderr] Compiling miniz_oxide v0.8.8 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling outref v0.5.2 [INFO] [stderr] Compiling hashbrown v0.15.3 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling iana-time-zone v0.1.63 [INFO] [stderr] Compiling cpufeatures v0.2.17 [INFO] [stderr] Compiling tracing-core v0.1.33 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling encoding_rs v0.8.35 [INFO] [stderr] Compiling identity-hash v0.1.0 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling base64-simd v0.8.0 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling base16ct v0.2.0 [INFO] [stderr] Compiling flate2 v1.1.1 [INFO] [stderr] Compiling md5 v0.7.0 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling mzpeaks v1.0.9 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling block-buffer v0.10.4 [INFO] [stderr] Compiling crypto-common v0.1.6 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling sha1 v0.10.6 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling tracing-attributes v0.1.28 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling darling_macro v0.20.11 [INFO] [stderr] Compiling darling v0.20.11 [INFO] [stderr] Compiling serde_with_macros v3.12.0 [INFO] [stderr] Compiling quick-xml v0.30.0 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling serde_with v3.12.0 [INFO] [stderr] Compiling chemical_elements v0.7.0 [INFO] [stderr] Compiling mzsignal v1.1.7 [INFO] [stderr] Compiling mzdata v0.63.4 [INFO] [stderr] Compiling mzdeisotope v0.3.5 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 50.47s [INFO] running `Command { std: "docker" "inspect" "4106866190f766ed203d674760accf2977641be33c12e1f0e9885795fc715914", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4106866190f766ed203d674760accf2977641be33c12e1f0e9885795fc715914", kill_on_drop: false }` [INFO] [stdout] 4106866190f766ed203d674760accf2977641be33c12e1f0e9885795fc715914 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 07be1040834070c34feeb1ba52391c140f352a1f22af1e76dd18d4ad2eddad91 [INFO] running `Command { std: "docker" "start" "-a" "07be1040834070c34feeb1ba52391c140f352a1f22af1e76dd18d4ad2eddad91", kill_on_drop: false }` [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling tracing-core v0.1.33 [INFO] [stderr] Compiling regex-syntax v0.6.29 [INFO] [stderr] Compiling anstyle-parse v0.2.6 [INFO] [stderr] Compiling colorchoice v1.0.3 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling overload v0.1.1 [INFO] [stderr] Compiling anstyle-query v1.1.2 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling anstyle v1.0.10 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling thread_local v1.1.8 [INFO] [stderr] Compiling smallvec v1.15.0 [INFO] [stderr] Compiling test-log-macros v0.2.17 [INFO] [stderr] Compiling nu-ansi-term v0.46.0 [INFO] [stderr] Compiling sharded-slab v0.1.7 [INFO] [stderr] Compiling mzsignal v1.1.7 [INFO] [stderr] Compiling env_filter v0.1.3 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling tracing-log v0.2.0 [INFO] [stderr] Compiling env_logger v0.11.8 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling mzdata v0.63.4 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling matchers v0.1.0 [INFO] [stderr] Compiling tracing-subscriber v0.3.19 [INFO] [stderr] Compiling test-log v0.2.17 [INFO] [stderr] Compiling mzdeisotope v0.3.5 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 34.10s [INFO] running `Command { std: "docker" "inspect" "07be1040834070c34feeb1ba52391c140f352a1f22af1e76dd18d4ad2eddad91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "07be1040834070c34feeb1ba52391c140f352a1f22af1e76dd18d4ad2eddad91", kill_on_drop: false }` [INFO] [stdout] 07be1040834070c34feeb1ba52391c140f352a1f22af1e76dd18d4ad2eddad91 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+dec9417b8611e34e787a3e4c37686b5131f9e5c5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] d71d0176378ae24556c3e81947ee101557fc268373973b6b4217f8c747c53670 [INFO] running `Command { std: "docker" "start" "-a" "d71d0176378ae24556c3e81947ee101557fc268373973b6b4217f8c747c53670", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mzdeisotope-e77e16d055c5891d) [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test deconvoluter::test::test_fit_all ... ok [INFO] [stdout] test deconvoluter::test::test_builder ... ok [INFO] [stdout] test deconvoluter::test::test_file_graph_step ... FAILED [INFO] [stdout] test deconvoluter::test::test_full_process_quick_charge ... FAILED [INFO] [stdout] test deconvoluter::test::test_file_step ... FAILED [INFO] [stdout] test deconvoluter::test::test_mut ... ok [INFO] [stdout] test charge::test::test_quick_charge ... FAILED [INFO] [stdout] test deconvoluter::test::test_full_process ... FAILED [INFO] [stdout] test isotopic_model::test::test_cache_key ... ok [INFO] [stdout] test isotopic_model::test::test_conversion_for_frac_composition ... ok [INFO] [stdout] test isotopic_model::test::test_tid ... ok [INFO] [stdout] test isotopic_model::test::test_isotopic_pattern_overflow ... ok [INFO] [stdout] test scorer::test::test_gtest ... ok [INFO] [stdout] test isotopic_model::test::test_mz_truncation ... ok [INFO] [stdout] test isotopic_model::test::test_tid_cached ... ok [INFO] [stdout] test isotopic_model::test::test_scale ... ok [INFO] [stdout] test multi_model_deconvoluters::test::test_file_step ... FAILED [INFO] [stdout] test scorer::test::test_msdeconv ... ok [INFO] [stdout] test scorer::test::test_penalized_msdeconv ... ok [INFO] [stdout] test isotopic_model::test::test_fc ... ok [INFO] [stdout] test scorer::test::test_scaled_gtest ... ok [INFO] [stdout] test isotopic_model::test::test_cache ... ok [INFO] [stdout] test isotopic_model::test::test_mono_to_base ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- deconvoluter::test::test_file_graph_step stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- deconvoluter::test::test_full_process_quick_charge stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- deconvoluter::test::test_file_step stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- charge::test::test_quick_charge stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- deconvoluter::test::test_full_process stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] ---- multi_model_deconvoluters::test::test_file_step stdout ---- [INFO] [stdout] Error: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] charge::test::test_quick_charge [INFO] [stdout] deconvoluter::test::test_file_graph_step [INFO] [stdout] deconvoluter::test::test_file_step [INFO] [stdout] deconvoluter::test::test_full_process [INFO] [stdout] deconvoluter::test::test_full_process_quick_charge [INFO] [stdout] multi_model_deconvoluters::test::test_file_step [INFO] [stdout] [INFO] [stdout] test result: FAILED. 17 passed; 6 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "d71d0176378ae24556c3e81947ee101557fc268373973b6b4217f8c747c53670", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d71d0176378ae24556c3e81947ee101557fc268373973b6b4217f8c747c53670", kill_on_drop: false }` [INFO] [stdout] d71d0176378ae24556c3e81947ee101557fc268373973b6b4217f8c747c53670